FC878388

Overview
NameFC878388
Unique NameFC878388
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length246
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_VARPS (Adenosylhomocysteinase OS=Variovorax paradoxus (strain S110) GN=ahcY PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.692e-27
Identity = 59/78 (75.64%), Postives = 65/78 (83.33%), Query Frame = 2
Query:   11 VKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            + DLS A +GR EI++AE EMPGLMA R EF  +QP KGA+ITGSLHMTIQTAVLIETL ALGA VRW SCNIFSTQD
Sbjct:   17 IADLSLAAWGRKEIKIAETEMPGLMAIREEFSKAQPLKGARITGSLHMTIQTAVLIETLQALGATVRWASCNIFSTQD 94          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_SYNS3 (Adenosylhomocysteinase OS=Synechococcus sp. (strain CC9311) GN=ahcY PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.692e-27
Identity = 55/81 (67.90%), Postives = 66/81 (81.48%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            ++ + D+  ADFGR E+ +AE EMPGLMA RA++G  +P KGA+I GSLHMTIQTAVLIETL  LGA+VRW SCNIFSTQD
Sbjct:   16 DYVIADIGLADFGRKELNIAETEMPGLMALRAKYGKDKPLKGARIAGSLHMTIQTAVLIETLVELGADVRWASCNIFSTQD 96          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_BORPD (Adenosylhomocysteinase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=ahcY PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.692e-27
Identity = 58/81 (71.60%), Postives = 65/81 (80.25%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            ++ V D+S A +GR E+ +AE EMPGLMA R EF  SQP KGA+I GSLHMTIQT VLIETL ALGAEVRW SCNIFSTQD
Sbjct:   11 DYHVADMSLAAWGRRELAIAETEMPGLMAIREEFAASQPLKGARIAGSLHMTIQTGVLIETLVALGAEVRWASCNIFSTQD 91          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_BARHE (Adenosylhomocysteinase OS=Bartonella henselae GN=ahcY PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.692e-27
Identity = 56/81 (69.14%), Postives = 68/81 (83.95%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            ++ VKD++ A +GR E+++AE EMPGLMACR EF  SQP +GA+I+GSLHMTIQTAVLIETL A+GA VRW S NIFSTQD
Sbjct:    5 DYVVKDIALAAYGRKELDIAETEMPGLMACREEFSSSQPLRGARISGSLHMTIQTAVLIETLKAIGANVRWSSSNIFSTQD 85          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_SYNPW (Adenosylhomocysteinase OS=Synechococcus sp. (strain WH7803) GN=ahcY PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.266e-26
Identity = 54/81 (66.67%), Postives = 67/81 (82.72%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            ++ + D++QA+FGR E+++AE EMPGLMA R ++G  +P KGA+I GSLHMTIQTA LIETL  LGAEVRW SCNIFSTQD
Sbjct:   16 DYVIADINQAEFGRKELDIAETEMPGLMALREKYGTEKPLKGARIAGSLHMTIQTACLIETLVELGAEVRWASCNIFSTQD 96          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_POLSQ (Adenosylhomocysteinase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.266e-26
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 2
Query:   11 VKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            + D+S +DFGR EI +AE EMPGL+A R EF   QP +GA+ITGSLHMTIQTAVLIETL ALGAEV+W SCNIFSTQD
Sbjct:   17 IADISLSDFGRKEIAIAETEMPGLIAIRDEFAAQQPLRGARITGSLHMTIQTAVLIETLEALGAEVQWASCNIFSTQD 94          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_SYNSC (Adenosylhomocysteinase OS=Synechococcus sp. (strain CC9605) GN=ahcY PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.653e-26
