FC878403

Overview
NameFC878403
Unique NameFC878403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length893
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8446 contig Ccv1_Contig8446:48..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4D_ARATH (Putative RING-H2 finger protein ATL4D OS=Arabidopsis thaliana GN=ATL4D PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.282e-28
Identity = 91/244 (37.30%), Postives = 117/244 (47.95%), Query Frame = 1
Query:  151 LFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQ---CTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQKR--PPRSRSIG----WRRPSGWFP 855
            LFLF     LPYVT Q         S      +   +I+ ++L+S+F +L    VY      C E             GG      R  RG+D  VI +FP FLYS V+  KIG G +ECA+CL EF DEE LR +P CSH FH +CID WLS+ +TCPVCRANL  + G++     P  + DV +   ++G   +QE        R      V   N      PRSRS G    W  P  + P
Sbjct:   20 LFLF---QCLPYVTCQQGSE-----SAGRNGKSKESSIIGIVLLSLFLLL--LVVYCLNYGCCIEENET---------GGHEVLHSRVRRGIDKDVIESFPAFLYSEVKAFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVCRANLSLKSGDS----FPHPSMDVETGNAQRG---VQE----SPDERSLTGSSVTCNNNANYTTPRSRSTGLLSSWHVPELFLP 233          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4A_ARATH (RING-H2 finger protein ATL4A OS=Arabidopsis thaliana GN=ATL4A PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.621e-27
Identity = 58/118 (49.15%), Postives = 75/118 (63.56%), Query Frame = 1
Query:  289 FFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 642
            F+I+ +   YIR+C  R   + D     I       RR  RGLD   I +FP+F+Y+  R ++ G G LEC VCLNEF D+ETLRL+P C HVFH DC+D WLS  +TCP+CRA +VP
Sbjct:   23 FYIINY---YIRRCRNRAAAAGD-----IEEARMSPRRPPRGLDAEAIKSFPSFVYTEARGIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPICRAKVVP 132          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4K_ARATH (RING-H2 finger protein ATL4K OS=Arabidopsis thaliana GN=ATL4K PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.454e-24
Identity = 65/168 (38.69%), Postives = 92/168 (54.76%), Query Frame = 1
Query:  241 KFNGTMAIVTVILVSVFFILGFFSVYIR-QCTERGRNSPDAFATII---GGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPG---ETPSSFIPVLNPDVGSSRLEQGSD 723
            K + ++ ++ +IL  +FFI G   + +R   T   R+  D F  +    G + Q       G+D S I+T P F Y ++  LK      +CAVCL EF  E+ LRL+PKCSH FHMDCID WL +H+TCP+CR++L+       +  SSF+ VL      S  E G D
Sbjct:   46 KISPSILLIIIILSIIFFISGLLHLLVRFLLTPSSRDREDYFDNVTALQGQLQQLFHLHDSGVDQSFIDTLPVFHYKSIIGLK--NYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLLSDLSSHQDPRSSFLLVLESASDHSSREIGGD 211          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4I_ARATH (Putative RING-H2 finger protein ATL4I OS=Arabidopsis thaliana GN=ATL4I PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.887e-23
Identity = 58/135 (42.96%), Postives = 79/135 (58.52%), Query Frame = 1
Query:  262 IVTVILVSVFFILGFFSVYIRQC-----TERGRNSPDAFATIIGGINQRSRRGAR-GLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQP 648
            I+TVIL+ VFF +GFF++Y  +C      +  R            + Q        GL+  +IN+FPTF YS+V++L+  K  LECA+CL EF  +  LRL+  C HVFH +CID W  +H TCPVCR +L P P
Sbjct:   26 ILTVILL-VFFFIGFFTLYFCKCFLDTMVQAWRLHHGGDTVSDNPLQQPEAPPVNPGLELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHVFHQECIDLWFESHRTCPVCRRDLDPPP 159          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL2C_ARATH (Putative RING-H2 finger protein ATL2C OS=Arabidopsis thaliana GN=ATL2C PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.871e-22
