FC878400

Overview
NameFC878400
Unique NameFC878400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length885
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878400_ssr61 microsatellite FC878400_ssr61:61..72. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11040 contig Ccv1_Contig11040:201..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878400 vs. ExPASy Swiss-Prot
Match: PMO25_SCHPO (Mo25-like protein OS=Schizosaccharomyces pombe GN=pmo25 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.181e-31
Identity = 77/228 (33.77%), Postives = 134/228 (58.77%), Query Frame = 1
Query:  202 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFFAEYNSKLLESSHYITR 885
            M  LF  +P++  D+VR   D +     + D ++S       E+ K ++ L+  L G +E EP ++  + L+ + ++ N   LL+  LPKL  E++KD   + + L R+ V S+    DY+ A+  +  +L++ Y   ++A   G++LREC RH+++   +L S+    FF  IQ  +FD+A+DA +TFK +L  HKS VAEF+S +++ FF +Y + LL+S +Y+T+
Sbjct:    1 MSFLFNKRPKSTQDVVRCLCDNLPKLEINNDKKKS-----FEEVSKCLQNLRVSLCGTAEVEPDADLVSDLSFQIYQSNLPFLLVRYLPKLEFESKKDTGLIFSALLRRHVASRYPTVDYMLAHPQIFPVLVSYYRYQEVAFTAGSILRECSRHEALNEVLLNSRDFWTFFSLIQASSFDMASDAFSTFKSILLNHKSQVAEFISYHFDEFFKQY-TVLLKSENYVTK 222          
BLAST of FC878400 vs. ExPASy Swiss-Prot
Match: DEE76_CHLPR (Degreening-related gene dee76 protein OS=Chlorella protothecoides GN=DEE76 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.181e-31
Identity = 74/196 (37.76%), Postives = 117/196 (59.69%), Query Frame = 1
Query:  301 ESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSK-LIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFFAEYNSKLLESSHYITR 885
            ESK++  + ++ K I  +K  ++G  E     E    + +E  R   +  L+T L  L+ E RKD  Q+   + R  +        DY+ A+ D+L  L  GYE+ ++AL+ G M RECIRH+ +A++VLE    ++ F+ + + +F++A+DA ATFK+LLTRHK  VA FL +NY  FF++ + KLL S +Y+TR
Sbjct:   19 ESKQDRVVEDISKAIMSIKEAIFGEDEQSSSKEHAQGIASEACRVGLVSDLVTYLTVLDFETRKDVVQIFCAIIRITLEDGGRPGRDYVLAHPDVLSTLFYGYEDPEIALNCGQMFRECIRHEDIAKFVLECNLFEELFEKLNVQSFEVASDAFATFKDLLTRHKQLVAAFLQENYEDFFSQLD-KLLTSDNYVTR 213          
BLAST of FC878400 vs. ExPASy Swiss-Prot
Match: HYMA_EMENI (Conidiophore development protein hymA OS=Emericella nidulans GN=hymA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.360e-23
Identity = 71/251 (28.29%), Postives = 124/251 (49.40%), Query Frame = 1
Query:  217 KSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQR-QQVHSKL----IASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMK-----------------------KFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYNWFFAEYNSKLLESSHYITR 885
            + + R P D+VR  +DL++     +    SK ED   EL K + ++K ++ G  E E  ++    L      E+ L  L   L  L  EARKD   + +++ R +  H       + S  +    +++  L  GYE++  A+  G +LRE ++   +A  +L  Q  +                       +FF +I    F+++ADA  TF+E+LTRHKS V  +L+ N+++FFA++N+ L++S  Y+T+
