FC878403
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1O_ARATH (RING-H2 finger protein ATL1O OS=Arabidopsis thaliana GN=ATL1O PE=2 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 4.314e-19 Identity = 64/206 (31.07%), Postives = 96/206 (46.60%), Query Frame = 1 Query: 184 YVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGA---------RGLDDSVINTFPTFLYSAVRELKIGKGSLE---CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPV-LNPDVGSSRLEQGSDNIQEISSTDVQRR 762 Y+ +Q DA S+ T A++ ++L F + FFS + + + S + + + R GL S+IN+ Y K G G +E C VCLNEF ++E+LRL+PKC+H FH+ CID WLS+H CP+CRA + TP PV + P S LE +D + E +++ R Sbjct: 70 YLPSQDSSSSLDAISI----ITITGAVLAILLTGFFLVAKFFSDSVNRVNQGTYQSDNEDNDTVMEEEFQDREQVDHPIWLIRTTGLQQSIINSITICNY------KRGDGLIERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTPRYSGPVEVTPGGSGSHLE--NDGVDEEDHGEIENR 263
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4J_ARATH (RING-H2 finger protein ATL4J OS=Arabidopsis thaliana GN=ATL4J PE=2 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 5.634e-19 Identity = 60/168 (35.71%), Postives = 83/168 (49.40%), Query Frame = 1 Query: 148 FLFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCT--------ERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCR 627 F F LH+ Y +AQT + V F ++A+VT +L +F + VY + C +R R+ I + S GLD + I + P F +SA LK K L+C+VCL++F E LRL+PKC H FH+ CID WL H TCP+CR Sbjct: 5 FFFFLPLLHS--YASAQTPPPFRNGDLVAN--FEPSLAVVTGVLAIMFALTFVLLVYAKCCHIDLRSGSGDRRRHDRRLRQGIFFNRSTASSDRFSGLDKTAIESLPLFRFSA---LKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCR 165
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL2H_ARATH (RING-H2 finger protein ATL2H OS=Arabidopsis thaliana GN=ATL2H PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 7.358e-19 Identity = 64/176 (36.36%), Postives = 86/176 (48.86%), Query Frame = 1 Query: 265 VTVILVSVFFIL---GFFSVYIRQ-CTERGRNSPDAFATIIGG-INQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAP 777 VTV+L V + GFFS+++ Q R + + T G I+ + GLD +I +FP F YS+ + G ECA+CL+EF DE+T+RLI C H FH +CID W H TCPVCR L P +GS RLE N I+ D+ +E P Sbjct: 23 VTVVLTGVLLFVIFAGFFSLFLWQFLLNRLFTTWNLQRTPYGDLIHVATPPENTGLDPFIIRSFPVFHYSSATKKNHGT---ECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCRCELDPGM--------------IGSGRLE-SFHNTVTITIQDINHDEENPP 180
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4G_ARATH (RING-H2 finger protein ATL4G OS=Arabidopsis thaliana GN=ATL4G PE=2 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 9.610e-19 Identity = 53/173 (30.64%), Postives = 88/173 (50.87%), Query Frame = 1 Query: 256 MAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSF----IPVLNPDVGSSRLEQGSDNIQEISSTDVQRR 762 M T++++ + ++ +Y R R +SP T GL+ S+I + P F +SAV L ++EC+VCL+EF D E+ R++P C H FH+ CID W +H++CP+CR+ + P G SS I + +P G + +G++ + D QR+ Sbjct: 1 MLTTTILILLIVILMVSLHLYYRWYLLR--SSPFNRTTAASTFFTDPSSTPGGLNPSIIKSLPIFTFSAVTALF----AMECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCRSQIEPFAGGVKSSMDEVAISISDPVYGDTNHHEGTETTGDSVPEDSQRK 167
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5K_ARATH (RING-H2 finger protein ATL5K OS=Arabidopsis thaliana GN=ATL5K PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.255e-18 Identity = 66/219 (30.14%), Postives = 96/219 (43.84%), Query Frame = 1 Query: 226 SVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQC--------------TERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTF-----------LYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSF-IPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQKR 804 S TG F V IL + F ++ ++ I+ C + R RN D + +RGLD+SVI P F +++ E + K S EC+VCL+EF DEE LR+IP CSH+FH+DCID WL + CP+CR + P P +P+ + + E+ S+ RD +LT Q+R Sbjct: 28 SSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSLSRRRRNDQDPLMVYSPELR------SRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSFPPDRVSAPSTSPENLVMLRGENEYVVIELGSSIGSDRDSPRHGRLLTGQER 240
