FC878390

Overview
NameFC878390
Unique NameFC878390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length956
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC878390 vs. ExPASy Swiss-Prot
Match: VA0D2_DROME (Probable V-type proton ATPase subunit d 2 OS=Drosophila melanogaster GN=CG4624 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 2.190e-56
Identity = 106/260 (40.77%), Postives = 166/260 (63.85%), Query Frame = 3 
Query:   36 AMTFNIHGGYLEAIVRGYRAGLLTAADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTL-KLVDEYKHMLCQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQV 812
            +M FN   GYLEA+ RG++ G+L  +DY NL QCE+L+D+ + +  T+YG     E S   +  ++E+C   +L+ +Y ++   +TEPL+TF+E+I Y  MIDNV L+V G  + R ++ LL  CHPLG FD +  + VA N  EL+  VL+DTP+A +    +  E L  +++EI+R  LY+AYLE FY +C +LGG TA +M++LL+FEADRR + I +N+IG+++   +R K++   G L       ++   D D++
Sbjct:    2 SMIFNTEYGYLEALTRGFKNGMLKHSDYLNLTQCESLEDVMISIQGTDYGLIFGGEQSA-PSVEVIERCLRDRLLQQYYYIRSHSTEPLTTFMEFIRYPFMIDNVALLVAGLNNHRSMKRLLRMCHPLGEFDQLGAIEVASNSAELFDAVLIDTPIARFVPRDLPMESLRYLDVEIVRAHLYRAYLEKFYAYCSQLGGNTANVMTNLLSFEADRRTITIAVNAIGSDIIPKERLKMFPTCGYLPKIALASMSTLNDTDKI 260
The following BLAST results are available for this feature:
BLAST of FC878390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
VA0D2_DROME2.190e-5640.77Probable V-type proton ATPase subunit d 2 OS=Droso... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA65DC12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA65DC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878390 ID=FC878390; Name=FC878390; organism=Citrus clementina; type=EST; length=956bp
CCGCTCTCTCATTCGCGAAGATGTACGGGTTCGAAGCGATGACGTTTAAC
ATACACGGCGGATACTTGGAGGCGATCGTGAGGGGCTACCGTGCGGGGCT
CTTGACGGCCGCCGATTACAACAATTTGTGCCAGTGCGAAACACTTGACG
ACATCAAGATGCACCTCTCCGCCACCGAATATGGTCCTTACCTCCAAAAC
GAACCTTCCCCATTGCATACTACAACAATTGTGGAGAAATGCACTCTGAA
ACTGGTTGATGAGTATAAGCACATGCTGTGCCAAGCCACTGAGCCCCTGT
CAACATTTTTAGAGTATATCACATATGGTCACATGATAGACAATGTTGTC
TTGATTGTTACTGGAACCTTGCATGAGAGAGATGTTCAAGAACTGTTGGA
GAAATGTCACCCTTTGGGCATGTTTGACAGCATTGCTACACTGGCGGTTG
CTCAGAACATGCGGGAGCTTTATAGATTGGTGCTTGTTGACACACCATTA
GCACCATACTTTTCTGAATGTATCACATCAGAGGACTTGGATGACATGAA
CATTGAAATAATGAGGAATACTCTCTACAAGGCATACCTAGAAGACTTTT
ACAAGTTTTGTCAGAAACTGGGTGGTGCAACAGCTGAGATCATGTCTGAC
CTTCTAGCTTTTGAGGCCGACAGAAGAGCTGTCAATATCACCATAAACAG
CATTGGCACTGAGCTCACCCGAGATGATCGTCGTAAATTGTACTCCAACT
TTGGTTTACTTTATCCCTATGGTCATGAGGAACTTGCTGTCTGTGAGGAT
ATAGATCAGGTTTGTTTTCAGTTTTAGTTTAGAGGNCACTGAAAAGAGCT
GCTTGTTTTTCTACTCTGGTGTGTTGGAGGGGCATCTGTTCTCTGGACAT
GATTAATGTTTAGCTGGTGGTTGCTAATGAAGTCCAGCATCTTTGGAAAA
AAAAAA
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