FC878383

Overview
NameFC878383
Unique NameFC878383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length770
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC878383 vs. ExPASy Swiss-Prot
Match: H2B_ONCMY (Histone H2B OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.056e-36
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:  247 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123
[Close]
BLAST of FC878383 vs. ExPASy Swiss-Prot
Match: H2B_LITVA (Histone H2B (Fragments) OS=Litopenaeus vannamei PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.056e-36
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  247 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   26 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 115
[Close]
BLAST of FC878383 vs. ExPASy Swiss-Prot
Match: H2B3_TIGCA (Histone H2B.3 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.056e-36
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  247 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of FC878383 vs. ExPASy Swiss-Prot
Match: H2B2E_MOUSE (Histone H2B type 2-E OS=Mus musculus GN=Hist2h2be PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 1.056e-36
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:  247 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQT+VRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIANEASRLAHYNKRSTITSREIQTSVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of FC878383 vs. ExPASy Swiss-Prot
Match: H2B1_TIGCA (Histone H2B.1/H2B.2 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.056e-36
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  247 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of FC878383 vs. ExPASy Swiss-Prot
Match: H2B1K_HUMAN (Histone H2B type 1-K OS=Homo sapiens GN=HIST1H2BK PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 1.056e-36
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:  247 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of FC878383 vs. ExPASy Swiss-Prot
Match: H2B1K_BOVIN (Histone H2B type 1-K OS=Bos taurus GN=HIST1H2BK PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 1.056e-36
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:  247 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of FC878383 vs. ExPASy Swiss-Prot
Match: H2B_PATGR (Histone H2B, gonadal OS=Patella granatina PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.379e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  247 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
            E+Y IYI+KVLKQVHPD G+SSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   32 ESYSIYIYKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 121
[Close]
BLAST of FC878383 vs. ExPASy Swiss-Prot
Match: H2B_DROYA (Histone H2B OS=Drosophila yakuba GN=His2B PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.379e-36
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  247 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of FC878383 vs. ExPASy Swiss-Prot
Match: H2B_DROTE (Histone H2B OS=Drosophila teissieri GN=His2B PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.379e-36
Identity = 76/90 (84.44%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:  247 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 516
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
The following BLAST results are available for this feature:
BLAST of FC878383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B_ONCMY1.056e-3683.33Histone H2B OS=Oncorhynchus mykiss PE=1 SV=2[more]
H2B_LITVA1.056e-3684.44Histone H2B (Fragments) OS=Litopenaeus vannamei PE... [more]
H2B3_TIGCA1.056e-3684.44Histone H2B.3 OS=Tigriopus californicus PE=3 SV=2[more]
H2B2E_MOUSE1.056e-3682.22Histone H2B type 2-E OS=Mus musculus GN=Hist2h2be ... [more]
H2B1_TIGCA1.056e-3684.44Histone H2B.1/H2B.2 OS=Tigriopus californicus PE=3... [more]
H2B1K_HUMAN1.056e-3682.22Histone H2B type 1-K OS=Homo sapiens GN=HIST1H2BK ... [more]
H2B1K_BOVIN1.056e-3682.22Histone H2B type 1-K OS=Bos taurus GN=HIST1H2BK PE... [more]
H2B_PATGR1.379e-3683.33Histone H2B, gonadal OS=Patella granatina PE=1 SV=... [more]
H2B_DROYA1.379e-3684.44Histone H2B OS=Drosophila yakuba GN=His2B PE=3 SV=... [more]
H2B_DROTE1.379e-3684.44Histone H2B OS=Drosophila teissieri GN=His2B PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CG08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878383 ID=FC878383; Name=FC878383; organism=Citrus clementina; type=EST; length=770bp
CTCTTATCGTTTCGAAGTAAAAGGAAAAGAAAATATCTACAAGCCTTGCC
TTTCTCTCTCTCTACCAAACCGAAATTAATGGCACCAAAGGCGGAGAAGA
AGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAGACATCGGTGGCCGAG
AAGGCGCCGGCGGAGAAGAAGCCGAAGGCCGGCAAGAAGCTTCCCAAAGA
AGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGAAGAAGAGCATCGAGA
CGTACAAGATTTACATCTTCAAAGTCCTGAAGCAGGTACATCCCGATATC
GGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTCATCAACGATAT
TTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGTACAATAAGA
AGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGAGACTTGTACTT
CCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACCAAAGCTGTTAC
TAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGCATCGGTCGGTGAATTCG
GGTGTTATGTGATTTGTGTAGTTAGTAGTTTAGGCCTTTAATTTTACTAG
ATGAAGTCGTTTTTATGTTTTGTGTTTTCAAATCTTTGGTGGATTTTTAG
GGTTTGTTTGGATGTACTAGAAATTTGGACCTGATCCAGGTGATGTGCAT
GTTCATTATGTTAGAATATGAAAATGAAATATGATTTCGGAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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