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4H_ARATH (Putative RING-H2 finger protein ATL4H OS=Arabidopsis thaliana GN=ATL4H PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.796e-18 Identity = 62/233 (26.61%), Postives = 101/233 (43.35%), Query Frame = 1 Query: 91 PNPS--RSIFNPMICDHGVVNFLFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTV----ILVSVFFILGFFSVYIRQCTERGRN---SPDAFATIIGGINQRSR----------RGARGLDDSVINTFPTF-LYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNI 729 PNPS NP C G+ + Y+ + F G N ++ + + I + F + ++++ + C N S + II +N R GLDD++I F L KI +C++CL EF ++E+LRL+PKC+H FH+ CID WL +H+ CP+CRA ++ + P + V+N D +S + N+ Sbjct: 31 PNPSAWNQYINPRDCTQGLCSTFCP----QWCTYINFSPPPISYEQFLNDGVASNPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASESGRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIKKIGFFKLKKHQNGFKIN--GTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIVPTTQQPEHHVVVMNLDRFTSNVGSAEGNV 257
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1D_ARATH (RING-H2 finger protein ATL1D OS=Arabidopsis thaliana GN=ATL1D PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.796e-18 Identity = 50/137 (36.50%), Postives = 74/137 (54.01%), Query Frame = 1 Query: 265 VTVILVSVFFILGFFSVYIRQCTERGR----------NSPDAFA---TIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 636 + V+L +FFI + +R ++ R N F+ T + Q GLD ++I+ P FLY +E+K K +CAVCL EF +++ LRL+P CSH FH+DCID WL +++TCP+CR L Sbjct: 56 IIVLLSVIFFICSILHLLVRYYLKKKRSNLSSSPNESNQNPEFSDSDTYQRQLQQLFHLHDSGLDQALIDALPVFLY---KEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCRGTL 189
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1A_ARATH (RING-H2 finger protein ATL1A OS=Arabidopsis thaliana GN=ATL1A PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.796e-18 Identity = 54/150 (36.00%), Postives = 78/150 (52.00%), Query Frame = 1 Query: 226 SVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTE--------RGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIG-----KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 636 S +G F V IL + F ++ ++ I+ C R R S D +I ++ +R GLD+S I P F + R++ G K S EC+VCLNEF ++E LR+IP C HVFH+DCID WL + CP+CR ++ Sbjct: 35 SSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSDQNPLMIYSPHEVNR----GLDESAIRAIPVFKFKK-RDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSV 179
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL3F_ARATH (RING-H2 finger protein ATL3F OS=Arabidopsis thaliana GN=ATL3F PE=2 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 6.229e-18 Identity = 50/136 (36.76%), Postives = 70/136 (51.47%), Query Frame = 1 Query: 256 MAIVTVILVSVFFILGFFSVYIR-----------QCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA 630 M VIL V ++ F +Y R + R R + F T S +RGLD +VI + P F +S + K +ECAVCL+EF + ET R++P C H FH+DCID W +H+TCP+CR+ Sbjct: 31 MLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSD----ETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRS 162
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5I_ARATH (RING-H2 finger protein ATL5I OS=Arabidopsis thaliana GN=ATL5I PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 1.062e-17 Identity = 61/197 (30.96%), Postives = 92/197 (46.70%), Query Frame = 1 Query: 232 TGPKFNGTMAIVTVILVSVFFILGFFSVYIR--------QCTERGRNSPDAFAT--IIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGS-------LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPG---ETPS-SFIPVLNPDVGSSRLEQGSDNIQEISSTDVQR 759 +G + + + V VIL +FFI G + +R + R P+ + + + Q GLD + I+ P F Y + G G +CAVCL EF +++ LRL+P CSH FH++CID WL +++TCP+CR L PG E P F + + G + E GS EI V++ Sbjct: 37 SGNRISPAVLFVIVILAVLFFISGLLHLLVRFLIKHPSATASSRSNRFPEISTSDALQRQLQQLFHLNDSGLDQAFIDALPVFHYKEIVGSAGGGGGNGAAQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCRGTLF-SPGFSMENPMFDFDDIREDEEGVT--ENGSQKTMEIQEIVVEK 230 The following BLAST results are available for this feature:
BLAST of FC878403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878403 ID=FC878403; Name=FC878403; organism=Citrus clementina; type=EST; length=893bpback to top |