FC878391

Overview
NameFC878391
Unique NameFC878391
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length877
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4226 contig Ccv1_Contig4226:174..1050. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: GRWD1_HUMAN (Glutamate-rich WD repeat-containing protein 1 OS=Homo sapiens GN=GRWD1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.154e-15
Identity = 52/182 (28.57%), Postives = 82/182 (45.05%), Query Frame = 2
Query:  317 PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS----VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII----PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR--VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE 832
            PI S   H  E  + D++P      +T      + LWT     S     R F  H   V +  W+P  + VF S S D ++RIWD+R   S   +     AH+ ++    W++ +  L+ S   D ++KIWD+R ++   P+A    H   V  V++ P    + A+   D  +  WD  VE
Sbjct:  206 PIFSFAGHMGEGFALDWSPRVTGRLLTGDCQKNIHLWTPTDGGSWHVDQRPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACMLTTATAHDGDVNVISWSRREPFLL-SGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSVEWHPQDSGVFAASGADHQITQWDLAVE 386          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: GRWD1_MOUSE (Glutamate-rich WD repeat-containing protein 1 OS=Mus musculus GN=Grwd1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.799e-15
Identity = 52/182 (28.57%), Postives = 82/182 (45.05%), Query Frame = 2
Query:  317 PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS----VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMII---PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR--VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE 832
            PI S   H  E  + D++P      +T      V LWT     S     R F  H   V +  W+P    VF S S D ++RIWD+R   G   ++    AH+ ++    W++ +  L+ S   D ++K+WD+R ++   P+A    H   V  V++ P    + A+   D  +  WD  VE
Sbjct:  206 PIFSFAGHMGEGFALDWSPRVPGRLLTGDCQKNVHLWTPTEGGSWNVDQRPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTATAHDGDVNVISWSRREPFLL-SGGDDGALKVWDLRQFKSGSPVATFKQHMAPVTSVEWHPQDSGVFAASGADNQITQWDLAVE 386          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: WDS_DROME (Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.268e-15
Identity = 52/159 (32.70%), Postives = 85/159 (53.46%), Query Frame = 2
Query:  392 ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE 868
            ++ S D T+K+W +    S++T K H+  V+   +NP+ S++  S S D ++RIWDVR       +PAH   + A  +N+ D  LI S+S D   +IWD  + +    +++     V  VKFSP+ + +LA+ + D T+ LWD+     L     H  E
Sbjct:  130 VSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNE 285          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: SPG16_MOUSE (Sperm-associated antigen 16 protein OS=Mus musculus GN=Spag16 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.186e-15
Identity = 51/173 (29.48%), Postives = 87/173 (50.29%), Query Frame = 2
Query:  305 PTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 823
            P  N + +   HT  +    ++P+      TSS D T+KLW +++     T + H + V++ TW+    D   SAS D T +IWDV        +  H   + + ++  + + L+ +AS DK++ +WD R  +   + L GH ++V    F+P R +++ASC       LWDF
Sbjct:  390 PQGNVLLTGSGHTDWLSGCCFHPSG-SKLATSSGDSTIKLWDLNKGECTLTLEGHNHAVWSCTWHSC-GDFVASASLDMTSKIWDVNSERCRYTLYGHTDSVNSIEFFPFSNILL-TASADKTLSVWDARTGKCEQS-LYGHMHSVNDATFTP-RGHIIASCDARGVTKLWDF 557          

