FC878402

Overview
NameFC878402
Unique NameFC878402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length891
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878402 vs. ExPASy Swiss-Prot
Match: PME32_ARATH (Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.389e-38
Identity = 95/252 (37.70%), Postives = 128/252 (50.79%), Query Frame = 2
Query:  167 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCK-----SQGFITAQSRKSSQETTGYVFLRCVITG------NGGTGYMYLGRPWGPFGRVVFAFTYMDQCIRHVXWHNW 889
            VA DGTG++ T+ +A+   P  +T R +I +  GVY + V + K K  I + G   + TV+T N +           + G  TF   +  V G  F+A +ITF+N+A     QAVAIR   D   FY C   G+QDTLY H  +Q+ ++C I G+VDFIFG++TA+ + C I  K      +  ITAQ RK   E TG+      I        N  T   YLGRPW  + R VF   YM   I  V W  W
Sbjct:  217 VAADGTGNFTTISDAVLAAPDYSTKRYVIHVKRGVYVENVEIKKKKWNIMMVGDGIDATVITGNRSF----------IDGWTTFRSATFAVSGRGFIARDITFQNTAGPEKHQAVAIRSDTDLGVFYRCAMRGYQDTLYAHSMRQFFRECIITGTVDFIFGDATAVFQSCQIKAKQGLPNQKNSITAQGRKDPNEPTGFTIQFSNIAADTDLLLNLNTTATYLGRPWKLYSRTVFMQNYMSDAINPVGWLEW 458          
BLAST of FC878402 vs. ExPASy Swiss-Prot
Match: PME13_ARATH (Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.389e-38
Identity = 89/253 (35.18%), Postives = 138/253 (54.55%), Query Frame = 2
Query:  164 TVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCK-----SQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYM------YLGRPWGPFGRVVFAFTYMDQCIRHVXWHNW 889
            TVA+DG+G + T+ +A+  +P     R +I +  G+Y + V V K K  +T+ G   + T++T N +     H +  R   T TF     + +GE F+A+++ F N+A     QAVAIRV +DR  F NCRF G+QDTLY +  +QY + C I G++DFIFG++ A+ ++C+I  +      +  +TAQ R    +TTG+V   C I  N     +      YLGRPW  + R +   + ++  I  V W  W
Sbjct:  303 TVAKDGSGDFTTINDALRAMPEKYEGRYIIYVKQGIYDEYVTVDKKKANLTMVGDGSQKTIVTGNKS-----HAKKIRTFLTATF-----VAQGEGFMAQSMGFRNTAGSEGHQAVAIRVQSDRSIFLNCRFEGYQDTLYAYTHRQYYRSCVIVGTIDFIFGDAAAIFQNCNIFIRKGLPGQKNTVTAQGRVDKFQTTGFVVHNCKIAANEDLKPVKEEYKSYLGRPWKNYSRTIIMESKIENVIDPVGWLRW 545          
BLAST of FC878402 vs. ExPASy Swiss-Prot
Match: PME56_ARATH (Probable pectinesterase 56 OS=Arabidopsis thaliana GN=PME56 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.192e-38
Identity = 87/249 (34.94%), Postives = 135/249 (54.22%), Query Frame = 2
Query:  167 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQG-----FITAQSRKSSQETTGYVFLRCVITGNG------GTGYMYLGRPWGPFGRVVFAFTYMDQCIRHVXW 880
            VA+DG+G++ TV EA+   P       +I I  G+Y++ + + K K  +TL G   + TVL+ +             V G  TF   ++ V+   F+A+++   N+A     QAVA+R++ D    Y CR   +QDTLY + G+Q+ +DCYI G+VDFIFG + A+ ++C I  +  G      +TAQSR+    T+G+ F +C I+ +       GT   +LGRPW  F RVVF  +++D  I    W
Sbjct:   48 VAKDGSGNFTTVNEAVAAAPENGVKPFVIYIKEGLYKEVIRIGKKKTNLTLVGDGRDLTVLSGDLNG----------VDGIKTFDSATLAVDESGFMAQDLCIRNTAGPEKRQAVALRISTDMTIIYRCRIDAYQDTLYAYSGRQFYRDCYITGTVDFIFGRAAAVFQYCQIEARKPGIGQTNILTAQSREEDTATSGFSFQKCNISASSDLTPIKGTVKTFLGRPWRAFSRVVFMESFIDDVIDRAGW 286          
