FC878382

Overview
NameFC878382
Unique NameFC878382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length864
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB_CRYNV (Acetolactate synthase, mitochondrial OS=Cryptococcus neoformans var. grubii GN=ILV2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.314e-14
Identity = 64/255 (25.10%), Postives = 108/255 (42.35%), Query Frame = 2
Query:  155 FIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTI-------SVXXXXXXXXXXXXXIETVTQGGIVNSDID---KAVSLLKEAKKPLIVFGKGAAYARAEGE--LKKLVESTGIPFLPTPMGKGLLPDTHP-------LXXXXXRSLAIGQCDVALVVGARLN 862
            F+   +EQ           ++GKPG++L  SGPG  + +  + + + +  P+V+  G       G   FQE D V   +  +K+ V  KDI E+P+ + +  + A +GRPG   +DLP DV    +       SV               +      +  D D   +A  ++ +AK+P+I  G G   +  EG   LK+L +   IP   T  G G   +          +      + A+ + DV + +G R +
Sbjct:  167 FVLPRHEQGAGHMAEGYARVSGKPGVVLVTSGPGATNVITPMQDALSDGVPMVVFCGQVATNLIGSDAFQEADVVGISRSCTKWNVMVKDIAELPRRINEAFKIATTGRPGPVLVDLPKDVTAAILRTPIPAKSVQPGHSPYLPSNPLNPSSQPSDPLPGDADLITEAAQMINKAKRPIIFAGNG-VLSSPEGPKLLKELSDKGRIPVTTTLQGLGAFDERDEKSLHMIGMHGSAYANFAMQEADVLIALGVRFD 420          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB_KLETE (Acetolactate synthase, catabolic OS=Klebsiella terrigena GN=budB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.947e-14
Identity = 48/211 (22.75%), Postives = 83/211 (39.34%), Query Frame = 2
Query:   41 GNTLAAKSLSLFGATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFG 673
            G  L    L   G   +FG+ G  +  + +  +   +R I   +E            +TGK G+ L  SGPGC + + G++       P+V + G+  + D  +   Q +D V    P +K+AV+      + + V+     A  GRPG  ++ LP D++    S                    G   +  +D     +  AK P+ + G
Sbjct:   13 GADLIVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAKLVHQSMDTVAMFSPVTKYAVEVTASDALAEVVSNAFRAAEQGRPGSAFVSLPQDIVDGPAS--------GSTLPASRAPQMGAAPDGAVDSVAQAIAAAKNPIFLLG 215          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: ILVB_CRYNE (Acetolactate synthase, mitochondrial OS=Cryptococcus neoformans GN=ILV2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.155e-14
Identity = 63/258 (24.42%), Postives = 107/258 (41.47%), Query Frame = 2
Query:  155 FIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSD-------------IDKAVSLLKEAKKPLIVFGKGAAYARAEGE--LKKLVESTGIPFLPTPMGKGLLPDTHP-------LXXXXXRSLAIGQCDVALVVGARLN 862
            F+   +EQ           ++GKPG++L  SGPG  + +  + + + +  P+V+  G       G   FQE D V   +  +K+ V  KDI E+P+ + +  + A +GRPG   +DLP DV   T ++                      +N               I +A  ++ +AK+P+I  G G   +  EG   LK+L +   IP   T  G G   +          +      + A+ + DV + +G R +
Sbjct:  167 FVLPRHEQGAGHMAEGYARVSGKPGVVLVTSGPGATNVITPMQDALSDGVPMVVFCGQVATNLIGSDAFQEADVVGISRSCTKWNVMVKDIAELPRRINEAFKIATTGRPGPVLVDLPKDV---TAAILRTPIPAKSAQPGHSPYLPSNPLNPSSQPSDPLPGDADLITEAAQMINKAKRPIIFAGNG-VLSSPEGPKLLKELSDKGRIPVTTTLQGLGAFDERDEKSLHMIGMHGSAYANFAMQEADVLIALGVRFD 420          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: XSC_ALCDF (Sulfoacetaldehyde acetyltransferase OS=Alcaligenes defragrans GN=xsc PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 8.794e-14
Identity = 61/268 (22.76%), Postives = 106/268 (39.55%), Query Frame = 2
Query:   77 GATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPL-------XXXXXRSLAIGQCDVALVVGARL 859
            G T +FG++G       ++    G++ I   +EQ           ++G+ G+++  +GPG  + +  ++       P+V+++        G G FQE  Q+   + F+K+         + +  A+   RA     G   L++P D  +  I                + + +G      +D A  LL EAK P+I+ G G     A  E K L E  G P + + +     P +HPL                +   DV L +G RL
Sbjct:   29 GVTEIFGIMGSAFMDAMDIFAPAGIKLIPVVHEQGAAHMADGFARVSGRTGVVIGQNGPGISNCVTAIAAAYWAHTPVVIVTPEAGTTGIGLGGFQEARQLPMFQEFTKYQGHVTHPARMAEYTARCFARA-RDEMGPAQLNIPRDYFYGKIKCEIPLP---------QPLDRGPGGAQSLDAAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPVVNSYLHNDSFPASHPLWCGPLGYQGSKAAMKLLADADVVLALGTRL 286          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: POXB_LACPL (Pyruvate oxidase OS=Lactobacillus plantarum GN=pox5 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 7.444e-13
