FC878383

Overview
NameFC878383
Unique NameFC878383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length770
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878383_ssr53 microsatellite FC878383_ssr53:53..62. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878383_ssr217 microsatellite FC878383_ssr217:217..228. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10350 contig Ccv1_Contig10350:18..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878383 vs. ExPASy Swiss-Prot
Match: H2B7_ORYSJ (Histone H2B.7 OS=Oryza sativa subsp. japonica GN=H2B.7 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.067e-41
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  241 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of FC878383 vs. ExPASy Swiss-Prot
Match: H2B7_ORYSI (Histone H2B.7 OS=Oryza sativa subsp. indica GN=H2B.7 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.067e-41
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  241 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of FC878383 vs. ExPASy Swiss-Prot
Match: H2B4_ORYSJ (Histone H2B.4 OS=Oryza sativa subsp. japonica GN=H2B.4 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.067e-41
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  241 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of FC878383 vs. ExPASy Swiss-Prot
Match: H2B4_ORYSI (Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B.4 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.067e-41
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  241 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of FC878383 vs. ExPASy Swiss-Prot
Match: H2B3_WHEAT (Histone H2B.3 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 7.067e-41
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  241 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   47 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 138
[Close]
BLAST of FC878383 vs. ExPASy Swiss-Prot
Match: H2B3_ORYSJ (Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H2B.3 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.067e-41
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  241 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of FC878383 vs. ExPASy Swiss-Prot
Match: H2B3_ORYSI (Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B.3 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.067e-41
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  241 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of FC878383 vs. ExPASy Swiss-Prot
Match: H2B10_ORYSJ (Histone H2B.10 OS=Oryza sativa subsp. japonica GN=H2B.10 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.067e-41
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  241 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of FC878383 vs. ExPASy Swiss-Prot
Match: H2B10_ORYSI (Histone H2B.10 OS=Oryza sativa subsp. indica GN=H2B.10 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.067e-41
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  241 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153
[Close]
BLAST of FC878383 vs. ExPASy Swiss-Prot
Match: H2B2_WHEAT (Histone H2B.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 9.230e-41
Identity = 84/91 (92.31%), Postives = 89/91 (97.80%), Query Frame = 1 
Query:  244 IETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
            +ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   60 VETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150
The following BLAST results are available for this feature:
BLAST of FC878383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B7_ORYSJ7.067e-4191.30Histone H2B.7 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B7_ORYSI7.067e-4191.30Histone H2B.7 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B4_ORYSJ7.067e-4191.30Histone H2B.4 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B4_ORYSI7.067e-4191.30Histone H2B.4 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B3_WHEAT7.067e-4191.30Histone H2B.3 OS=Triticum aestivum PE=1 SV=3[more]
H2B3_ORYSJ7.067e-4191.30Histone H2B.3 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B3_ORYSI7.067e-4191.30Histone H2B.3 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B10_ORYSJ7.067e-4191.30Histone H2B.10 OS=Oryza sativa subsp. japonica GN=... [more]
H2B10_ORYSI7.067e-4191.30Histone H2B.10 OS=Oryza sativa subsp. indica GN=H2... [more]
H2B2_WHEAT9.230e-4192.31Histone H2B.2 OS=Triticum aestivum PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CG08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878383 ID=FC878383; Name=FC878383; organism=Citrus clementina; type=EST; length=770bp
CTCTTATCGTTTCGAAGTAAAAGGAAAAGAAAATATCTACAAGCCTTGCC
TTTCTCTCTCTCTACCAAACCGAAATTAATGGCACCAAAGGCGGAGAAGA
AGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAGACATCGGTGGCCGAG
AAGGCGCCGGCGGAGAAGAAGCCGAAGGCCGGCAAGAAGCTTCCCAAAGA
AGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGAAGAAGAGCATCGAGA
CGTACAAGATTTACATCTTCAAAGTCCTGAAGCAGGTACATCCCGATATC
GGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTCATCAACGATAT
TTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGTACAATAAGA
AGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGAGACTTGTACTT
CCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACCAAAGCTGTTAC
TAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGCATCGGTCGGTGAATTCG
GGTGTTATGTGATTTGTGTAGTTAGTAGTTTAGGCCTTTAATTTTACTAG
ATGAAGTCGTTTTTATGTTTTGTGTTTTCAAATCTTTGGTGGATTTTTAG
GGTTTGTTTGGATGTACTAGAAATTTGGACCTGATCCAGGTGATGTGCAT
GTTCATTATGTTAGAATATGAAAATGAAATATGATTTCGGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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