FC878388

Overview
NameFC878388
Unique NameFC878388
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length246
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10254 contig Ccv1_Contig10254:164..409. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_LEPBJ (Adenosylhomocysteinase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=ahcY PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.953e-27
Identity = 61/80 (76.25%), Postives = 67/80 (83.75%), Query Frame = 2
Query:    5 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            +KVKDLSQA++GR EI LAE EMPGLMA R E+   +P  GA+I GSLHMTIQTAVLIETLT LGAEVRW SCNIFSTQD
Sbjct:   12 YKVKDLSQAEWGRQEIILAEKEMPGLMALRQEYKGKKPLAGARIAGSLHMTIQTAVLIETLTELGAEVRWSSCNIFSTQD 91          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_COREF (Adenosylhomocysteinase OS=Corynebacterium efficiens GN=ahcY PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.953e-27
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            +FKV DLS A+ GR +I LAE EMPGLM  R E+   QP KGA+I GS+HMT+QTAVLIETLTALGAEVRW SCNIFSTQD
Sbjct:    6 DFKVADLSLAEAGRHQIRLAEYEMPGLMQLRREYAEEQPLKGARIAGSIHMTVQTAVLIETLTALGAEVRWASCNIFSTQD 86          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_MYCSS (Adenosylhomocysteinase OS=Mycobacterium sp. (strain MCS) GN=ahcY PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.551e-27
Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            ++KV DLS A+FGR EI LAE EMPGLMA R E+    P KGA+I+GSLHMT+QTAVLIETL +LGAEVRW SCNIFSTQD
Sbjct:   17 DYKVADLSLAEFGRKEIRLAEHEMPGLMALRREYAEVAPLKGARISGSLHMTVQTAVLIETLVSLGAEVRWASCNIFSTQD 97          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_MYCSK (Adenosylhomocysteinase OS=Mycobacterium sp. (strain KMS) GN=ahcY PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.551e-27
Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            ++KV DLS A+FGR EI LAE EMPGLMA R E+    P KGA+I+GSLHMT+QTAVLIETL +LGAEVRW SCNIFSTQD
Sbjct:   17 DYKVADLSLAEFGRKEIRLAEHEMPGLMALRREYAEVAPLKGARISGSLHMTVQTAVLIETLVSLGAEVRWASCNIFSTQD 97          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_MYCSJ (Adenosylhomocysteinase OS=Mycobacterium sp. (strain JLS) GN=ahcY PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.551e-27
Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            ++KV DLS A+FGR EI LAE EMPGLMA R E+    P KGA+I+GSLHMT+QTAVLIETL +LGAEVRW SCNIFSTQD
Sbjct:   17 DYKVADLSLAEFGRKEIRLAEHEMPGLMALRREYAEVAPLKGARISGSLHMTVQTAVLIETLVSLGAEVRWASCNIFSTQD 97          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_STRAA (Adenosylhomocysteinase OS=Streptomyces argillaceus GN=ahcY PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.331e-27
Identity = 58/80 (72.50%), Postives = 67/80 (83.75%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQ 241
            +FKV DLS A+FGR EI LAE EMPGLM+ R E+  +QP  GA++TGSLHMT+QTAVLIETL ALGA+VRW SCNIFSTQ
Sbjct:    7 DFKVADLSLAEFGRKEITLAEHEMPGLMSIRREYAEAQPLAGARVTGSLHMTVQTAVLIETLVALGAQVRWASCNIFSTQ 86          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_RALSO (Adenosylhomocysteinase OS=Ralstonia solanacearum GN=ahcY PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.331e-27
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            ++ V D+  AD+GR EI +AE EMPGLMA R EF  SQP KGA+I GSLHMTIQTAVLIETL ALGA+VRW SCNIFSTQD
Sbjct:   10 DYLVADIKLADWGRKEIAIAETEMPGLMAIRDEFAASQPLKGARIAGSLHMTIQTAVLIETLKALGADVRWASCNIFSTQD 90          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_RALPJ (Adenosylhomocysteinase OS=Ralstonia pickettii (strain 12J) GN=ahcY PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.331e-27
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            ++ V D+  AD+GR EI +AE EMPGLMA R EF  SQP KGA+I GSLHMTIQTAVLIETL ALGA+VRW SCNIFSTQD
Sbjct:   10 DYLVADIKLADWGRKEIAIAETEMPGLMAIRDEFAASQPLKGARIAGSLHMTIQTAVLIETLKALGADVRWASCNIFSTQD 90          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_MYXXD (Adenosylhomocysteinase OS=Myxococcus xanthus (strain DK 1622) GN=ahcY PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.331e-27
Identity = 57/81 (70.37%), Postives = 67/81 (82.72%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            ++ + DLS AD+GR EI +AE EMP LMA R E+  +QP KGA++TGSLHMTIQTAVL+ETL ALGAEVRW SCNIFSTQD
Sbjct:   11 DYAIADLSLADWGRKEIRIAESEMPALMAIREEYAKTQPLKGARVTGSLHMTIQTAVLVETLQALGAEVRWASCNIFSTQD 91          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_STRAZ (Adenosylhomocysteinase OS=Streptomyces atroolivaceus GN=ahcY PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.351e-27
Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            +FKV DLS A FGR EI LAE EMPGLM+ R E+  +QP  GA+ITGSLHMT+QTAVLIETL ALGA+VRW SCNI+STQD
Sbjct:   11 DFKVADLSLAAFGRKEITLAEHEMPGLMSIREEYAAAQPLAGARITGSLHMTVQTAVLIETLVALGADVRWVSCNIYSTQD 91          
The following BLAST results are available for this feature:
BLAST of FC878388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
SAHH_LEPBJ1.953e-2776.25Adenosylhomocysteinase OS=Leptospira borgpeterseni... [more]
SAHH_COREF1.953e-2772.84Adenosylhomocysteinase OS=Corynebacterium efficien... [more]
SAHH_MYCSS2.551e-2772.84Adenosylhomocysteinase OS=Mycobacterium sp. (strai... [more]
SAHH_MYCSK2.551e-2772.84Adenosylhomocysteinase OS=Mycobacterium sp. (strai... [more]
SAHH_MYCSJ2.551e-2772.84Adenosylhomocysteinase OS=Mycobacterium sp. (strai... [more]
SAHH_STRAA3.331e-2772.50Adenosylhomocysteinase OS=Streptomyces argillaceus... [more]
SAHH_RALSO3.331e-2772.84Adenosylhomocysteinase OS=Ralstonia solanacearum G... [more]
SAHH_RALPJ3.331e-2772.84Adenosylhomocysteinase OS=Ralstonia pickettii (str... [more]
SAHH_MYXXD3.331e-2770.37Adenosylhomocysteinase OS=Myxococcus xanthus (stra... [more]
SAHH_STRAZ4.351e-2772.84Adenosylhomocysteinase OS=Streptomyces atroolivace... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA15CB01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878388 ID=FC878388; Name=FC878388; organism=Citrus clementina; type=EST; length=246bp
TGAATTCAAGGTGAAGGATCTGTCCCAGGCTGACTTCGGCCGCCTCGAAA
TCGAGTTGGCCGAAGTCGAAATGCCGGGGCTCATGGCTTGCCGCGCCGAG
TTCGGCCCTTCACAGCCCTTCAAAGGAGCCAAGATCACCGGTTCACTCCA
CATGACCATCCAGACCGCCGTCCTCATCGAGACCCTCACCGCTCTCGGCG
CCGAAGTCCGCTGGTGCTCCTGCAACATCTTCTCAACCCAAGACCA
back to top