Identity = 55/78 (70.51%), Postives = 65/78 (83.33%), Query Frame = 2
Query:   11 VKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            + D++ ADFGR E+++AE EMPGLMA R ++G  +P KGA+I GSLHMTIQTAVLIETL  LGAEVRW SCNIFSTQD
Sbjct:   19 IADINLADFGRKELDIAETEMPGLMALREKYGSEKPLKGARIAGSLHMTIQTAVLIETLVELGAEVRWASCNIFSTQD 96          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_RALEJ (Adenosylhomocysteinase OS=Ralstonia eutropha (strain JMP134) GN=ahcY PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.653e-26
Identity = 58/81 (71.60%), Postives = 66/81 (81.48%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            ++ V D+S A +GR EI +AE EMPGLMA R EF  +QP KGA+I GSLHMTIQTAVLIETL ALGA+VRW SCNIFSTQD
Sbjct:   10 DYLVADISLAGWGRKEIAIAETEMPGLMAIRDEFAAAQPLKGARIAGSLHMTIQTAVLIETLKALGADVRWASCNIFSTQD 90          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_POLNS (Adenosylhomocysteinase OS=Polynucleobacter necessarius (strain STIR1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.653e-26
Identity = 57/78 (73.08%), Postives = 64/78 (82.05%), Query Frame = 2
Query:   11 VKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            + D+S ADFGR EI +AE EMPGL+A R EF   QP +G +ITGSLHMTIQTAVLIETL ALGAEV+W SCNIFSTQD
Sbjct:   17 IADISLADFGRKEIAIAETEMPGLIAIRDEFAAQQPLRGTRITGSLHMTIQTAVLIETLEALGAEVQWASCNIFSTQD 94          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_CHRVO (Adenosylhomocysteinase OS=Chromobacterium violaceum GN=ahcY PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.653e-26
Identity = 56/81 (69.14%), Postives = 67/81 (82.72%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            +F V D++ A +GR E+ +AE EMPGLMA R E+  +QP +GA+I GSLHMT+QTAVLIETLTALGAEVRW SCNIFSTQD
Sbjct:    6 DFHVADIALAGWGRKELNIAETEMPGLMATRDEYHAAQPLRGARIAGSLHMTVQTAVLIETLTALGAEVRWASCNIFSTQD 86          
The following BLAST results are available for this feature:
BLAST of FC878388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
SAHH_VARPS9.692e-2775.64Adenosylhomocysteinase OS=Variovorax paradoxus (st... [more]
SAHH_SYNS39.692e-2767.90Adenosylhomocysteinase OS=Synechococcus sp. (strai... [more]
SAHH_BORPD9.692e-2771.60Adenosylhomocysteinase OS=Bordetella petrii (strai... [more]
SAHH_BARHE9.692e-2769.14Adenosylhomocysteinase OS=Bartonella henselae GN=a... [more]
SAHH_SYNPW1.266e-2666.67Adenosylhomocysteinase OS=Synechococcus sp. (strai... [more]
SAHH_POLSQ1.266e-2673.08Adenosylhomocysteinase OS=Polynucleobacter sp. (st... [more]
SAHH_SYNSC1.653e-2670.51Adenosylhomocysteinase OS=Synechococcus sp. (strai... [more]
SAHH_RALEJ1.653e-2671.60Adenosylhomocysteinase OS=Ralstonia eutropha (stra... [more]
SAHH_POLNS1.653e-2673.08Adenosylhomocysteinase OS=Polynucleobacter necessa... [more]
SAHH_CHRVO1.653e-2669.14Adenosylhomocysteinase OS=Chromobacterium violaceu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CB01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878388 ID=FC878388; Name=FC878388; organism=Citrus clementina; type=EST; length=246bp
TGAATTCAAGGTGAAGGATCTGTCCCAGGCTGACTTCGGCCGCCTCGAAA
TCGAGTTGGCCGAAGTCGAAATGCCGGGGCTCATGGCTTGCCGCGCCGAG
TTCGGCCCTTCACAGCCCTTCAAAGGAGCCAAGATCACCGGTTCACTCCA
CATGACCATCCAGACCGCCGTCCTCATCGAGACCCTCACCGCTCTCGGCG
CCGAAGTCCGCTGGTGCTCCTGCAACATCTTCTCAACCCAAGACCA
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