FC878382

Overview
NameFC878382
Unique NameFC878382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length864
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5819 contig Ccv1_Contig5819:152..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB1_BRANA (Acetolactate synthase 1, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.829e-19
Identity = 62/209 (29.67%), Postives = 101/209 (48.33%), Query Frame = 2
Query:  149 VRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLP 775
            +R +   +EQ            +GKPGI +  SGPG  + ++GL++ M+++ P+V I+G   ++  G   FQE   VE  +  +K      D+ ++P+ V +    A SGRPG   +D+P D+  Q                 +  + Q   V S + + V L+ E+K+P++  G G+    +  EL + VE TGIP   T MG G  P
Sbjct:  121 IRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADAMLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVDDIPRIVQEAFFLATSGRPGPVLVDVPKDIQQQL--AIPNWDQPMRLPGYMSRLPQPPEV-SQLGQIVRLISESKRPVLYVGGGS--LNSSEELGRFVELTGIPVASTLMGLGSYP 324          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB_ARATH (Acetolactate synthase, chloroplastic OS=Arabidopsis thaliana GN=CSR 1.2 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.075e-19
Identity = 59/209 (28.23%), Postives = 100/209 (47.85%), Query Frame = 2
Query:  149 VRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLP 775
            +R +   +EQ            +GKPGI +  SGPG  + ++GL++ ++++ P+V I+G   ++  G   FQE   VE  +  +K      D+ ++P+ + +    A SGRPG   +D+P D+  Q   +               +       +S +++ V L+ E+KKP++  G G     +  EL + VE TGIP   T MG G  P
Sbjct:  136 IRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDIQQQ---LAIPNWEQAMRLPGYMSRMPKPPEDSHLEQIVRLISESKKPVLYVGGGC--LNSSDELGRFVELTGIPVASTLMGLGSYP 339          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVI_HAEIN (Acetolactate synthase large subunit OS=Haemophilus influenzae GN=ilvI PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.079e-19
Identity = 71/285 (24.91%), Postives = 116/285 (40.70%), Query Frame = 2
Query:   32 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLG-VRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP-------LXXXXXRSLAIGQCDVALVVGARLN 862
            ++ G  +  +SL   G  ++FG  G  V  + +    LG +  I   +EQ            TGK G +L  SGPG  + + G+     ++ P+V+ISG       G   FQE D +   +P  K +   K   ++P  + +    A +GRPG   +D+P D ++                    TV         I KA+  L  AKKP++  G GA  A    +L +  +   +P   + MG G  P T         +      + A+ + D+ L +G R +
Sbjct:    3 KLSGAEMVVQSLRDEGVEYVFGYPGGAVLDIYDAIHTLGGIEHILVRHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGILTAYTDSVPMVIISGQVMSNLIGSDAFQECDMLGISRPVVKHSFIVKKAEDIPSTLKKAFYIASTGRPGPVVVDIPKDTVNPNFKYPYEYPEYVELRSYNPTVNGH---KGQIKKALKALLVAKKPILFVGGGAITAECSEQLIQFAQRLNLPVTSSLMGLGAYPSTDKQFLGMLGMHGTLEANTAMHESDLILGIGVRFD 284          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB_KLEPN (Acetolactate synthase, catabolic OS=Klebsiella pneumoniae GN=budB PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.079e-19
Identity = 58/242 (23.97%), Postives = 101/242 (41.74%), Query Frame = 2
Query:   41 GNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKG 766
            G  L    L   G   +FG+ G  +  + +  +   +R I   +E            +TGK G+ L  SGPGC + + G++       P+V + G+  + D  +   Q +D V    P +K+A++      + + V+     A  GRPG  ++ LP DV+   +S                    G   +  ID+   L+ +AK P+ + G  A+       L++L+E++ IP   T    G
Sbjct:   13 GADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVVDGPVS--------GKVLPASGAPQMGAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAG 246          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB_MYCAV (Acetolactate synthase OS=Mycobacterium avium GN=ilvB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.549e-18
Identity = 67/255 (26.27%), Postives = 110/255 (43.14%), Query Frame = 2