HSP 2 Score: 73.9442 bits (180), Expect = 1.307e-12
Identity = 47/160 (29.38%), Postives = 79/160 (49.38%), Query Frame = 2
Query:  380 RDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH 859
            RD  I+ S D   K+  + +   + T   H   +    ++P  S +  ++SGD T+++WD+ +   T+ +  H   + +C W+   D  +ASAS+D + KIWDV + R     L GH  +V  ++F P   N+L + S D T+ +WD          Y H
Sbjct:  372 RDYLISCSEDRLWKMVGLPQGNVLLTGSGHTDWLSGCCFHPSGSKL-ATSSGDSTIKLWDLNKGECTLTLEGHNHAVWSCTWHSCGD-FVASASLDMTSKIWDVNSERCRY-TLYGHTDSVNSIEFFPF-SNILLTASADKTLSVWDARTGKCEQSLYGH 527          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: WD51B_PONAB (WD repeat-containing protein 51B OS=Pongo abelii GN=WDR51B PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14
Identity = 56/173 (32.37%), Postives = 85/173 (49.13%), Query Frame = 2
Query:  308 TANPI--RSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 820
            T +P+  R    H   + S D +P  +    T+SWD  + LW          +  H   V +  ++P H ++  SAS D T+R+W   + G      AH   + + D++  D   +A+AS DKSIK+W +   R  +  L  H + VR  KFSP  R L+ SCS D T+ +WD
Sbjct:    5 TEDPVLERYFKGHKAAITSLDLSPNGKQ-LATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSP-HGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSA-DGQFLATASEDKSIKVWSMYRQRF-LYSLYRHTHWVRCAKFSPDGR-LIVSCSEDKTIKIWD 172          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: WD51B_HUMAN (WD repeat-containing protein 51B OS=Homo sapiens GN=WDR51B PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14
Identity = 56/173 (32.37%), Postives = 85/173 (49.13%), Query Frame = 2
Query:  308 TANPI--RSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 820
            T +P+  R    H   + S D +P  +    T+SWD  + LW          +  H   V +  ++P H ++  SAS D T+R+W   + G      AH   + + D++  D   +A+AS DKSIK+W +   R  +  L  H + VR  KFSP  R L+ SCS D T+ +WD
Sbjct:    5 TEDPVLERYFKGHKAAITSLDLSPNGKQ-LATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSP-HGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSA-DGQFLATASEDKSIKVWSMYRQRF-LYSLYRHTHWVRCAKFSPDGR-LIVSCSEDKTIKIWD 172          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: GRWD1_RAT (Glutamate-rich WD repeat-containing protein 1 OS=Rattus norvegicus GN=Grwd1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.069e-14
Identity = 51/182 (28.02%), Postives = 82/182 (45.05%), Query Frame = 2
Query:  317 PIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTS----VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMII---PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR--VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE 832
            PI S   H  E  + D++P      +T      + LWT     S     R F  H   V +  W+P    VF S S D ++RIWD+R   G   ++    AH+ ++    W++ +  L+ S   D ++K+WD+R ++   P+A    H   V  V++ P    + A+   D  +  WD  VE
Sbjct:  205 PIFSFAGHMGEGFALDWSPRVPGRLLTGDCQKNIHLWTPTDGGSWNVDQRPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTAAAHDGDVNVISWSRREPFLL-SGGDDGTLKVWDLRQFKSGSPVATFKQHVAPVTSVEWHPQDSGVFAASGADNQITQWDLAVE 385          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: WDR69_HUMAN (WD repeat-containing protein 69 OS=Homo sapiens GN=WDR69 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.396e-14
Identity = 53/192 (27.60%), Postives = 92/192 (47.92%), Query Frame = 2
Query:  245 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 820
            S  I    D + K++DTA   +   + +L  H   V++  +N    D   T S+D T KLW+V+      TF+ H   +   ++NP+ S +  + S D T ++WD++       +  H  EI++  +N   D +I + S D ++ +WD    R  + +L GH   +    F+    +L+ + S D T  LWD
Sbjct:  105 SCFITGSYDRTCKLWDTA---SGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQ-STLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRII-TGSFDHTVVVWDADTGR-KVNILIGHCAEISSASFN-WDCSLILTGSMDKTCKLWD 289          

HSP 2 Score: 73.1738 bits (178), Expect = 2.229e-12
Identity = 57/192 (29.69%), Postives = 90/192 (46.88%), Query Frame = 2
Query:  245 SLLIAAVADGSVKIYDTALPPTANPIRSLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 820
            +L+     D + K++D         + +L  H+ E+ S  +N T  D  IT S+D TV +W  D    V     H   + +A++N   S +  + S D T ++WD         +  H+ EIL   ++ Y   LIA+AS D + +I+     R  IA L GH   + K+ F+P   +LL   S D T  +WD
Sbjct:  190 TLVATGSMDTTAKLWDIQ---NGEEVYTLRGHSAEIISLSFN-TSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCS-LILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFD-YTGKLIATASADGTARIFSAAT-RKCIAKLEGHEGEISKISFNPQGNHLLTGSS-DKTARIWD 373          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: WDR5_RAT (WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.396e-14
Identity = 51/159 (32.08%), Postives = 85/159 (53.46%), Query Frame = 2
Query:  392 ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE 868
            +++S D T+K+W V     ++T K H+  V+   +NP+ S++  S S D ++RIWDV+       +PAH   + A  +N+ D  LI S+S D   +IWD  + +    +++     V  VKFSP+ + +LA+ + D T+ LWD+     L     H  E
Sbjct:  103 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNE 258          

