FC878395

Overview
NameFC878395
Unique NameFC878395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length830
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878395_ssr112 microsatellite FC878395_ssr112:112..126. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11731 contig Ccv1_Contig11731:77..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: WIPI4_RAT (WD repeat domain phosphoinositide-interacting protein 4 OS=Rattus norvegicus GN=Wdr45 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.512e-23
Identity = 62/161 (38.51%), Postives = 90/161 (55.90%), Query Frame = 3
Query:  291 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS-GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDD------HQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVD-LKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRI 749
            S+ +NQD  CF      G RIYN EP  E    D +  G   +VEML R N+LALVG G + ++    V+IWDD       + + + EF F   V +V++  D+IV+VL ++IYVYSF D  + L + +T  NP+GLC L       +L  PG + G +++
Sbjct:   11 SLHFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSVGLVEMLHRSNLLALVGGGSSPKFSEISVLIWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLRNRIYVYSFPDNPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQL 171          
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: ATG18_KLULA (Autophagy-related protein 18 OS=Kluyveromyces lactis GN=ATG18 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.512e-23
Identity = 54/143 (37.76%), Postives = 90/143 (62.94%), Query Frame = 3
Query:  294 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSSTSVLACP 722
            +++NQ+  C + GTS GF+I+NCEPF   ++ +   GG  IVEMLF  ++LA+VG GDN    P ++ + +  +   I E  F + + SVK+++ R+ V+L+ +IY+Y   +++LLH IET  N +G+  +S +S  + L  P
Sbjct:   10 INFNQNGSCISMGTSQGFKIFNCEPFGRFYQDE--EGGCGIVEMLFSTSLLAVVGMGDNPAMSPRRLRMLNTKRHSVICEVTFPTTILSVKMNKSRLAVLLQEQIYIYDISNMRLLHTIETSMNAQGIMSMSPNSENNYLVYP 150          
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: HSV2_SCHPO (SVP1-like protein 2 OS=Schizosaccharomyces pombe GN=hsv2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.579e-23
Identity = 58/179 (32.40%), Postives = 95/179 (53.07%), Query Frame = 3
Query:  291 SVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSF-VDLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRI-----EHFGLNMIKLINAHDSHIAC 809
            +VS NQD  C +     G++I+   P K   +R    GG  IV+MLFR N+L LVG G N +Y P K+I+WDD + R + E     +++ +      + +    K+++Y F  +LKL   ++T  NP+GLC +      + +  P  + GQ++I     +H   +   ++ AHDS I+C
Sbjct:    6 TVSLNQDASCMSVALDTGYKIFQINPLKLRAQRQFNDGGLSIVKMLFRSNVLLLVGGGGNPKYAPNKLIVWDDVKERPVKELELNFEIKGICFDGKLLAIATASKLFLYQFGNNLKLQRCLDT-QNPKGLCAMVTTVEKTAIVFPSRKVGQLQILFLFKDHMNTS---IVPAHDSEISC 180          
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: ATG18_ASHGO (Autophagy-related protein 18 OS=Ashbya gossypii GN=ATG18 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.399e-23
Identity = 56/143 (39.16%), Postives = 88/143 (61.54%), Query Frame = 3
Query:  294 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSSTSVLACP 722
            +++NQ   C + GTS G +I+NC+PF   +  +   GG  IVEMLF  ++LA+VG GDN    P ++ I +  +   I E  F + + +VK++R R+VV+L+ +IY+Y    ++LL+ IET +NPRGL  +S     + LA P
Sbjct:   12 INFNQTGTCISMGTSEGLKIFNCDPFGRFYSDE--DGGCGIVEMLFSTSLLAVVGIGDNPSMSPRRLRILNTKRHSVICEVTFPTTILAVKMNRSRLVVLLQEQIYIYDINSMRLLYTIETSSNPRGLISMSPSLENNYLAYP 152          
