FC878388

Overview
NameFC878388
Unique NameFC878388
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length246
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10254 contig Ccv1_Contig10254:164..409. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_METCA (Adenosylhomocysteinase OS=Methylococcus capsulatus GN=ahcY PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.351e-27
Identity = 60/81 (74.07%), Postives = 66/81 (81.48%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            + KV DLS A +GR EI +AE EMPGLMA R E+  +QP KGA+I GSLHMTIQTAVLIETL ALGAEVRW SCNIFSTQD
Sbjct:   12 DHKVADLSLAGWGRKEIAIAETEMPGLMAIREEYRAAQPLKGARIAGSLHMTIQTAVLIETLVALGAEVRWASCNIFSTQD 92          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_LEPCP (Adenosylhomocysteinase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=ahcY PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.351e-27
Identity = 58/81 (71.60%), Postives = 66/81 (81.48%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            ++ V DLS A +GR EI +AE EMPGLMA R EF   QP KGA++TGSLHMTIQTAVL+ETL ALGA+VRW SCNIFSTQD
Sbjct:   12 DYLVADLSLAAWGRKEIRIAETEMPGLMAIREEFAAKQPLKGARVTGSLHMTIQTAVLVETLQALGAQVRWASCNIFSTQD 92          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_GRAFK (Adenosylhomocysteinase OS=Gramella forsetii (strain KT0803) GN=ahcY PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.351e-27
Identity = 58/80 (72.50%), Postives = 65/80 (81.25%), Query Frame = 2
Query:    5 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            +KVKD+  A++GR EIELAE EMPGLMA R E+G S+P KGA+I G LHMTIQTAVLIETL  LGA V W SCNIFSTQD
Sbjct:   11 YKVKDIELAEYGRREIELAEAEMPGLMALRKEYGASKPLKGARIAGCLHMTIQTAVLIETLVELGANVTWSSCNIFSTQD 90          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_FLAPJ (Adenosylhomocysteinase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=ahcY PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.351e-27
Identity = 61/80 (76.25%), Postives = 65/80 (81.25%), Query Frame = 2
Query:    5 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            FKVKD+S A +GR EIELAE EMPGLMA RAE+   QP  GA+I G LHMTIQTAVLIETL ALGAEV W SCNIFSTQD
Sbjct:   11 FKVKDISLAAWGRKEIELAEAEMPGLMALRAEYKNEQPLAGARIAGCLHMTIQTAVLIETLIALGAEVTWSSCNIFSTQD 90          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_DIAST (Adenosylhomocysteinase OS=Diaphorobacter sp. (strain TPSY) GN=ahcY PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.351e-27
Identity = 58/78 (74.36%), Postives = 65/78 (83.33%), Query Frame = 2
Query:   11 VKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            + D+S A++GR EI +AE EMPGLMA R EF   QP KGA+ITGSLHMTIQTAVLIETL ALGA+VRW SCNIFSTQD
Sbjct:   13 IADISLAEWGRKEIRIAETEMPGLMAIREEFAAKQPLKGARITGSLHMTIQTAVLIETLKALGADVRWASCNIFSTQD 90          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_CANAL (Adenosylhomocysteinase OS=Candida albicans GN=SAH1 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 4.351e-27
Identity = 59/80 (73.75%), Postives = 66/80 (82.50%), Query Frame = 2
Query:    5 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            +KV D+S A FGR +IEL+E EMPGLM  R ++GPSQP KGA+I G LHMTIQTAVLIETL ALGAEV W SCNIFSTQD
Sbjct:    9 YKVADISLAAFGRKDIELSENEMPGLMYIRKKYGPSQPLKGARIAGCLHMTIQTAVLIETLVALGAEVTWSSCNIFSTQD 88          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_BART1 (Adenosylhomocysteinase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=ahcY PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.351e-27