Identity = 52/137 (37.96%), Postives = 79/137 (57.66%), Query Frame = 1
Query:  241 KFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAF----ATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 639
            K    + ++ +IL  +FFI G   + ++      R S + +      + G + Q       G+D S+I+T P F Y ++  LKI     +C VCL EF  E+ LRL+PKCSH FH++CID WL +H+TCP+CR+NL+
Sbjct:   38 KITPNILLIIIILSIIFFISGLLHILVKFLLTPSRESREDYFDNVTALQGQLQQLFNLHDSGVDQSLIDTLPVFHYKSIVGLKISP--FDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLL 172          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5L_ARATH (Putative RING-H2 finger protein ATL5L OS=Arabidopsis thaliana GN=ATL5L PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.444e-22
Identity = 68/197 (34.52%), Postives = 100/197 (50.76%), Query Frame = 1
Query:  262 IVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGAR-----------------GLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETL-RLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ-PGETPSSFIPVLNPDVGSSRLEQGSDNIQEI-----SSTDVQRRDEEAPD 780
            I+TVIL+ VFFI GFF++Y  +C          + T+    N     G                   GL+  +I ++P F +S+V++L+  K  LECA+CL EF +E  L RL+  C HVFH +CID WL ++ TCPVCR NL P  P       I V+  +   +R ++ +    E+     SS + +R+ E  PD
Sbjct:   28 ILTVILLVVFFI-GFFAIYFCKCF---------YHTLTEAWNHHYHNGLPENQIQAQQEPVQPPVNPGLEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHILLRLLTTCYHVFHQECIDQWLESNKTCPVCRRNLDPNAPENIKELIIEVIQENAHENRDQEQTSTSNEVMLSRQSSGNNERKIETLPD 214          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5C_ARATH (RING-H2 finger protein ATL5C OS=Arabidopsis thaliana GN=ATL5C PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.529e-21
Identity = 61/152 (40.13%), Postives = 82/152 (53.95%), Query Frame = 1
Query:  238 PKFNGTMAIVTVILVSVFFILGFFSV------YIRQCTERGR----NSPDAFA-TIIGG--INQRSRRGAR---GLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ 645
            P+ N T +++  I V +  +  FFS+      Y++ C  R      N P  FA T  GG   N     G R   G+D SVI + P F + A+   K G   LECAVCL  F   E LRL+PKC H FH++C+D WL AH+TCP+CR  + P+
Sbjct:   46 PRHNFTSSLMPGIAVVIAVLTAFFSLTFLLLLYVKHCKRRNGSVYVNHPQRFAITRYGGGYYNGGGVVGGRKNSGIDRSVIESLPVFRFGALSGHKDG---LECAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPE 194          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL2D_ARATH (Putative RING-H2 finger protein ATL2D OS=Arabidopsis thaliana GN=ATL2D PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.609e-21
Identity = 72/211 (34.12%), Postives = 103/211 (48.82%), Query Frame = 1
Query:  157 LFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIG------GINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEE 771
            LF ++  L YV+AQ+          T   F  ++AI+T +   VF +     VY +      R+  D+    I       G+  RS R + GLD   I + P F +SA++ LK G   LEC+VCL++F D E LRL+PKC H FH+ CID WL  H TCP+CR  +           + VL     S R+   S+  +E S  ++    EE
Sbjct:   10 LFFFIIFLDYVSAQSPPPPN--LYATSDLFKPSLAIITGVFSIVFTLTFVLLVYAKCFHNDLRSETDSDGERIRHDRLWQGLFNRSSRFS-GLDKKAIESLPFFRFSALKGLKQG---LECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCRNRV------NIEDDLSVLGNSSTSLRILNQSETREEDSRLEIYIEREE 208          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL2E_ARATH (RING-H2 finger protein ATL2E OS=Arabidopsis thaliana GN=ATL2E PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.341e-20
