FC878385

Overview
NameFC878385
Unique NameFC878385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length831
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878385 vs. ExPASy Swiss-Prot
Match: PFPI_PYRHO (Intracellular protease 1 OS=Pyrococcus horikoshii GN=pfpI PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.039e-13
Identity = 54/168 (32.14%), Postives = 78/168 (46.43%), Query Frame = 2
Query:   86 KVLVPVANGSEPIEALITIDVLRRSGADVAVASVETQLRVDACHGVKVVADALVSDCRDAVFDLIALPGGM-PGATNLKESEVLESIVKKQASDGRLYAAICASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTSRGPGTTMEFVVALVEQL 586
            KVL   AN  E +E +     L+  G +V +AS E    +   HG  V  D          FD + LPGG  P    L E  V  SI +K  S+G+  A+IC  P + + + G+L+G K T YP   + +  A    V++ V  DG  V+SR P     ++   V+ L
Sbjct:    2 KVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERGT-ITGKHGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAV--SIARKMFSEGKPVASICHGPQILISA-GVLRGRKGTSYPGIKDDMINAGVEWVDAEVVVDGNWVSSRVPADLYAWMREFVKLL 165          
BLAST of FC878385 vs. ExPASy Swiss-Prot
Match: PFPI_PYRKO (Intracellular protease 1 OS=Pyrococcus kodakaraensis GN=pfpI PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.193e-13
Identity = 53/168 (31.55%), Postives = 83/168 (49.40%), Query Frame = 2
Query:   86 KVLVPVANGSEPIEALITIDVLRRSGADVAVASVETQLRVDACHGVKVVADALVSDCRDAVFDLIALPGGM-PGATNLKESEVLESIVKKQASDGRLYAAICASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTSRGPGTTMEFVVALVEQL 586
            KVL+  A+G E +E +  +  ++  G +V VAS +   ++   HG  V  D    +     FD + LPGG  P    L E  V  +I KK   DG+  A+IC  P + + + G+LKG K T   +  + +  A A  +++ V  DG  V+SR PG    ++   V+ L
Sbjct:    2 KVLILSADGFEDLELIYPLHRIKEEGHEVYVASFQRG-KITGKHGYTVNVDLAFDEVDPDEFDALVLPGGRAPEIVRLNEKAV--AITKKMFEDGKPVASICHGPQILISA-GVLKGRKGTSTVTIRDDVKNAGAEWIDAEVVVDGNWVSSRHPGDLYAWMREFVKLL 165          
BLAST of FC878385 vs. ExPASy Swiss-Prot
Match: PFPI_PYRAB (Intracellular protease 1 OS=Pyrococcus abyssi GN=pfpI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.675e-12
Identity = 52/168 (30.95%), Postives = 81/168 (48.21%), Query Frame = 2
Query:   86 KVLVPVANGSEPIEALITIDVLRRSGADVAVASVETQLRVDACHGVKVVADALVSDCRDAVFDLIALPGGM-PGATNLKESEVLESIVKKQASDGRLYAAICASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTSRGPGTTMEFVVALVEQL 586
            +VL+  A+  E +E +     L+  G +V VAS +  + +   HG  V  D    +     FD + LPGG  P    L E  V   I KK  S+G+  A+IC  P + + + G+L+G + T YP   + +  A    V++ V  DG  V+SR PG    ++   V+ L
Sbjct:    2 RVLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRGV-ITGKHGYTVNVDLAFEEVNPDEFDALVLPGGRAPERVRLNEKAV--EIAKKMFSEGKPVASICHGPQILISA-GVLRGRRGTSYPGIKDDMINAGVDWVDAEVVVDGNWVSSRVPGDLYAWMREFVKLL 165          
BLAST of FC878385 vs. ExPASy Swiss-Prot
Match: PFPI_PYRFU (Intracellular protease 1 OS=Pyrococcus furiosus GN=pfpI PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.016e-11
Identity = 51/168 (30.36%), Postives = 77/168 (45.83%), Query Frame = 2
Query:   86 KVLVPVANGSEPIEALITIDVLRRSGADVAVASVETQLRVDACHGVKVVADALVSDCRDAVFDLIALPGGM-PGATNLKESEVLESIVKKQASDGRLYAAICASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTSRGPGTTMEFVVALVEQL 586
            K+L   AN  E +E +     L+  G +V +AS E  + +   HG  V  D    +     FD + LPGG  P    L E  V   I +K  ++G+  A IC  P + + + G+LKG K T Y    + +  A    ++  V  DG  V+SR PG    ++   V+ L
Sbjct:    2 KILFLSANEFEDVELIYPYHRLKEEGHEVYIASFEKGV-ITGKHGYSVKVDLTFDEVNPDEFDALVLPGGRAPERVRLNEKAV--EIARKMFTEGKPVATICHGPQILISA-GVLKGRKGTSYIGIRDDMINAGVEWIDREVVVDGNWVSSRHPGDLYAWMREFVKLL 165          
The following BLAST results are available for this feature:
BLAST of FC878385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PFPI_PYRHO7.039e-1332.14Intracellular protease 1 OS=Pyrococcus horikoshii ... [more]
PFPI_PYRKO9.193e-1331.55Intracellular protease 1 OS=Pyrococcus kodakaraens... [more]
PFPI_PYRAB2.675e-1230.95Intracellular protease 1 OS=Pyrococcus abyssi GN=p... [more]
PFPI_PYRFU1.016e-1130.36Intracellular protease 1 OS=Pyrococcus furiosus GN... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DC10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878385 ID=FC878385; Name=FC878385; organism=Citrus clementina; type=EST; length=831bp
ACATTTTCTCCCCAAACAAATTCCTGCTTTGAAAAATCGCATTTTCTCCT
TCACAGCAACAGCTACAATGTCTTCAACTTCCAAAAAGGTTTTGGTGCCT
GTTGCGAACGGGAGTGAGCCGATTGAGGCTTTGATAACGATCGATGTTTT
GAGAAGGTCTGGAGCAGACGTCGCGGTTGCGTCTGTGGAGACACAGCTTC
GTGTCGACGCGTGTCATGGTGTCAAGGTTGTCGCTGATGCTCTGGTGTCT
GACTGCCGCGACGCCGTTTTTGATCTTATAGCTCTTCCCGGTGGCATGCC
CGGTGCTACCAATCTGAAAGAATCTGAAGTATTAGAAAGCATTGTGAAGA
AGCAGGCTTCAGATGGGCGTCTTTATGCTGCTATCTGTGCTTCACCTGCT
GTGGCGTTAGGGTCTTGGGGTCTGTTGAAGGGATTGAAGGCTACTTGTTA
TCCATCATTTATGGAGCAATTAGCTCCTGCTTGTGCAGCAACTGTTGAAT
CAAGAGTACAGCAGGATGGTAAAGTTGTTACGAGTCGTGGACCGGGCACT
ACCATGGAGTTTGTCGTTGCACTTGTTGAGCAGTTGTATGGGAAAGAGAA
AGCTGATGAAGTTTCTGGGCCACTGGTAATGCGTGCAAATCATGGAGATG
AATACACTATTGCTGAGTTCAATCCAATTCAGTGGACATTTGACAATTCT
CCCCAGATTCTTGTGCCTATTGCGAATGGTTCAGAGGAGATGGAAGCTGT
TATGATAATTGATATTCTGCGACGAGCTAAAGCAAACGTTGTGGTTGCAT
CGGTTGAGGATAAACTAGAAATTCTGGCTTC
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