FC878382

Overview
NameFC878382
Unique NameFC878382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length864
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB2_ORYSJ (Probable acetolactate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=ALS2 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.004e-17
Identity = 60/224 (26.79%), Postives = 107/224 (47.77%), Query Frame = 2
Query:  215 TGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEG-ELKKLVESTGIPFLPTPMGKGLLPDTHPL-------XXXXXRSLAIGQCDVALVVGARLN 862
            +G+PG+ +  SGPG  + ++ L++  +++ P+V I+G   ++  G   FQE   VE  +  +K      D+ ++P+ + +    A +GRPG   +D+P D+  Q                 I  + +    N  +D+ + L+ +A++P++  G G +   A G EL++ VE TGIP   T MG G  P   PL             + A+   D+ L +G R +
Sbjct:  146 SGRPGVCVATSGPGATNLVSALADAHLDSVPLVAITGQAPRRMIGTDAFQETPIVEFTRSITKHNYLILDVDDIPRVINEAFFLASTGRPGPVLVDIPKDIQQQ--MAVPSWDAPMRLPGYISRLPKPPAANL-LDEVIRLVGDAERPVLYVGGGCS---ASGYELRRFVELTGIPVTTTLMGIGNFPSDDPLSLRMLGMHGTVYANYAVDNADLLLALGVRFD 363          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB2_BRANA (Acetolactate synthase 2, chloroplastic OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.311e-17
Identity = 58/209 (27.75%), Postives = 102/209 (48.80%), Query Frame = 2
Query:  149 VRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLP 775
            +R +   +EQ            +GKPGI +  SGPG ++ ++GL++ + ++ P++ I+G   ++  G   FQE   VE  +  +K      ++ ++P+ V +    A S RPG   +D+P DV  Q                 + T+ +   V S +++ + L+ E+K+P++  G G     +  EL++ VE TGIP   T MG G  P
Sbjct:  112 IRNVLPRHEQGGIFAAEGYARSSGKPGICIATSGPGAMNLVSGLADALFDSVPLIAITGQVPRRMIGTMAFQETPVVEVTRTITKHNYLVMEVDDIPRIVREAFFLATSVRPGPVLIDVPKDVQQQ--FAIPNWEQPMRLPLYMSTMPKPPKV-SHLEQILRLVSESKRPVLYVGGGC--LNSSEELRRFVELTGIPVASTFMGLGSYP 315          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB_PORUM (Acetolactate synthase large subunit OS=Porphyra umbilicalis GN=ilvB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.236e-17
Identity = 67/278 (24.10%), Postives = 120/278 (43.17%), Query Frame = 2
Query:   62 SLSLFGATHMFGVVG---IPVTSLANLAVQLG-VRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP-------LXXXXXRSLAIGQCDVALVVGARLN 862
            S+   G  H+FG  G   +P+        +L  ++ I   +EQ            TGK G+    SGPG  + ++G++   I++ PI+ I+G   +   G   FQE+D      P  K +   +D  ++ + VA+       GRPG   +D+P DV  +  +                      + +  I  A  +++++ +PL+  G GA  + A   +K+LV+   IP   T MGKG+  +          +      + A+ +CD+ + +GAR +
Sbjct:   20 SIVRHGVIHIFGYPGGAILPIYDELYAWEELSLIKNILVRHEQGASHAADAYSRSTGKVGVCFATSGPGATNLVSGIATAHIDSVPILAITGQVGRPFIGTDAFQEVDIFGITLPIVKHSYVVRDPRDMSRIVAEAFYICKHGRPGPVLIDVPKDVGLEKFNYFSVEPGQVKIPGCRPL---SNLKSRQILMAAKMIQQSSQPLLYIGGGAIISDAHSIIKELVDLYKIPVTTTLMGKGIFNEDSEFCLGMLGMHGTAYANFAVSECDLLIALGARFD 294          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB_PORPU (Acetolactate synthase large subunit OS=Porphyra purpurea GN=ilvB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.236e-17
