FC878388

Overview
NameFC878388
Unique NameFC878388
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length246
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_BRUA2 (Adenosylhomocysteinase OS=Brucella abortus (strain 2308) GN=ahcY PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.366e-30
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            +F VKD+S AD+GR E+++AE EMPGLMA R EFG SQP KGA+I+GSLHMTIQTAVLIETL  LGAEVRW SCNIFSTQD
Sbjct:    6 DFVVKDISLADWGRKELDIAETEMPGLMAAREEFGKSQPLKGARISGSLHMTIQTAVLIETLKVLGAEVRWASCNIFSTQD 86          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_BRUA1 (Adenosylhomocysteinase OS=Brucella abortus (strain S19) GN=ahcY PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.366e-30
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            +F VKD+S AD+GR E+++AE EMPGLMA R EFG SQP KGA+I+GSLHMTIQTAVLIETL  LGAEVRW SCNIFSTQD
Sbjct:    6 DFVVKDISLADWGRKELDIAETEMPGLMAAREEFGKSQPLKGARISGSLHMTIQTAVLIETLKVLGAEVRWASCNIFSTQD 86          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_SPHAL (Adenosylhomocysteinase OS=Sphingopyxis alaskensis GN=ahcY PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.223e-29
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            ++ V D+  ADFGR EI +AE EMPGLMA RAE+G SQP KGA+ITGSLHMTIQTAVLIETLTALGAEVRW +CNIFSTQ+
Sbjct:   10 DYVVADIGLADFGRKEINIAETEMPGLMALRAEYGASQPLKGARITGSLHMTIQTAVLIETLTALGAEVRWATCNIFSTQN 90          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_RHOPT (Adenosylhomocysteinase OS=Rhodopseudomonas palustris (strain TIE-1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.598e-29
Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            ++ VKD+  A+FGR EI LAE EMPGLMA R E+GP QP KGAKI GSLHMTIQTAVLIETL ALGAEVRW SCNI+STQD
Sbjct:    7 DYIVKDIGLAEFGRKEISLAETEMPGLMATREEYGPKQPLKGAKIAGSLHMTIQTAVLIETLVALGAEVRWVSCNIYSTQD 87          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_RHOPA (Adenosylhomocysteinase OS=Rhodopseudomonas palustris GN=ahcY PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.598e-29
Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            ++ VKD+  A+FGR EI LAE EMPGLMA R E+GP QP KGAKI GSLHMTIQTAVLIETL ALGAEVRW SCNI+STQD
Sbjct:    7 DYIVKDIGLAEFGRKEISLAETEMPGLMATREEYGPKQPLKGAKIAGSLHMTIQTAVLIETLVALGAEVRWVSCNIYSTQD 87          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_NOVAD (Adenosylhomocysteinase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=ahcY PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.598e-29
Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            ++ V D+  ADFGR EI +AE EMPGLMA R EFG SQP KGA+ITGSLHMTIQTAVLIETL ALGAEVRW +CNIFSTQD
Sbjct:   10 DYVVADIGLADFGRAEIRIAETEMPGLMALREEFGASQPLKGARITGSLHMTIQTAVLIETLVALGAEVRWATCNIFSTQD 90          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_RHOPS (Adenosylhomocysteinase OS=Rhodopseudomonas palustris (strain BisB5) GN=ahcY PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.086e-29
Identity = 61/81 (75.31%), Postives = 69/81 (85.19%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            ++ VKD+  A+FGR EI LAE EMPGLMA R E+GP QP KGA+I GSLHMTIQTAVLIETLTALGA+VRW SCNI+STQD
Sbjct:    7 DYIVKDIGLAEFGRKEISLAETEMPGLMATREEYGPKQPLKGARIAGSLHMTIQTAVLIETLTALGADVRWVSCNIYSTQD 87          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_BACTN (Adenosylhomocysteinase OS=Bacteroides thetaiotaomicron GN=ahcY PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.086e-29
Identity = 61/80 (76.25%), Postives = 70/80 (87.50%), Query Frame = 2
Query:    5 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            +KV D++ ADFGR EI+LAE EMPGLMA R ++G S+P KGA+I GSLHMTIQTAVLIETL ALGAEVRWCSCNI+STQD
Sbjct:   15 YKVADITLADFGRKEIDLAEKEMPGLMALREKYGESKPLKGARIMGSLHMTIQTAVLIETLVALGAEVRWCSCNIYSTQD 94          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_BACFR (Adenosylhomocysteinase OS=Bacteroides fragilis GN=ahcY PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.086e-29
Identity = 61/80 (76.25%), Postives = 70/80 (87.50%), Query Frame = 2
Query:    5 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            +KV D++ ADFGR EI+LAE EMPGLMA R ++G S+P KGA+I GSLHMTIQTAVLIETL ALGAEVRWCSCNI+STQD
Sbjct:   26 YKVADITLADFGRKEIDLAEKEMPGLMALREKYGESKPLKGARIMGSLHMTIQTAVLIETLVALGAEVRWCSCNIYSTQD 105          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_BRAJA (Adenosylhomocysteinase OS=Bradyrhizobium japonicum GN=ahcY PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.725e-29
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            ++ VKD+S ADFGR E+ LAE EMPGLMA R EFGP QP KGA+I GSLHMTIQT VLIETL ALGA++RW SCNI+STQD
Sbjct:    9 DYIVKDISLADFGRKELSLAETEMPGLMATREEFGPKQPLKGARIAGSLHMTIQTGVLIETLAALGADIRWVSCNIYSTQD 89          
The following BLAST results are available for this feature:
BLAST of FC878388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
SAHH_BRUA29.366e-3076.54Adenosylhomocysteinase OS=Brucella abortus (strain... [more]
SAHH_BRUA19.366e-3076.54Adenosylhomocysteinase OS=Brucella abortus (strain... [more]
SAHH_SPHAL1.223e-2976.54Adenosylhomocysteinase OS=Sphingopyxis alaskensis ... [more]
SAHH_RHOPT1.598e-2976.54Adenosylhomocysteinase OS=Rhodopseudomonas palustr... [more]
SAHH_RHOPA1.598e-2976.54Adenosylhomocysteinase OS=Rhodopseudomonas palustr... [more]
SAHH_NOVAD1.598e-2976.54Adenosylhomocysteinase OS=Novosphingobium aromatic... [more]
SAHH_RHOPS2.086e-2975.31Adenosylhomocysteinase OS=Rhodopseudomonas palustr... [more]
SAHH_BACTN2.086e-2976.25Adenosylhomocysteinase OS=Bacteroides thetaiotaomi... [more]
SAHH_BACFR2.086e-2976.25Adenosylhomocysteinase OS=Bacteroides fragilis GN=... [more]
SAHH_BRAJA2.725e-2974.07Adenosylhomocysteinase OS=Bradyrhizobium japonicum... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CB01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878388 ID=FC878388; Name=FC878388; organism=Citrus clementina; type=EST; length=246bp
TGAATTCAAGGTGAAGGATCTGTCCCAGGCTGACTTCGGCCGCCTCGAAA
TCGAGTTGGCCGAAGTCGAAATGCCGGGGCTCATGGCTTGCCGCGCCGAG
TTCGGCCCTTCACAGCCCTTCAAAGGAGCCAAGATCACCGGTTCACTCCA
CATGACCATCCAGACCGCCGTCCTCATCGAGACCCTCACCGCTCTCGGCG
CCGAAGTCCGCTGGTGCTCCTGCAACATCTTCTCAACCCAAGACCA
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