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: ATG18_ASPNC (Autophagy-related protein 18 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=atg18 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.863e-22
Identity = 70/198 (35.35%), Postives = 101/198 (51.01%), Query Frame = 3
Query:  294 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQR-----------------------GQVRI-EHFGLNMIKLINAHDSHIACFT 815
            V++NQDY   A  TS GFRI+  +PF +++  + K G   I+EMLF  +++AL+         P ++ I +  +   I E  F + V +VKL+R R+V+VLE +IY+Y    +KLL+ IET  NP  LC LS  S    LA P  Q+                       G+V I +   L  I +I AH S +AC T
Sbjct:    6 VTFNQDYSYLAVATSKGFRIFTTDPFAKSY--ETKEGNIAIIEMLFSTSLVALI-------LSPRRLQITNTKRQSTICELTFPTTVLAVKLNRKRLVIVLEDQIYLYDIQTMKLLYTIETSPNPNALCALSPSSDNCYLAYPLPQKAPPSTFQPPAHAPPGTTHVTPTSGEVLIFDTLKLEAINVIEAHRSPLACIT 194          
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: HSV2_DEBHA (SVP1-like protein 2 OS=Debaryomyces hansenii GN=HSV2 PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.351e-22
Identity = 71/216 (32.87%), Postives = 103/216 (47.69%), Query Frame = 3
Query:  276 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPF----KETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDL-KLLHQIETLANPRGLCCLSHHSSTSV----------------------------LACPGLQRGQVRIEHFG-----LNMIKLINAHDSHIAC 809
            E++++++++NQD GCFA G   GF +YN  P     K  F  +    G   + ML R N LALVG G N ++   K++IWDD + +      F S V +V LSR RI+VVL++++ VY F    K     ET+ N  GL  LS + + S+                            LA PG   GQ++I          N++ +I AH S I C
Sbjct:   15 ELQILNINFNQDQGCFAVGHEYGFLVYNTNPIDIRVKRNFNINGHGSGIAHITMLHRTNYLALVGGGKNPKFANNKLVIWDDLKRKNSLNLEFMSPVLNVLLSRIRIIVVLKNQVLVYGFSSPPKKFATYETIENEFGLADLSVNFTNSIGNNLSTSNSSISSLVSNQVSYDSNKYQTLAFPGRSIGQIQIVDVSPSGQEKNLVSIIKAHKSKIRC 230          
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: ATG18_ASPTN (Autophagy-related protein 18 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=atg18 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.295e-22
Identity = 69/198 (34.85%), Postives = 101/198 (51.01%), Query Frame = 3
Query:  294 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQR-----------------------GQVRI-EHFGLNMIKLINAHDSHIACFT 815
            V++NQDY   A  TS GFRI+  +PF +++  + K G   I+EMLF  +++AL+         P ++ I +  +   I E  F + V +VKL+R R+V+VLE +IY+Y    +KLL+ IET  NP  +C LS  S    LA P  Q+                       G+V I +   L  I +I AH S +AC T
Sbjct:    6 VTFNQDYSYLAVATSKGFRIFTTDPFAKSY--ETKEGNIAIIEMLFSTSLVALI-------LSPRRLQITNTKRQSTICELTFPTTVLAVKLNRKRLVIVLEDQIYLYDIQTMKLLYTIETSPNPNAICALSPSSDNCYLAYPLPQKAPPSSFNPPSHAPPGSTHVSPTTGEVLIFDALKLEAINVIEAHRSPLACIT 194          
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: ATG18_MAGGR (Autophagy-related protein 18 OS=Magnaporthe grisea GN=ATG18 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.083e-21
Identity = 58/143 (40.56%), Postives = 82/143 (57.34%), Query Frame = 3
Query:  294 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSSTSVLACP 722
            +++NQD+GC A GTS GFRIY+ EPF + F  +   G   I+EMLF  +++AL+         P  +II +  +   I E  F S V +V+L+R R+ VVLE +IY+Y   ++ LL  I T  NP  +C LS  S    LA P
Sbjct:    9 ITFNQDHGCLAVGTSRGFRIYHTEPFSKIFSSE--DGNVSIIEMLFSTSLVALI-------LSPRHLIIQNTKRGSVICELTFPSAVLAVRLNRKRLAVVLEDEIYLYDIANMSLLFTIATSPNPSAICALSPSSENCFLAYP 142          
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: ATG18_DICDI (Autophagy-related protein 18 OS=Dictyostelium discoideum GN=atg18 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.083e-21