Identity = 67/278 (24.10%), Postives = 120/278 (43.17%), Query Frame = 2
Query:   62 SLSLFGATHMFGVVG---IPVTSLANLAVQLG-VRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP-------LXXXXXRSLAIGQCDVALVVGARLN 862
            S+   G  H+FG  G   +P+        +L  ++ I   +EQ            TGK G+    SGPG  + ++G++   I++ PI+ I+G   +   G   FQE+D      P  K +   +D  ++ + VA+       GRPG   +D+P DV  +  +                      + +  I  A  +++++ +PL+  G GA  + A   +K+LV+   IP   T MGKG+  +          +      + A+ +CD+ + +GAR +
Sbjct:   20 SIVRHGVIHIFGYPGGAILPIYDELYAWEELSLIKNILVRHEQGASHAADAYSRSTGKVGVCFATSGPGATNLVSGIATAHIDSVPILAITGQVGRPFIGTDAFQEVDIFGITLPIVKHSYVVRDPRDMSRIVAEAFYICKHGRPGPVLIDVPKDVGLEKFNYFSVEPGQVKIPGCRPL---SNLKSRQILMAAKMIQQSSQPLLYIGGGAIISDAHSIIKELVDLYKIPVTTTLMGKGIFNEDSEFCLGMLGMHGTAYANFAVSECDLLIALGARFD 294          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB2_MAIZE (Acetolactate synthase 2, chloroplastic OS=Zea mays GN=ALS2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.506e-17
Identity = 63/240 (26.25%), Postives = 109/240 (45.42%), Query Frame = 2
Query:  164 FHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL-------XXXXXRSLAIGQCDVALVVGARLN 862
            F +EQ            +G+ G+ +  SGPG  + ++ L++ ++++ P+V I+G   ++  G   FQE   VE  +  +K      D+ ++P+ V +    A SGRPG   +D+P D+  Q ++V                          +++ + L+ E+++P++  G G A A  E EL + VE TGIP   T MG G  P   PL             + A+ + D+ L  G R +
Sbjct:  109 FRHEQGEAFAASAYARSSGRVGVCIATSGPGATNLVSALADALLDSVPMVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRVVQEAFFLASSGRPGPVLVDIPKDI-QQQMAVPAWDTPMSLPGYIARLPKPP--ATEFLEQVLRLVGESRRPVLYVGGGCA-ASGE-ELCRFVELTGIPVTTTLMGLGNFPSDDPLSLRMLGMHGTVYANYAVDKADLLLAFGVRFD 343          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB_PORYE (Acetolactate synthase large subunit OS=Porphyra yezoensis GN=ilvB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.498e-17
Identity = 68/296 (22.97%), Postives = 128/296 (43.24%), Query Frame = 2
Query:    8 PLQNSQNAQIDGNTLAAKSLSLFGATHMFGVVG---IPVTSLANLAVQLG-VRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHP-------LXXXXXRSLAIGQCDVALVVGARLN 862
            PL+   +++  G      S+   G  H+FG  G   +P+        +   ++ I   +EQ            TG+ G+    SGPG  + ++G++   I++ PI+ I+G   +   G   FQE+D      P  K +   +D  ++ + VA+       GRPG   +D+P DV  +  +                 +T   + +  I  A  +++++ +PL+  G GA  + +   +K+LV+   IP   T MGKG+  +          +      + A+ +CD+ + +GAR +
Sbjct:    2 PLKQRVSSEKTGAFALLDSIVRHGVKHIFGYPGGAILPIYDELYAWEEASLIKHILVRHEQGAAHAADSYSRSTGEVGVCFATSGPGATNLVSGIATAHIDSVPILAITGQVGRAFIGTDAFQEVDIFGITLPIVKHSYVVRDPRDMSRIVAEAFFICKHGRPGPVLIDVPKDVGLEKFN-YFSVEPGKVNIPGCRPIT--SLKSRQILMAAKMIQQSSQPLLYIGGGAIISDSHQIIKELVDFYKIPVTTTLMGKGIFNEDSDYCLGMLGMHGTAYANFAVSECDLLIALGARFD 294          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB1_ORYSJ (Acetolactate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=ALS1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.498e-17