Identity = 65/291 (22.34%), Postives = 120/291 (41.24%), Query Frame = 2
Query:   11 LQNSQNAQIDGNTLAAKSLSLFGATHMFGVVGIPVTSLANL--AVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXI--ETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPDTHPLXXXXXRSL-------AIGQCDVALVVG 850
            ++ ++   I       K L  +G  H++G+ G  + S+ +   A +  + +I   +E+           LTGK G+    +GPG  H + GL +   +  P++ + G           FQE+++       + + V A +   +P  + + + RA +   G   + +P D+  Q I               +  E   Q       + +    L  A++PLI +G GA   +A  EL++L ++  IP + T   KG++ D +P        +       A+ Q DV L VG
Sbjct:    3 MKQTKQTNILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYA-HQGVAVVQIPVDLPWQQIPAEDWYASANSYQTPLLPEPDVQA------VTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVG 284          
BLAST of FC878382 vs. ExPASy Swiss-Prot
Match: XSC_DESTI (Sulfoacetaldehyde acetyltransferase OS=Desulfonispora thiosulfatigenes GN=xsc PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.335e-11
Identity = 58/269 (21.56%), Postives = 109/269 (40.52%), Query Frame = 2
Query:   77 GATHMFGVVGIPVTSLANLAVQLGVRFIAFHNEQXXXXXXXXXXXLTGKPGILLTVSGPGCVHGLAGLSNGMINTWPIVMISGSCDQKDFGRGDFQELDQVEAVKPFSKFAVKAKDITEVPKCVAQVLERAVSGRPGGCYLDLPTDVLHQTISVXXXXXXXXXXXXXIETVTQGGIVNSDIDKAVSLLKEAKKPLIVFGKGAAYARAEGELKKLVESTGIPFLPTPMGKGLLPD-----THPLXXXXXRS--LAIGQCDVALVVGARLN 862
            G TH+ G++G     + +L    G+ FIA  +EQ           +TGK  + +  +GPG  + +  ++       P+V++  S      G   FQE DQV   +  +K  ++    +     +      A + R G  Y+D+P +  +  +                    +G    +++ +A  +L  AK P+I+ G+G   A A  E+K++      P   + +     P        P+     +S   ++   DV L +G+RL+
Sbjct:   20 GVTHVTGILGSAFMDMLDLWPTAGIEFIAVRHEQTAGHMQDAYCRITGKASVCIGQNGPGVTNLVTCVAAANQAHTPMVVLGPSAGTPTVGWDGFQECDQVSIFRSITKQVLQVPHPSRAGDVLRTAFRIAYAER-GPVYVDIPRNYFYGEVYEEILRPDQYRAMN-----VRGAGDATELARATEILAAAKNPVIISGRGVVDADAFAEVKEIAHMLTAPVAMSYLHNDTYPADDELWVGPIGYMGAKSAMYSLQDADVILAIGSRLS 282          
The following BLAST results are available for this feature:
BLAST of FC878382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
ILVB_CRYNV2.314e-1425.10Acetolactate synthase, mitochondrial OS=Cryptococc... [more]
ILVB_KLETE3.947e-1422.75Acetolactate synthase, catabolic OS=Klebsiella ter... [more]
ILVB_CRYNE5.155e-1424.42Acetolactate synthase, mitochondrial OS=Cryptococc... [more]
XSC_ALCDF8.794e-1422.76Sulfoacetaldehyde acetyltransferase OS=Alcaligenes... [more]
POXB_LACPL7.444e-1322.34Pyruvate oxidase OS=Lactobacillus plantarum GN=pox... [more]
XSC_DESTI5.335e-1121.56Sulfoacetaldehyde acetyltransferase OS=Desulfonisp... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CG07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878382 ID=FC878382; Name=FC878382; organism=Citrus clementina; type=EST; length=864bp
ATCATCTCCATTGCAAAATTCCCAAAATGCCCAGATCGACGGCAACACCC
TGGCGGCCAAATCCTTGTCACTATTCGGTGCCACCCACATGTTCGGCGTG
GTGGGCATTCCCGTTACTTCCTTAGCGAACCTGGCCGTCCAGCTCGGCGT
CCGGTTCATCGCCTTCCACAATGAGCAGTCCGCTGGCTACGCCGCCTCAG
CCTACGGATACCTGACTGGAAAACCCGGCATTCTGTTAACTGTTTCCGGT
CCGGGTTGCGTGCACGGTCTGGCTGGTCTCTCGAATGGGATGATTAACAC
CTGGCCAATCGTCATGATATCCGGCTCCTGCGATCAGAAAGATTTTGGCC
GCGGCGATTTTCAAGAACTCGACCAAGTGGAAGCCGTCAAGCCTTTTTCG
AAATTTGCTGTAAAAGCGAAGGACATTACGGAAGTTCCCAAGTGTGTCGC
TCAGGTTCTTGAACGGGCTGTTTCGGGGCGGCCCGGCGGGTGTTATTTGG
ATCTACCCACTGATGTTTTACATCAAACGATATCGGTATCTGAAGCGGAG
AAGCTTCTGAAGGAAGCGGAGAGTGCCATAGAAACGGTGACGCAAGGGGG
GATTGTGAATTCTGATATCGATAAAGCGGTGTCTTTGCTTAAAGAAGCAA
AGAAGCCGTTGATTGTGTTTGGGAAAGGCGCAGCTTATGCGCGAGCTGAG
GGTGAATTGAAGAAATTAGTTGAAAGTACTGGGATTCCATTTTTGCCTAC
TCCAATGGGTAAAGGTCTGTTGCCTGATACCCATCCGCTTGCTGCTGCCG
CTGCGAGGTCATTAGCCATAGGTCAATGTGATGTTGCGCTTGTTGTTGGT
GCGAGGCTTAATTG
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