Identity = 50/144 (34.72%), Postives = 78/144 (54.17%), Query Frame = 1
Query:  247 NGTMAIVTVILVSVFFILGFFSVYIRQC---------------TERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRAN 633
            + TMA+   IL+   F +GFFSVY R                 T   R SP   +T +  +  R     RGLD   + + P + Y+   + +    + +C +CL++F + ET+++IP C HVFH+DC+D WLS++ TCP+CR+N
Sbjct:   47 DSTMALTIFILLVALFFMGFFSVYFRHFADSSSSTVDISSMPRTRSSRMSPRRLSTSV--VVSRPYSFRRGLDSQAVRSLPVYRYTKAAKQR----NEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSN 184          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL3A_ARATH (RING-H2 finger protein ATL3A OS=Arabidopsis thaliana GN=ATL3A PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.303e-19
Identity = 51/153 (33.33%), Postives = 80/153 (52.29%), Query Frame = 1
Query:  244 FNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIG---------GINQRSRRGAR------------GLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 639
            F+  +  +  IL S F ++ ++++  + C  R  NS    A  I          G N  +  GA             GLD+S+I +   + Y   R++     S +C+VCL+EF + E+LRL+PKC+H FH+ CID WL +H+ CP+CRA +V
Sbjct:   56 FSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKY---RKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIV 205          
The following BLAST results are available for this feature:
BLAST of FC878403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ATL4D_ARATH2.282e-2837.30Putative RING-H2 finger protein ATL4D OS=Arabidops... [more]
ATL4A_ARATH5.621e-2749.15RING-H2 finger protein ATL4A OS=Arabidopsis thalia... [more]
ATL4K_ARATH4.454e-2438.69RING-H2 finger protein ATL4K OS=Arabidopsis thalia... [more]
ATL4I_ARATH2.887e-2342.96Putative RING-H2 finger protein ATL4I OS=Arabidops... [more]
ATL2C_ARATH1.871e-2237.96Putative RING-H2 finger protein ATL2C OS=Arabidops... [more]
ATL5L_ARATH2.444e-2234.52Putative RING-H2 finger protein ATL5L OS=Arabidops... [more]
ATL5C_ARATH3.529e-2140.13RING-H2 finger protein ATL5C OS=Arabidopsis thalia... [more]
ATL2D_ARATH4.609e-2134.12Putative RING-H2 finger protein ATL2D OS=Arabidops... [more]
ATL2E_ARATH1.341e-2034.72RING-H2 finger protein ATL2E OS=Arabidopsis thalia... [more]
ATL3A_ARATH3.303e-1933.33RING-H2 finger protein ATL3A OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878403 ID=FC878403; Name=FC878403; organism=Citrus clementina; type=EST; length=893bp
ACAAATTTTCAGAGCTCCGAGCAAAAGAACCACTCATGATCATGAACTAT
AACTACAATTACTTTACTTGAAGTGATGACTGTTCTAACGCCTAATCCGA
GCCGTTCAATTTTCAATCCTATGATATGCGATCATGGCGTGGTCAACTTT
CTTTTTCTCTTTCTCTATCTCCACGCCTTACCGTATGTCACCGCACAAAC
TCCACCGCCGCCACCGGACGCGTTTTCTGTTACGGGGCCGAAATTCAACG
GTACTATGGCCATAGTAACCGTAATATTGGTCAGCGTTTTCTTCATCTTG
GGCTTCTTCTCCGTTTACATCCGTCAGTGCACTGAAAGGGGCCGAAACAG
CCCTGACGCTTTTGCTACTATAATTGGAGGGATCAACCAACGGTCCCGCA
GAGGGGCGCGCGGGCTTGACGATTCTGTTATCAACACTTTTCCCACCTTC
CTCTACTCGGCGGTCAGAGAGCTTAAAATCGGCAAGGGTTCTTTAGAATG
CGCGGTTTGCTTGAACGAGTTTGGAGATGAGGAAACGCTGCGTTTGATAC
CAAAGTGTAGCCACGTGTTTCACATGGATTGCATCGACGCTTGGTTGTCT
GCTCATAACACGTGTCCCGTCTGCCGCGCAAATTTGGTGCCACAACCTGG
CGAAACTCCCTCCAGCTTCATTCCAGTTCTTAACCCGGATGTTGGCTCGA
GTCGATTGGAACAAGGTTCAGATAATATTCAAGAGATTTCATCGACTGAT
GTGCAAAGGAGAGATGAAGAAGCTCCTGACGTGATCCTGACCAATCAGAA
AAGGCCACCTAGATCGAGATCGATAGGGTGGAGGAGGCCGTCCGGTTGGT
TTCCAGTTCACACTCCCCCGGTCACTCAGTGGTCCCACCCGGG
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