FC878396

Overview
NameFC878396
Unique NameFC878396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length872
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC878396 vs. ExPASy Swiss-Prot
Match: THRC_BACSL (Threonine synthase OS=Bacillus sp. (strain ULM1) GN=thrC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.429e-11
Identity = 47/124 (37.90%), Postives = 70/124 (56.45%), Query Frame = 1 
Query:  496 LPEIDPDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISIAQLVQPIANGAFVLSID 867
            LP  +    VS  EGN+ L       KQ LG+  L+ K+ G + TGSFKD GM + V++       +     + CASTG+TSA+ +AY A  G+  I+ +P  KI+  +L Q +A GA ++SI+
Sbjct:   13 LPVNEKTPDVSLMEGNTPLIPLLNISKQ-LGVQ-LYGKYEGANPTGSFKDRGMVMAVAKAK-----EEGSEAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIE 129
The following BLAST results are available for this feature:
BLAST of FC878396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
THRC_BACSL1.429e-1137.90Threonine synthase OS=Bacillus sp. (strain ULM1) G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CB03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878396 ID=FC878396; Name=FC878396; organism=Citrus clementina; type=EST; length=872bp
CACAAAGATACCCAAAACGACAGCCGCTGTGAGCATTTATCGAACATGGC
ATCTTGCTCACTGTTTCACCCCCAAACCAAAATCAAACCGTTCAATCAAA
ACCACCCTCGCCTCACATACCATCCGCCCACCGTTATCTCTTGCAGCTTC
TCCACATCCAATCCCTCCTCTCCTCCTCCACCAGCAGCGGCTTCAAAAAA
TCGCCGCGCAGCCGATGAGAACATTCGTGACGAAGCTCGACGACAACGTT
CCACTACAAATAACACTTTTTCCGCGAAGTACGTACCCTTCAATGCGGGT
CCTGATTCACCCGAGTTCTACTCGCTCGACGAGATTGTCTACCGGAGCCG
CTCCGGCGGCCTTCTCGACGTTCAGCACGACATGGAGTCGTTGAAGAAAT
TCGACGGCGCCTACTGGAGAGACCTCTTCGACTCTCGCGTGGGTAAGACC
ACTTGGCCTTATGGTTCCGGAGTGTGGAGCAAAAAGGAGTGGGTCCTACC
TGAGATCGATCCCGACGACATTGTTTCGGCCTTTGAAGGGAACTCCAACT
TGTTCTGGGCGGAGCGTTTTGGCAAACAGTTCCTGGGCATGAATGATTTG
TGGGTTAAACACTGCGGTATTAGCCACACTGGGAGTTTCAAAGACTTGGG
CATGACCGTTTTGGTCAGCCAAGTCAACAGACTTCGTAAAATGAAACGAC
CCGTCGTCGGAGTCGGCTGTGCATCCACCGGTGACACATCAGCTGCTCTA
TCTGCTTATTGTGCCTCAGCAGGTATTCCTTCCATTGTGTTTTTACCTGC
CAATAAGATTTCAATAGCTCAATTGGTGCAGCCAATTGCCAATGGGGCTT
TTGTTTTGAGTATTGATACTGA
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