FC878395

Overview
NameFC878395
Unique NameFC878395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length830
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878395_ssr112 microsatellite FC878395_ssr112:112..126. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11731 contig Ccv1_Contig11731:77..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: WIPI1_XENLA (WD repeat domain phosphoinositide-interacting protein 1 OS=Xenopus laevis GN=wipi1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.126e-13
Identity = 54/182 (29.67%), Postives = 95/182 (52.20%), Query Frame = 3
Query:  282 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFK--ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQ-IETLANPRGLCCLSHHSSTSVLACPG-LQRGQVRIEHFGLNMIK---LINAHDSHIA 806
            ++  +S+NQD    A G   G+++Y+    +  +      ++    IVE LF  +++ +V     S   P ++ +    +   I  + +  ++ S++L+R R++V LE  IY+++  D+KLL   ++T  NP GLC LS + S S LA PG    G+V +  +  N +K    I AHDS +A
Sbjct:   12 DICCLSYNQDCTSVAIGMRSGYKLYSLSNVERLDLVHESCEAKDVYIVERLFSSSLVVVV-----SHAKPRQMNVLHFKKGTEICNYNYSDNILSIRLNRQRLIVCLEESIYIHNIKDMKLLKTLLDTPRNPHGLCTLSINHSNSYLAYPGSSSTGEVSL--YDANCLKCECTIPAHDSPLA 186          
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: WIPI2_HUMAN (WD repeat domain phosphoinositide-interacting protein 2 OS=Homo sapiens GN=WIPI2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.048e-12
Identity = 47/134 (35.07%), Postives = 77/134 (57.46%), Query Frame = 3
Query:  414 IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQI-ETLANPRGLCCLSHHSSTSVLACPGLQR-GQVRI-EHFGLNMIKLINAHDSHIA 806
            IVE LF  +++A+V     S   P K+ +    +   I  +++ + + +VKL+R R++V LE  +Y+++  D+K+LH I ET  NP GLC LS ++    LA PG    G+V++ +   L    +I AHDS +A
Sbjct:   78 IVERLFSSSLVAIV-----SLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMIPAHDSPLA 206          
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: ATG18_AJECN (Autophagy-related protein 18 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=ATG18 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.048e-12
Identity = 54/171 (31.58%), Postives = 82/171 (47.95%), Query Frame = 3
Query:  378 TFRRD---LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQR-----------------------GQVRI-EHFGLNMIKLINAHDSHIAC 809
            TF +D   L  G   I+EMLF  +++AL+         P ++ I +  +   I E  F + V +V+L+R R+V+VLE +IY+Y    +KLL+ IET  NP  +C LS  S    LA P  Q+                       G+V I +   L  I ++ AH S ++C
Sbjct:    7 TFNQDYSYLAVGNIAILEMLFSTSLVALI-------LSPRRLQITNTKRQSTICELTFPTTVLAVRLNRKRLVIVLEDQIYLYDIQTMKLLYTIETSPNPNAICALSPSSENCYLAYPLPQKAPPSSFTPPSHAPPSSAHISPTSGEVLIFDTLKLEAINVVEAHKSPLSC 170          
BLAST of FC878395 vs. ExPASy Swiss-Prot
Match: HSV2_CANAL (SVP1-like protein 2 OS=Candida albicans GN=HSV2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.782e-12
Identity = 50/141 (35.46%), Postives = 69/141 (48.94%), Query Frame = 3
Query:  303 NQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSG-----GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSF-VDLKLLHQIETLANPRGLCCLSHHSSTS 707
            N   G   + +S G        +K T +    SG     G   + ML R N LAL+G G+N ++P  K+IIWDD + +      F + V +V LSR RI+VVL  +I VY F    K      T+ NP G+  LS +S  S
Sbjct:   96 NNSTGSNGSVSSSGSNNETTLGYKSTHKSASGSGSGSGSGIGHISMLHRTNYLALIGGGENPKFPINKLIIWDDLKRKTSLSLEFDTPVLNVLLSRVRIIVVLIDQIIVYGFAAPPKKFQTFNTINNPLGIADLSVNSQQS 236          
The following BLAST results are available for this feature:
BLAST of FC878395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
WIPI1_XENLA4.126e-1329.67WD repeat domain phosphoinositide-interacting prot... [more]
WIPI2_HUMAN2.048e-1235.07WD repeat domain phosphoinositide-interacting prot... [more]
ATG18_AJECN2.048e-1231.58Autophagy-related protein 18 OS=Ajellomyces capsul... [more]
HSV2_CANAL7.782e-1235.46SVP1-like protein 2 OS=Candida albicans GN=HSV2 PE... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DB02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878395 ID=FC878395; Name=FC878395; organism=Citrus clementina; type=EST; length=830bp
AAAGCGAAAGAGAAAATTTGATCTGATGATCATTAATTTGATTTCTCATA
TCACAGCATCAAGGGGGTGCCACTGAAATTATTCACAATCGAGAAGATTT
TCATCTTTGATTGCTGCTGCTGCTGCTGACCGTTTCTTCGTCCCACATGA
CTTCAACTGTTTCGACATCTCGAGAAATTCTTCCACCGGGCCCCTTTGGA
TCCCCCAATGCTGGCGCTTCGGCTTCGGCTTCGGCTTCATTTGGCCACCC
GCAAACGGCGTTCAGTGATGTTGATGAAATTGAGTTGATCTCTGTGTCTT
GGAACCAGGACTATGGTTGTTTTGCCGCTGGAACTAGTTGTGGGTTTCGA
ATTTATAATTGTGAGCCGTTTAAGGAAACTTTTAGACGTGATTTGAAAAG
TGGTGGGTTTAGGATTGTTGAGATGTTGTTTCGTTGTAATATATTGGCAC
TCGTTGGTGCTGGGGATAATTCTCAGTATCCTCCTACTAAAGTTATTATT
TGGGATGATCATCAGAGCAGGTGCATTGGTGAGTTTGCGTTTAGGTCTGA
TGTTCGCTCTGTGAAATTGAGTAGGGATCGAATTGTGGTTGTTCTTGAGC
ATAAGATATATGTTTATAGTTTTGTTGATCTCAAGTTGCTTCATCAGATT
GAGACTCTTGCGAATCCGAGGGGGCTTTGTTGTCTTTCTCATCATTCGAG
TACTTCTGTGTTGGCTTGCCCGGGTCTCCAACGTGGACAGGTTCGCATTG
AGCACTTTGGGCTCAATATGATAAAGCTAATAAATGCTCATGATTCTCAT
ATTGCGTGCTTTACCTCACATTGGATGGCC
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