BLAST of FC878402 vs. ExPASy Swiss-Prot
Match: PME18_ARATH (Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 3.493e-37
Identity = 86/254 (33.86%), Postives = 135/254 (53.15%), Query Frame = 2
Query:  161 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQG-----FITAQSRKSSQETTGYVFLRCVITGNG------GTGYMYLGRPWGPFGRVVFAFTYMDQCIRHVXWHNW 889
            V VA+DGTG ++TV EA+   P  +  R +I +  GVY++ + + K K  + L G   + T++T +             + G+ TF   +V   G+ F+A++I F+N+A     QAVA+RV+AD+     CR   +QDTLY H  +Q+ +D YI G+VDFIFGNS  + ++C I  ++ G      +TAQ R+   + T     +C IT +       G+   +LGRPW  + R V   +++D  I    W  W
Sbjct:  247 VVVAKDGTGKFKTVNEAVAAAPENSNTRYVIYVKKGVYKETIDIGKKKKNLMLVGDGKDATIITGSLNV----------IDGSTTFRSATVAANGDGFMAQDIWFQNTAGPAKHQAVALRVSADQTVINRCRIDAYQDTLYTHTLRQFYRDSYITGTVDFIFGNSAVVFQNCDIVARNPGAGQKNMLTAQGREDQNQNTAISIQKCKITASSDLAPVKGSVKTFLGRPWKLYSRTVIMQSFIDNHIDPAGWFPW 490          
BLAST of FC878402 vs. ExPASy Swiss-Prot
Match: PME41_ARATH (Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 1.016e-36
Identity = 90/262 (34.35%), Postives = 133/262 (50.76%), Query Frame = 2
Query:  146 MASCVVTVAQDGTGHYRTVQEAIDRVPLCNTCRT---LIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQ-----GFITAQSRKSSQETTGYVFLRCVI------TGNGGTGYMYLGRPWGPFGRVVFAFTYMDQCIRHVXWHNW 889
            + S +VTV Q+GTG++ T+ EA++  P          +I ++ GVY + V + K K  + + G     TV+T N             V G  TF   +  V   +FVA N+TF N+A     QAVA+R +AD   FY+C F  +QDTLY H  +Q+ ++C I G+VDFIFGN+  + + C+++ +         ITAQ R    + TG     C I        +  T   YLGRPW  + R VF  +Y+D+ +  V W  W
Sbjct:  254 LVSDIVTVNQNGTGNFTTITEAVNSAPNKTDGTAGYFVIYVTSGVYEENVVIAKNKRYLMMIGDGINRTVVTGNRNV----------VDGWTTFNSATFAVTSPNFVAVNMTFRNTAGPEKHQAVAMRSSADLSIFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQDCNLYPRQPMQNQFNAITAQGRTDPNQNTGISIHNCTIKPADDLVSSNYTVKTYLGRPWKEYSRTVFMQSYIDEVVEPVGWREW 505          
BLAST of FC878402 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.957e-36
Identity = 98/265 (36.98%), Postives = 137/265 (51.70%), Query Frame = 2
Query:  161 VTVAQDGTGHYRTVQEAIDRVPLCNTCRT-LIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHI---------HCKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYM------------YLGRPWGPFGRVVFAFTYMDQCIRHVXWHNW 889
            VTV +DG   Y+TVQ+A++  P  N  R  +I+IS GVY + V VP  K  +   G     TV+T +  A          + G  T+   +V V G+ F+A ++TF+N+A   + QAVA R  +D     NC FLG QDTLY H  +Q+ K+C I+G+VDFIFGNS A+ + C I             +  +TAQ R    ++TG+VFL C+I  NG   YM            +LGRPW  + R VF    ++  I    W  W
Sbjct:  241 VTVCKDGKCGYKTVQDAVNAAPEDNGMRKFVIKISEGVYEENVIVPFEKKNVVFIGDGMGKTVITGSLNAG---------MPGITTYNTATVGVVGDGFMARDLTFQNTAGPDAHQAVAFRSDSDFSLIENCEFLGNQDTLYAHGLRQFYKNCRIQGNVDFIFGNSAAVFQDCEILIAPRQINPEKGEKNAVTAQGRIDPSQSTGFVFLNCLI--NGTEEYMKLFKANPKVHKNFLGRPWKDYSRTVFIGCNLEALITPDGWLPW 494          