Sbjct:    7 RGRSRQPSDVVRSIKDLLLRLREPSTA--SKVED---ELAKQLSQMKLMVQGTQELEASTDQVHALVQAMLHEDLLYELAVALHNLPFEARKDTQTIFSHILRFKPPHGNSPDPPVISYIVHNRPEIIIELCRGYEHSQSAMPCGTILREALKFDVIAAIILYDQSKEGEPAIRLTEVQPNVPQRGTGVFWRFFHWIDRGTFELSADAFTTFREILTRHKSLVTGYLATNFDYFFAQFNTFLVQSESYVTK 252          
BLAST of FC878400 vs. ExPASy Swiss-Prot
Match: HYM1_YEAST (Protein HYM1 OS=Saccharomyces cerevisiae GN=HYM1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.048e-14
Identity = 57/234 (24.36%), Postives = 108/234 (46.15%), Query Frame = 1
Query:  214 FKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELC-KNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENT-------DMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVA-EFLSKNYNWF-FAEYNSKLLESSHYITR 885
            +K  P+TP D  R   + +   +  +  +++KR  K+ E C K +   K  + G+++  P  EA  +L     R +    L+     L  EAR++   + +        +K +  DYL +    + +++   E         D+ L  G M+ ECI+++ + R +L+   + KFF++ +L NF+I+ ++        T H   V+ EF S   N   F +  +KL+    Y+T+
Sbjct:   16 WKKNPKTPSDYARLIIEQLNKFSSPSLTQDNKR--KVQEECTKYLIGTKHFIVGDTDPHPTPEAIDELYTAMHRADVFYELLLHFVDLEFEARRECMLIFSICLGYSKDNKFVTVDYLVSQPKTISLMLRTAEVALQQKGCQDIFLTVGNMIIECIKYEQLCRIILKDPQLWKFFEFAKLGNFEISTESLQILSAAFTAHPKLVSKEFFSNEINIIRFIKCINKLMAHGSYVTK 247          
The following BLAST results are available for this feature:
BLAST of FC878400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PMO25_SCHPO2.181e-3133.77Mo25-like protein OS=Schizosaccharomyces pombe GN=... [more]
DEE76_CHLPR2.181e-3137.76Degreening-related gene dee76 protein OS=Chlorella... [more]
HYMA_EMENI6.360e-2328.29Conidiophore development protein hymA OS=Emericell... [more]
HYM1_YEAST7.048e-1424.36Protein HYM1 OS=Saccharomyces cerevisiae GN=HYM1 P... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DB03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878400 ID=FC878400; Name=FC878400; organism=Citrus clementina; type=EST; length=885bp
CTGTAACAACAACTCAGACAGCAAAATTAAATTCGAAAGCTGAAACCCTA
AAGCCTAATTAGAAGAAGAAGATACACAATAGGAATCTGTGCGTCAAAGC
CGAAAGCTGAGGCGCTCTCAGCCTCGGCGAGTCAATCGGTCCAGCGCCTC
TCGAGCTCAGCCAGTTCAAGTTCGATTAACGAATTAGACCCTAACACAAA
AATGAAGGGACTTTTCAAATCCAAGCCTCGTACTCCCGTCGACATCGTCC
GCCAAACTCGGGATCTTATTATTTACGCCAATCGCAGCGCAGATGTTCGT
GAATCGAAGCGCGAAGACAAGATGGCAGAGTTATGTAAAAACATCAGGGA
GTTAAAGTCAATACTTTATGGCAATAGTGAATCTGAGCCAGTTTCAGAGG
CATGTGCACAATTGACTGCAGAGTTCTTCAGGGAAAACACGTTACGGCTT
TTGATAACTTGTCTTCCAAAGTTGAACTTGGAGGCAAGGAAAGATGCCAC
TCAGGTTGTTGCTAATTTACAGAGGCAACAAGTTCACTCAAAGTTGATTG
CCTCTGACTACTTAGAAGCAAACATAGATCTTTTGGATATTCTGATAGCT
GGTTATGAAAACACAGACATGGCTTTACATTATGGTGCTATGCTTAGGGA
GTGTATTCGTCATCAGAGTGTTGCAAGATATGTGTTGGAATCCCAGCACA
TGAAGAAGTTTTTTGACTATATACAGCTTCCAAATTTTGACATTGCTGCA
GATGCTGCTGCAACTTTTAAGGAACTGTTGACAAGGCACAAATCCACTGT
GGCCGAATTTCTTTCTAAGAATTATAACTGGTTTTTTGCAGAATATAACT
CAAAACTGTTGGAATCTTCTCATTACATTACCAGA
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