HSP 2 Score: 74.7146 bits (182), Expect = 7.662e-13
Identity = 50/165 (30.30%), Postives = 80/165 (48.48%), Query Frame = 2
Query:  326 SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 820
            +L  HT+ V S  ++P   +   +SS D  +K+W        +T   H   + +  W+   S++  SAS D TL+IWDV        +  H   +  C++N   + LI S S D+S++IWDV+  +  +  L  H   V  V F+    +L+ S SYD    +WD
Sbjct:   40 TLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWD 199          
BLAST of FC878391 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.396e-14
Identity = 51/159 (32.08%), Postives = 85/159 (53.46%), Query Frame = 2
Query:  392 ITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE 868
            +++S D T+K+W V     ++T K H+  V+   +NP+ S++  S S D ++RIWDV+       +PAH   + A  +N+ D  LI S+S D   +IWD  + +    +++     V  VKFSP+ + +LA+ + D T+ LWD+     L     H  E
Sbjct:  103 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNE 258          

HSP 2 Score: 74.7146 bits (182), Expect = 7.662e-13
Identity = 50/165 (30.30%), Postives = 80/165 (48.48%), Query Frame = 2
Query:  326 SLHEHTREVHSADYNPTRRDSFITSSWDDTVKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 820
            +L  HT+ V S  ++P   +   +SS D  +K+W        +T   H   + +  W+   S++  SAS D TL+IWDV        +  H   +  C++N   + LI S S D+S++IWDV+  +  +  L  H   V  V F+    +L+ S SYD    +WD
Sbjct:   40 TLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWD 199          
The following BLAST results are available for this feature:
BLAST of FC878391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
GRWD1_HUMAN2.154e-1528.57Glutamate-rich WD repeat-containing protein 1 OS=H... [more]
GRWD1_MOUSE4.799e-1528.57Glutamate-rich WD repeat-containing protein 1 OS=M... [more]
WDS_DROME6.268e-1532.70Protein will die slowly OS=Drosophila melanogaster... [more]
SPG16_MOUSE8.186e-1529.48Sperm-associated antigen 16 protein OS=Mus musculu... [more]
WD51B_PONAB1.069e-1432.37WD repeat-containing protein 51B OS=Pongo abelii G... [more]
WD51B_HUMAN1.069e-1432.37WD repeat-containing protein 51B OS=Homo sapiens G... [more]
GRWD1_RAT1.069e-1428.02Glutamate-rich WD repeat-containing protein 1 OS=R... [more]
WDR69_HUMAN1.396e-1427.60WD repeat-containing protein 69 OS=Homo sapiens GN... [more]
WDR5_RAT1.396e-1432.08WD repeat-containing protein 5 OS=Rattus norvegicu... [more]
WDR5_MOUSE1.396e-1432.08WD repeat-containing protein 5 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DB01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878391 ID=FC878391; Name=FC878391; organism=Citrus clementina; type=EST; length=877bp
CCACCGGCGAATAACAACACCAAAGATGCCCGTCTTCAAAACCCCATTTA
ACGGCTACTCCGTCAAATTCTCTCCCTTCTACGAGTCCCGTCTCGCCGTT
GCCACCGCCCAAAACTTCGGAATCCTCGGTAATGGCCGCGTCCACGTCCT
CGACCTCTCCCCCGCCGCTCCCGCTCTCACCGAACTAGTCGCCTTCGACA
CTGCCGACGGTGTTTACGACCTCGCATGGTCCGAATCCCACGACTCCCTC
CTAATCGCCGCCGTCGCCGATGGATCCGTTAAAATCTACGACACGGCCCT
CCCGCCAACGGCCAATCCCATCCGCTCCCTCCACGAGCACACTCGCGAAG
TCCACTCGGCCGATTATAACCCCACTCGACGTGATTCTTTCATCACATCG
TCCTGGGATGACACGGTTAAACTCTGGACCGTTGACCGGCCTACCAGTGT
GCGAACATTTAAAGAACACGCGTATTGCGTGTACAACGCCACGTGGAACC
CGCGTCACAGCGACGTGTTCTGTTCCGCGAGTGGGGACTGCACTCTTCGA
ATTTGGGATGTGAGAGAGATGGGCAGCACGATGATAATTCCGGCCCACGA
GTTTGAAATTTTAGCTTGTGATTGGAACAAGTACGATGACTGTTTAATTG
CGAGTGCTTCAGTTGATAAGAGTATTAAAATTTGGGATGTGAGGAACTAT
AGAGTTCCAATTGCTGTATTAAATGGACATGGCTATGCCGTGAGGAAAGT
GAAATTTTCACCGCACAGGAGGAATTTGTTAGCGTCTTGTTCGTATGACA
TGACTGTGTGCTTATGGGATTTCATGGTGGAGGATGCTTTGGTTGGGAGG
TATGATCATCACACTGAGTTTGCCGTT
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