BLAST of FC878402 vs. ExPASy Swiss-Prot
Match: PME_MEDSA (Pectinesterase/pectinesterase inhibitor OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.862e-36
Identity = 85/240 (35.42%), Postives = 129/240 (53.75%), Query Frame = 2
Query:  167 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCK-----SQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYM-----YLGRPWGPFGRVVFAFTYMD 856
            VAQDG+G ++T+ +A+  VP  N    +I +  GVY++ V V K  N +T+ G  P  T  T +     + +        T TFG     V G +F+A++I FEN+A  G  QAVA+RVTAD+  FYNC+  G+QDTLY+   +Q+ +DC I G++DF+FG    + ++C + C+      Q  +TA  R+     +  VF     TG      +     YLGRPW  + +VV   + +D
Sbjct:  134 VAQDGSGQFKTLTDALKTVPPKNAVPFVIHVKAGVYKETVNVAKEMNYVTVIGDGPTKTKFTGS-----LNYADGINTYNTATFG-----VNGANFMAKDIGFENTAGTGKHQAVALRVTADQAIFYNCQMDGFQDTLYVQSQRQFYRDCSISGTIDFVFGERFGVFQNCKLVCRLPAKGQQCLVTAGGREKQNSASALVFQSSHFTGEPALTSVTPKVSYLGRPWKQYSKVVIMDSTID 363          
BLAST of FC878402 vs. ExPASy Swiss-Prot
Match: PME42_ARATH (Probable pectinesterase/pectinesterase inhibitor 42 OS=Arabidopsis thaliana GN=PME42 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.862e-36
Identity = 87/252 (34.52%), Postives = 129/252 (51.19%), Query Frame = 2
Query:  161 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCK-----SQGFITAQSRKSSQETTGYVFLRCVITGNG----GTGYMYLGRPWGPFGRVVFAFTYMDQCIRHVXWHNW 889
            V VA+DGTG Y TV  AI   P  +  R +I I  G+Y + V +  TK  +TL G   ++T++T N +A+ +      R   T TF        G+ F+  ++ F N+     G AVA+RV+ D    Y CR  G+QD LY H  +Q+ ++C+I G+VDFI GN+ A+ + C I  +        FITAQSR++  + +G+    C IT +      T   YLGRPW  F  V    +++   +    W  W
Sbjct:  216 VVVAKDGTGKYNTVNAAIAAAPQHSHKRFIIYIKTGIYDEIVAIENTKPNLTLIGDGQDSTIITGNLSASNVR-----RTFYTATFASN-----GKGFIGVDMCFRNTVGPAKGPAVALRVSGDMSVIYRCRVEGYQDALYPHIDRQFYRECFITGTVDFICGNAAAVFQFCQIVARQPNMGQSNFITAQSRETKDDKSGFSIQNCNITASSDLDTATVKTYLGRPWRIFSTVAVLQSFIGDLVDPAGWTPW 457          
BLAST of FC878402 vs. ExPASy Swiss-Prot
Match: PME_PRUPE (Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.604e-36
Identity = 90/253 (35.57%), Postives = 129/253 (50.99%), Query Frame = 2
Query:  167 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCK-----SQGFITAQSRKSSQETTGYVFLRCVITGNG-------GTGYMYLGRPWGPFGRVVFAFTYMDQCIRHVXWHNW 889
            VAQDGTG++  V +A+   P  +  R +I I  G Y++ V + K K  + + G   + T+++ N +           V G  TF   +  V G  F+A +ITFEN+A     QAVA+R  +D   FY C   G+QDTLY H  +Q+ +DC I G+VDFIFG++T + ++C I  K      +  ITAQ RK   E TG     C IT +         +   YLGRPW  + R V   +++   IR   W  W
Sbjct:  211 VAQDGTGNFTNVTDAVLAAPDYSMRRYVIYIKRGTYKENVEIKKKKWNLMMIGDGMDATIISGNRSF----------VDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVFYRCNIRGYQDTLYTHTMRQFYRDCKISGTVDFIFGDATVVFQNCQILAKKGLPNQKNSITAQGRKDPNEPTGISIQFCNITADSDLEAASVNSTPTYLGRPWKLYSRTVIMQSFLSNVIRPEGWLEW 453          