Identity = 59/241 (24.48%), Postives = 109/241 (45.23%), Query Frame = 2
Query:  164 FHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQ-TISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL-------XXXXXRSLAIGQCDVALVVGARLN 862
            F +EQ            +G+ G+ +  SGPG  + ++ L++ ++++ P+V I+G   ++  G   FQE   VE  +  +K      D+ ++P+ + +    A SGRPG   +D+P D+  Q  + V             +       +    +++ + L+ E+++P++  G G   + +  EL+  VE TGIP   T MG G  P   PL             + A+ + D+ L  G R +
Sbjct:  115 FRHEQGEAFAASGYARASGRVGVCVATSGPGATNLVSALADALLDSVPMVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVEDIPRVIQEAFFLASSGRPGPVLVDIPKDIQQQMAVPVWDTSMNLPGYIARLPKPPATEL----LEQVLRLVGESRRPILYVGGGC--SASGDELRWFVELTGIPVTTTLMGLGNFPSDDPLSLRMLGMHGTVYANYAVDKADLLLAFGVRFD 349          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: XSC_ALCXX (Sulfoacetaldehyde acetyltransferase OS=Alcaligenes xylosoxydans xylosoxydans GN=xsc PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 5.508e-16
Identity = 65/268 (24.25%), Postives = 112/268 (41.79%), Query Frame = 2
Query:   77 GATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL-------XXXXXRSLAIGQCDVALVVGARL 859
            G + MFG++G       ++    G+R I   +EQ           ++G+ G+++  +GPG  + + G++       P+V+++        G G FQE +Q+   + F+K+     +   + +   +V +RA+S   G   L++P D  +  I                  V +G    + +  AV LLK AK P+I+ G G     A  E K+L E  G P     +     P  HPL                I Q DV + +G+R+
Sbjct:   30 GVSEMFGIMGSAFMDAMDIFAPAGIRLIPVVHEQGAAHMADGYARVSGRHGVVIGQNGPGISNCVTGIAAAYWAHSPVVIVTPETGTMGMGLGGFQEANQLPMFQEFTKYQGHVCNPKRMAEFTGRVFDRAMS-EMGPTQLNIPRDYFYGEIECEIPKPM---------RVDRGHGGEASLQAAVELLKTAKFPVILAGGGVVMGDAVEEAKQLAERLGAPVATGYLRNDAFPAKHPLWAGPLGYQGSKAAMKLIAQADVVIALGSRM 287          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: XSC_RHIME (Probable sulfoacetaldehyde acetyltransferase OS=Rhizobium meliloti GN=xsc PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.395e-16
Identity = 69/275 (25.09%), Postives = 114/275 (41.45%), Query Frame = 2
Query:   59 KSLSLFGATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTH-----PLXXXXXRSL--AIGQCDVALVVGARLN 862
            K L + G  H FG++G  +  +++L  + G+RF    +E             TG   + +  +GPG    +  +     N  P++M++     K  G+G FQE+DQ+   +    +  + +D + +P+ + +V+E+A  G      +++P D   Q I V                   GG   + I +A  LL EAK P+I+ G G     A  E   L E    P           P +H     PL     ++    I + DV L +G RLN
Sbjct:   11 KVLQMHGIEHAFGIIGSAMMPVSDLFPKAGIRFWDCAHETNAGMMADGFSRATGTMSMAIGQNGPGVTGFITAMKTAYWNHTPLLMVTPQAANKTIGQGGFQEVDQMAMFEEMVCYQEEVRDPSRIPEVLNRVIEKAWRG-CAPAQINIPRDFWTQVIDVDLPRIVRFER-------PAGG--PAAIAQAARLLSEAKFPVILNGAGVVIGNAIQESMALAEKLDAPVCCGYQHNDAFPGSHRLSVGPLGYNGSKAAMELISKADVVLALGTRLN 275          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: YDAP_BACSU (Putative thiamine pyrophosphate-containing protein ydaP OS=Bacillus subtilis GN=ydaP PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.954e-15