Query:   32 QIDGNTLAAKSLSLFGATHMFGVVGIPVTSLAN-LAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSK---FAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTH 784
            Q+ G     +SL   G   +FG+ G  V  + + L     +R +   +EQ            TGK G+ +  SGPG  + +  L++  +++ P+V ++G   +   G   FQE D      P +K     V+ ++    P  +A+    A SGRP  C +D+P DVL    +                        +  I +   L+  A+KP++  G G     A  +L++L E TGIP + T M +G  PD+H
Sbjct:   41 QVTGAQSVIRSLEELGVEVIFGIPGGAVLPVYDPLFDSKKLRHVLVRHEQGAGHAASGYAHATGKVGVCMATSGPGATNLVTALADAQMDSIPVVAVTGQVGRTLIGTDAFQEADISGITMPITKHNFLVVRQRN----PAVLAEAFHIAASGRPARCSVDIPKDVLQGQCTFSWPPRIHLPGYKPTTKPH-----SRQIRERAKLIAAARKPVLYVGGGVIRGEASEQLRELAELTGIPVVTTLMARGAFPDSH 286          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB_YEAST (Acetolactate synthase catalytic subunit, mitochondrial OS=Saccharomyces cerevisiae GN=ILV2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.023e-18
Identity = 67/246 (27.24%), Postives = 106/246 (43.09%), Query Frame = 2
Query:  155 FIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI--SVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAA-YARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP-------LXXXXXRSLAIGQCDVALVVGARLN 862
            F+   +EQ            +GKPG++L  SGPG  + +  +++   +  P+V+ +G       G   FQE D V   +  +K+ V  K + E+P  + +  E A SGRPG   +DLP DV    +   +             + +  Q   V   I+KA  L+  AKKP++  G G   +A     LK+L +   IP   T  G G      P       +      +LA+   D+ + VGAR +
Sbjct:  133 FVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIAVGARFD 378          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB_ECOLI (Acetolactate synthase isozyme 1 large subunit OS=Escherichia coli (strain K12) GN=ilvB PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.642e-18
Identity = 66/266 (24.81%), Postives = 112/266 (42.11%), Query Frame = 2
Query:   98 VVGIPVTSLAN----LAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL-------XXXXXRSLAIGQCDVALVVGARLN 862
            V GIP  S+      L+    +R I   +EQ             GKP + +  SGPG  + +  +++  +++ P++ I+G       G   FQE+D      P +K     + I E+P+ ++     A SGRPG  ++D+P DV      +              E           I  A +++  AK+P++  G G   A A   +++L E   +P   T M  G+LP  HPL             +  + + D+ +V+GAR +
Sbjct:   31 VTGIPGGSILPVYDALSQSTQIRHILARHEQGAGFIAQGMARTDGKPAVCMACSGPGATNLVTAIADARLDSIPLICITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRHIEELPQVMSDAFRIAQSGRPGPVWIDIPKDVQTAVFEI-------ETQPAMAEKAAAPAFSEESIRDAAAMINAAKRPVLYLGGGVINAPA--RVRELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGVRSTNYILQEADLLIVLGARFD 287          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB_CYACA (Acetolactate synthase large subunit OS=Cyanidium caldarium GN=ilvB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.642e-18
Identity = 58/223 (26.01%), Postives = 103/223 (46.19%), Query Frame = 2
Query:  215 TGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL-------XXXXXRSLAIGQCDVALVVGARLN 862
            T + G+ L  SGPG  + + G++   +++ PI+ I+G   +   G   FQE+D      P  K +   +D  ++   V++    +  GRPG   +D+P DV  +  +                    G  +   I+K   +L E+K+P++  G GA  +RA+ E+++L     IP   T MGKG   + +PL             + A+ +CD+ + +GAR +
Sbjct:   74 TNEVGVCLATSGPGATNLVTGIATAQMDSVPIIAITGQVSRAFIGTDAFQEVDIFGITLPIVKHSFVVRDPRDISTIVSEAFYISKHGRPGAVLIDVPKDVGLEEFNYHDYDSIRDHKPITKYRPIYGPSIR-QIEKFKKMLLESKQPILYVGGGAVMSRAQHEIEELASFIKIPVTTTLMGKGSFNEYNPLYLGMLGMHGTAYANFAVSECDLLIALGARFD 295          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB1_MAIZE (Acetolactate synthase 1, chloroplastic OS=Zea mays GN=ALS1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.885e-18
Identity = 63/241 (26.14%), Postives = 112/241 (46.47%), Query Frame = 2
Query:  164 FHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQ-TISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL-------XXXXXRSLAIGQCDVALVVGARLN 862