BLAST of FC878402 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.917e-35
Identity = 84/253 (33.20%), Postives = 133/253 (52.57%), Query Frame = 2
Query:  161 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKS----QGFITAQSRKSSQETTGYVFLRCVITGNG------GTGYMYLGRPWGPFGRVVFAFTYMDQCIRHVXWHNW 889
            + VAQDG+G+ +T+QEA+         R +I I  G Y + + V K KN++   G     T++T + +             G  TF   +V V G++F+A +IT  N+A   + QAVA+R  +D   FY C F G+QDTLY+H  +Q+ ++C I G+VDFIFGN+  ++++C+I  +        +TAQ R    ++TG +   C +T          +   +LGRPW  + R V+  T++D  I    W  W
Sbjct:  203 IVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTYNENIEV-KLKNIM-FVGDGIGKTIITGSKSVGG----------GATTFKSATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEW 443          
The following BLAST results are available for this feature:
BLAST of FC878402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
PME32_ARATH5.389e-3837.70Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME13_ARATH5.389e-3835.18Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME56_ARATH9.192e-3834.94Probable pectinesterase 56 OS=Arabidopsis thaliana... [more]
PME18_ARATH3.493e-3733.86Pectinesterase/pectinesterase inhibitor 18 OS=Arab... [more]
PME41_ARATH1.016e-3634.35Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME51_ARATH2.957e-3636.98Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME_MEDSA3.862e-3635.42Pectinesterase/pectinesterase inhibitor OS=Medicag... [more]
PME42_ARATH3.862e-3634.52Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME_PRUPE8.604e-3635.57Pectinesterase/pectinesterase inhibitor PPE8B OS=P... [more]
PME2_CITSI1.917e-3533.20Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CG12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878402 ID=FC878402; Name=FC878402; organism=Citrus clementina; type=EST; length=891bp
AGATTCTCTCTTTACATAAATAAAACCATTTAGCCACAATTACACCTTTT
TGTTTAAATTTATCTTTGGGTGCGTTATTTCTCAGCAATCGATCCCATCG
CCGCCTGCGCGGTGCGGGTGTGTTAGTTTCTTTTTGGTTTTGAAAATGGC
ATCATGTGTGGTGACGGTGGCGCAGGATGGGACGGGGCATTACAGGACGG
TGCAGGAGGCAATAGATAGGGTGCCGCTGTGCAACACTTGTCGGACTCTG
ATTCGTATATCACCTGGGGTTTATAGACAGCCGGTGTATGTGCCAAAGAC
TAAGAACCTCATTACACTCGCGGGTCGTTGTCCCGAAAACACCGTACTCA
CTTGGAATAACACCGCCACTAAAATTGAACACCATCAGGCTGCGAGGGTA
ATTGGGACTGGGACTTTTGGGTGTGGGAGTGTGATTGTGGAAGGAGAAGA
TTTCGTTGCTGAGAATATCACTTTCGAGAATTCTGCACCTGAGGGTTCCG
GCCAAGCTGTGGCAATCAGGGTAACTGCAGACCGATGCGCCTTCTATAAC
TGCAGGTTTCTTGGTTGGCAGGATACTCTTTACTTGCATTATGGAAAACA
GTATCTGAAAGATTGCTATATTGAAGGAAGTGTGGATTTTATATTTGGGA
ATAGTACTGCTCTCATAGAGCATTGTCATATCCACTGCAAGTCGCAAGGT
TTTATTACTGCACAAAGCAGGAAATCCTCTCAGGAGACAACTGGTTATGT
GTTTTTGAGATGTGTGATCACTGGGAATGGAGGGACAGGATATATGTATC
TTGGACGCCCATGGGGACCTTTCGGAAGGGTGGTCTTTGCATTTACATAT
ATGGATCAATGTATCAGACATGTANGCTGGCATAACTGGGG
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