Identity = 65/273 (23.81%), Postives = 117/273 (42.86%), Query Frame = 2
Query:   65 LSLFGATHMFGVVGIPVTS----LANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLXXXXXRSL-------AIGQCDVALVVG 850
            L  +G  H++G+ G  +      L +   QL  +FI   +E+           LTGK G+ L+++GPG VH L GL +   +  P++ I+G     + GR  FQE+   +  +  + F  +      +P  + Q +  A S + G   L +  D+  + I               +E   +       +      +  AKKP+I+ G+G    +A+ EL +  +    P + T   KG++PD HP        +       A+ +CD+ +++G
Sbjct:   14 LEQWGVDHVYGIPGDSINEFIEELRHERNQL--KFIQTRHEEVAALAAAAEAKLTGKIGVCLSIAGPGAVHLLNGLYDAKADGAPVLAIAGQVSSGEVGRDYFQEIKLEQMFEDVAVFNREVHSAESLPDLLNQAIRTAYS-KKGVAVLSVSDDLFAEKIKREPVYTSPVYIEGNLEPKKE------QLVTCAQYINNAKKPIILAGQG--MKKAKRELLEFADKAAAPIVVTLPAKGVVPDKHPHFLGNLGQIGTKPAYEAMEECDLLIMLG 275          
The following BLAST results are available for this feature:
BLAST of FC878382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
ILVB2_ORYSJ1.004e-1726.79Probable acetolactate synthase 2, chloroplastic OS... [more]
ILVB2_BRANA1.311e-1727.75Acetolactate synthase 2, chloroplastic OS=Brassica... [more]
ILVB_PORUM2.236e-1724.10Acetolactate synthase large subunit OS=Porphyra um... [more]
ILVB_PORPU2.236e-1724.10Acetolactate synthase large subunit OS=Porphyra pu... [more]
ILVB2_MAIZE6.506e-1726.25Acetolactate synthase 2, chloroplastic OS=Zea mays... [more]
ILVB_PORYE8.498e-1722.97Acetolactate synthase large subunit OS=Porphyra ye... [more]
ILVB1_ORYSJ8.498e-1724.48Acetolactate synthase 1, chloroplastic OS=Oryza sa... [more]
XSC_ALCXX5.508e-1624.25Sulfoacetaldehyde acetyltransferase OS=Alcaligenes... [more]
XSC_RHIME9.395e-1625.09Probable sulfoacetaldehyde acetyltransferase OS=Rh... [more]
YDAP_BACSU7.954e-1523.81Putative thiamine pyrophosphate-containing protein... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CG07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878382 ID=FC878382; Name=FC878382; organism=Citrus clementina; type=EST; length=864bp
ATCATCTCCATTGCAAAATTCCCAAAATGCCCAGATCGACGGCAACACCC
TGGCGGCCAAATCCTTGTCACTATTCGGTGCCACCCACATGTTCGGCGTG
GTGGGCATTCCCGTTACTTCCTTAGCGAACCTGGCCGTCCAGCTCGGCGT
CCGGTTCATCGCCTTCCACAATGAGCAGTCCGCTGGCTACGCCGCCTCAG
CCTACGGATACCTGACTGGAAAACCCGGCATTCTGTTAACTGTTTCCGGT
CCGGGTTGCGTGCACGGTCTGGCTGGTCTCTCGAATGGGATGATTAACAC
CTGGCCAATCGTCATGATATCCGGCTCCTGCGATCAGAAAGATTTTGGCC
GCGGCGATTTTCAAGAACTCGACCAAGTGGAAGCCGTCAAGCCTTTTTCG
AAATTTGCTGTAAAAGCGAAGGACATTACGGAAGTTCCCAAGTGTGTCGC
TCAGGTTCTTGAACGGGCTGTTTCGGGGCGGCCCGGCGGGTGTTATTTGG
ATCTACCCACTGATGTTTTACATCAAACGATATCGGTATCTGAAGCGGAG
AAGCTTCTGAAGGAAGCGGAGAGTGCCATAGAAACGGTGACGCAAGGGGG
GATTGTGAATTCTGATATCGATAAAGCGGTGTCTTTGCTTAAAGAAGCAA
AGAAGCCGTTGATTGTGTTTGGGAAAGGCGCAGCTTATGCGCGAGCTGAG
GGTGAATTGAAGAAATTAGTTGAAAGTACTGGGATTCCATTTTTGCCTAC
TCCAATGGGTAAAGGTCTGTTGCCTGATACCCATCCGCTTGCTGCTGCCG
CTGCGAGGTCATTAGCCATAGGTCAATGTGATGTTGCGCTTGTTGTTGGT
GCGAGGCTTAATTG
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