            F +EQ            +G+ G+ +  SGPG  + ++ L++ ++++ P+V I+G   ++  G   FQE   VE  +  +K      D+ ++P+ V +    A SGRPG   +D+P D+  Q  + V             +       +    +++ + L+ E+++P++  G G A A  E EL++ VE TGIP   T MG G  P   PL             + A+ + D+ L +G R +
Sbjct:  109 FRHEQGEAFAASGYARSSGRVGVCIATSGPGATNLVSALADALLDSVPMVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRVVQEAFFLASSGRPGPVLVDIPKDIQQQMAVPVWDKPMSLPGYIARLPKPPATEL----LEQVLRLVGESRRPVLYVGGGCA-ASGE-ELRRFVELTGIPVTTTLMGLGNFPSDDPLSLRMLGMHGTVYANYAVDKADLLLALGVRFD 343          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVBL_CAEEL (Acetolactate synthase-like protein OS=Caenorhabditis elegans GN=T26C12.1 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.004e-17
Identity = 67/311 (21.54%), Postives = 125/311 (40.19%), Query Frame = 2
Query:    2 SSPLQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGI---------------------------VNSDIDKAVSLLKEAKKPLIVFGKGAAYARAE-GELKKLVESTGIPFLPTPMGKGLLPDTHPLXXXXXRSLAIGQCDVALVVG 850
            S+  Q  + ++  G  L A  L       +F + G  ++ +   A +LG++ +   +E            L    G+    +GPG  + +  + N  +   P+++I G+      GRG  Q++DQ+   +P  K+  + + + ++   V + ++ A SG PG  +++ P DVL+    V             I+      +                            +  I + V L+K AK+P+++ G  A     +  +L K VE+ G P     M +GLL   HPL     R  A+   D+ ++ G
Sbjct:   45 SNAFQVDEKSKRHGGELVASVLKAHDVEEIFVLCGGHISPILVAAEKLGIKIVDTRHEVTAVFAADAVARLRQSIGVAAVTAGPGLTNTITAVKNAQMAESPLLLIGGAAPTLLKGRGALQDIDQMVLFRPLCKYVARVERLRDIVPTVREAIKAAKSGCPGPVFVEFPVDVLYPYELVVKEIGFNPNAKGFIQRALNFYLRCHVSRQFGNAWAPQTITPLPTNIPMPKSEKIQEIVQLVKSAKRPVLLIGSQATLPPVKPADLVKAVEALGCPVFLGGMARGLLGKDHPLQMRQVRRDALKDADLTILAG 355          
The following BLAST results are available for this feature:
BLAST of FC878382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
ILVB1_BRANA1.829e-1929.67Acetolactate synthase 1, chloroplastic OS=Brassica... [more]
ILVB_ARATH4.075e-1928.23Acetolactate synthase, chloroplastic OS=Arabidopsi... [more]
ILVI_HAEIN9.079e-1924.91Acetolactate synthase large subunit OS=Haemophilus... [more]
ILVB_KLEPN9.079e-1923.97Acetolactate synthase, catabolic OS=Klebsiella pne... [more]
ILVB_MYCAV1.549e-1826.27Acetolactate synthase OS=Mycobacterium avium GN=il... [more]
ILVB_YEAST2.023e-1827.24Acetolactate synthase catalytic subunit, mitochond... [more]
ILVB_ECOLI2.642e-1824.81Acetolactate synthase isozyme 1 large subunit OS=E... [more]
ILVB_CYACA2.642e-1826.01Acetolactate synthase large subunit OS=Cyanidium c... [more]
ILVB1_MAIZE5.885e-1826.14Acetolactate synthase 1, chloroplastic OS=Zea mays... [more]
ILVBL_CAEEL1.004e-1721.54Acetolactate synthase-like protein OS=Caenorhabdit... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CG07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878382 ID=FC878382; Name=FC878382; organism=Citrus clementina; type=EST; length=864bp
ATCATCTCCATTGCAAAATTCCCAAAATGCCCAGATCGACGGCAACACCC
TGGCGGCCAAATCCTTGTCACTATTCGGTGCCACCCACATGTTCGGCGTG
GTGGGCATTCCCGTTACTTCCTTAGCGAACCTGGCCGTCCAGCTCGGCGT
CCGGTTCATCGCCTTCCACAATGAGCAGTCCGCTGGCTACGCCGCCTCAG
CCTACGGATACCTGACTGGAAAACCCGGCATTCTGTTAACTGTTTCCGGT
CCGGGTTGCGTGCACGGTCTGGCTGGTCTCTCGAATGGGATGATTAACAC
CTGGCCAATCGTCATGATATCCGGCTCCTGCGATCAGAAAGATTTTGGCC
GCGGCGATTTTCAAGAACTCGACCAAGTGGAAGCCGTCAAGCCTTTTTCG
AAATTTGCTGTAAAAGCGAAGGACATTACGGAAGTTCCCAAGTGTGTCGC
TCAGGTTCTTGAACGGGCTGTTTCGGGGCGGCCCGGCGGGTGTTATTTGG
ATCTACCCACTGATGTTTTACATCAAACGATATCGGTATCTGAAGCGGAG
AAGCTTCTGAAGGAAGCGGAGAGTGCCATAGAAACGGTGACGCAAGGGGG
GATTGTGAATTCTGATATCGATAAAGCGGTGTCTTTGCTTAAAGAAGCAA
AGAAGCCGTTGATTGTGTTTGGGAAAGGCGCAGCTTATGCGCGAGCTGAG
GGTGAATTGAAGAAATTAGTTGAAAGTACTGGGATTCCATTTTTGCCTAC
TCCAATGGGTAAAGGTCTGTTGCCTGATACCCATCCGCTTGCTGCTGCCG
CTGCGAGGTCATTAGCCATAGGTCAATGTGATGTTGCGCTTGTTGTTGGT
GCGAGGCTTAATTG
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