Identity = 56/81 (69.14%), Postives = 68/81 (83.95%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            +F VKD+  A +GR E+++AE EMPGLMACR EF  SQP +GA+I+GSLHMTIQTAVLIETL A+GA++RW S NIFSTQD
Sbjct:    5 DFVVKDIGLAAYGRKELDIAETEMPGLMACRKEFSSSQPLRGARISGSLHMTIQTAVLIETLKAIGADIRWSSSNIFSTQD 85          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_GRABC (Adenosylhomocysteinase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.682e-27
Identity = 58/81 (71.60%), Postives = 67/81 (82.72%), Query Frame = 2
Query:    2 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            ++KV+D+  AD+GR EI +AE EMPGLMA R E+G S+P  GA+I G LHMTIQTAVLIETLTALGA VRW SCNIFSTQD
Sbjct:   13 DYKVRDIGLADWGRKEIRMAEDEMPGLMALREEYGNSKPLAGARIAGCLHMTIQTAVLIETLTALGATVRWSSCNIFSTQD 93          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_DROME (Adenosylhomocysteinase OS=Drosophila melanogaster GN=Ahcy13 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 5.682e-27
Identity = 56/80 (70.00%), Postives = 68/80 (85.00%), Query Frame = 2
Query:    5 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            +KV D+S A++GR  I +AE EMPGLMACR ++GPS+P KGA+ITG LHMT+QTAVLIETL  LGA+V+W SCNIFSTQD
Sbjct:    6 YKVADISLAEWGRKAIIIAENEMPGLMACRKKYGPSKPLKGARITGCLHMTVQTAVLIETLVELGAQVQWSSCNIFSTQD 85          
BLAST of FC878388 vs. ExPASy Swiss-Prot
Match: SAHH_DICDI (Adenosylhomocysteinase OS=Dictyostelium discoideum GN=sahA PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 7.421e-27
Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = 2
Query:    5 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQD 244
            +KVKD+S A +GR EIE+AE EMPGLM  R ++GP+Q  KGA+I G LHMTIQTAVLIETLTALGA+V+W SCNIFSTQD
Sbjct:    6 YKVKDISLAAWGRKEIEIAENEMPGLMTLRKKYGPAQILKGARIAGCLHMTIQTAVLIETLTALGAQVQWSSCNIFSTQD 85          
The following BLAST results are available for this feature:
BLAST of FC878388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
SAHH_METCA4.351e-2774.07Adenosylhomocysteinase OS=Methylococcus capsulatus... [more]
SAHH_LEPCP4.351e-2771.60Adenosylhomocysteinase OS=Leptothrix cholodnii (st... [more]
SAHH_GRAFK4.351e-2772.50Adenosylhomocysteinase OS=Gramella forsetii (strai... [more]
SAHH_FLAPJ4.351e-2776.25Adenosylhomocysteinase OS=Flavobacterium psychroph... [more]
SAHH_DIAST4.351e-2774.36Adenosylhomocysteinase OS=Diaphorobacter sp. (stra... [more]
SAHH_CANAL4.351e-2773.75Adenosylhomocysteinase OS=Candida albicans GN=SAH1... [more]
SAHH_BART14.351e-2769.14Adenosylhomocysteinase OS=Bartonella tribocorum (s... [more]
SAHH_GRABC5.682e-2771.60Adenosylhomocysteinase OS=Granulibacter bethesdens... [more]
SAHH_DROME5.682e-2770.00Adenosylhomocysteinase OS=Drosophila melanogaster ... [more]
SAHH_DICDI7.421e-2772.50Adenosylhomocysteinase OS=Dictyostelium discoideum... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CB01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878388 ID=FC878388; Name=FC878388; organism=Citrus clementina; type=EST; length=246bp
TGAATTCAAGGTGAAGGATCTGTCCCAGGCTGACTTCGGCCGCCTCGAAA
TCGAGTTGGCCGAAGTCGAAATGCCGGGGCTCATGGCTTGCCGCGCCGAG
TTCGGCCCTTCACAGCCCTTCAAAGGAGCCAAGATCACCGGTTCACTCCA
CATGACCATCCAGACCGCCGTCCTCATCGAGACCCTCACCGCTCTCGGCG
CCGAAGTCCGCTGGTGCTCCTGCAACATCTTCTCAACCCAAGACCA
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