Identity = 61/176 (34.66%), Postives = 107/176 (60.80%), Query Frame = 3
Query:  285 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQ-RGQVRI-EHFGLNMIKLINAHDSHIA 806
            ++ +++NQD+ C A GT  G++I+N +P+  T      +GG  +VEMLF  +++++VG+GD +     +++I +   +  I +  F + + SVK++R RIVV++E KI++Y   ++KLL   E  +NP+GLC LS  S+T+ +  P  Q  G + + +   L  + LI AH S I+
Sbjct:   11 ILFLNFNQDFSCIAVGTPEGYKIFNSDPY--TLYYSQSNGGAGLVEMLFSTSLVSIVGSGDGNT-SQRRLLINNIKNNIPICDLNFVTAILSVKMNRKRIVVIMETKIHIYDINNMKLLETREIASNPKGLCALS-PSNTNYIVYPASQNNGNILVMDVLTLETVNLIQAHKSQIS 182          
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: ATG18_NEOFI (Autophagy-related protein 18 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=atg18 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.848e-21
Identity = 68/198 (34.34%), Postives = 101/198 (51.01%), Query Frame = 3
Query:  294 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQR-----------------------GQVRI-EHFGLNMIKLINAHDSHIACFT 815
            V++NQDY   A  TS GFRI+  +PF +++  + K G   I+EMLF  +++AL+         P ++ I +  +   I E  F + V +VKL+R R+V+VLE +IY+Y    +KLL+ I+T  NP  +C LS  S    LA P  Q+                       G+V I +   L  I +I AH S +AC T
Sbjct:    6 VTFNQDYSYLAVATSKGFRIFTTDPFAKSY--ETKEGNIAIIEMLFSTSLVALI-------LSPRRLQITNTKRQSTICELTFPTTVLAVKLNRKRLVIVLEDQIYLYDIQTMKLLYTIQTSPNPNAICALSPSSDNCYLAYPLPQKAPPSSFNPPSHTPPGSTHVSPTSGEVLIFDTLKLEAINVIEAHRSPLACIT 194          
The following BLAST results are available for this feature:
BLAST of FC878395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
WIPI4_RAT1.512e-2338.51WD repeat domain phosphoinositide-interacting prot... [more]
ATG18_KLULA1.512e-2337.76Autophagy-related protein 18 OS=Kluyveromyces lact... [more]
HSV2_SCHPO2.579e-2332.40SVP1-like protein 2 OS=Schizosaccharomyces pombe G... [more]
ATG18_ASHGO4.399e-2339.16Autophagy-related protein 18 OS=Ashbya gossypii GN... [more]
ATG18_ASPNC4.863e-2235.35Autophagy-related protein 18 OS=Aspergillus niger ... [more]
HSV2_DEBHA6.351e-2232.87SVP1-like protein 2 OS=Debaryomyces hansenii GN=HS... [more]
ATG18_ASPTN8.295e-2234.85Autophagy-related protein 18 OS=Aspergillus terreu... [more]
ATG18_MAGGR1.083e-2140.56Autophagy-related protein 18 OS=Magnaporthe grisea... [more]
ATG18_DICDI1.083e-2134.66Autophagy-related protein 18 OS=Dictyostelium disc... [more]
ATG18_NEOFI1.848e-2134.34Autophagy-related protein 18 OS=Neosartorya fische... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DB02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878395 ID=FC878395; Name=FC878395; organism=Citrus clementina; type=EST; length=830bp
AAAGCGAAAGAGAAAATTTGATCTGATGATCATTAATTTGATTTCTCATA
TCACAGCATCAAGGGGGTGCCACTGAAATTATTCACAATCGAGAAGATTT
TCATCTTTGATTGCTGCTGCTGCTGCTGACCGTTTCTTCGTCCCACATGA
CTTCAACTGTTTCGACATCTCGAGAAATTCTTCCACCGGGCCCCTTTGGA
TCCCCCAATGCTGGCGCTTCGGCTTCGGCTTCGGCTTCATTTGGCCACCC
GCAAACGGCGTTCAGTGATGTTGATGAAATTGAGTTGATCTCTGTGTCTT
GGAACCAGGACTATGGTTGTTTTGCCGCTGGAACTAGTTGTGGGTTTCGA
ATTTATAATTGTGAGCCGTTTAAGGAAACTTTTAGACGTGATTTGAAAAG
TGGTGGGTTTAGGATTGTTGAGATGTTGTTTCGTTGTAATATATTGGCAC
TCGTTGGTGCTGGGGATAATTCTCAGTATCCTCCTACTAAAGTTATTATT
TGGGATGATCATCAGAGCAGGTGCATTGGTGAGTTTGCGTTTAGGTCTGA
TGTTCGCTCTGTGAAATTGAGTAGGGATCGAATTGTGGTTGTTCTTGAGC
ATAAGATATATGTTTATAGTTTTGTTGATCTCAAGTTGCTTCATCAGATT
GAGACTCTTGCGAATCCGAGGGGGCTTTGTTGTCTTTCTCATCATTCGAG
TACTTCTGTGTTGGCTTGCCCGGGTCTCCAACGTGGACAGGTTCGCATTG
AGCACTTTGGGCTCAATATGATAAAGCTAATAAATGCTCATGATTCTCAT
ATTGCGTGCTTTACCTCACATTGGATGGCC
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