FC878403

Overview
NameFC878403
Unique NameFC878403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length893
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8446 contig Ccv1_Contig8446:48..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1O_ARATH (RING-H2 finger protein ATL1O OS=Arabidopsis thaliana GN=ATL1O PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 4.314e-19
Identity = 64/206 (31.07%), Postives = 96/206 (46.60%), Query Frame = 1
Query:  184 YVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGA---------RGLDDSVINTFPTFLYSAVRELKIGKGSLE---CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPV-LNPDVGSSRLEQGSDNIQEISSTDVQRR 762
            Y+ +Q      DA S+       T A++ ++L   F +  FFS  + +  +    S +     +     + R             GL  S+IN+     Y      K G G +E   C VCLNEF ++E+LRL+PKC+H FH+ CID WLS+H  CP+CRA +      TP    PV + P    S LE  +D + E    +++ R
Sbjct:   70 YLPSQDSSSSLDAISI----ITITGAVLAILLTGFFLVAKFFSDSVNRVNQGTYQSDNEDNDTVMEEEFQDREQVDHPIWLIRTTGLQQSIINSITICNY------KRGDGLIERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGIAMISVTTPRYSGPVEVTPGGSGSHLE--NDGVDEEDHGEIENR 263          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4J_ARATH (RING-H2 finger protein ATL4J OS=Arabidopsis thaliana GN=ATL4J PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.634e-19
Identity = 60/168 (35.71%), Postives = 83/168 (49.40%), Query Frame = 1
Query:  148 FLFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCT--------ERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCR 627
            F F    LH+  Y +AQT     +   V    F  ++A+VT +L  +F +     VY + C         +R R+       I    +  S     GLD + I + P F +SA   LK  K  L+C+VCL++F   E LRL+PKC H FH+ CID WL  H TCP+CR
Sbjct:    5 FFFFLPLLHS--YASAQTPPPFRNGDLVAN--FEPSLAVVTGVLAIMFALTFVLLVYAKCCHIDLRSGSGDRRRHDRRLRQGIFFNRSTASSDRFSGLDKTAIESLPLFRFSA---LKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCR 165          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL2H_ARATH (RING-H2 finger protein ATL2H OS=Arabidopsis thaliana GN=ATL2H PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.358e-19
Identity = 64/176 (36.36%), Postives = 86/176 (48.86%), Query Frame = 1
Query:  265 VTVILVSVFFIL---GFFSVYIRQ-CTERGRNSPDAFATIIGG-INQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAP 777
            VTV+L  V   +   GFFS+++ Q    R   + +   T  G  I+  +     GLD  +I +FP F YS+  +   G    ECA+CL+EF DE+T+RLI  C H FH +CID W   H TCPVCR  L P                +GS RLE    N   I+  D+   +E  P
Sbjct:   23 VTVVLTGVLLFVIFAGFFSLFLWQFLLNRLFTTWNLQRTPYGDLIHVATPPENTGLDPFIIRSFPVFHYSSATKKNHGT---ECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCRCELDPGM--------------IGSGRLE-SFHNTVTITIQDINHDEENPP 180          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4G_ARATH (RING-H2 finger protein ATL4G OS=Arabidopsis thaliana GN=ATL4G PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 9.610e-19
Identity = 53/173 (30.64%), Postives = 88/173 (50.87%), Query Frame = 1
Query:  256 MAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSF----IPVLNPDVGSSRLEQGSDNIQEISSTDVQRR 762
            M   T++++ +  ++    +Y R    R  +SP    T              GL+ S+I + P F +SAV  L     ++EC+VCL+EF D E+ R++P C H FH+ CID W  +H++CP+CR+ + P  G   SS     I + +P  G +   +G++   +    D QR+
Sbjct:    1 MLTTTILILLIVILMVSLHLYYRWYLLR--SSPFNRTTAASTFFTDPSSTPGGLNPSIIKSLPIFTFSAVTALF----AMECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCRSQIEPFAGGVKSSMDEVAISISDPVYGDTNHHEGTETTGDSVPEDSQRK 167          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5K_ARATH (RING-H2 finger protein ATL5K OS=Arabidopsis thaliana GN=ATL5K PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.255e-18
Identity = 66/219 (30.14%), Postives = 96/219 (43.84%), Query Frame = 1
Query:  226 SVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQC--------------TERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTF-----------LYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSF-IPVLNPDVGSSRLEQGSDNIQEISSTDVQRRDEEAPDVILTNQKR 804
            S TG  F      V  IL + F ++ ++   I+ C              + R RN  D        +       +RGLD+SVI   P F           +++   E +  K S EC+VCL+EF DEE LR+IP CSH+FH+DCID WL  +  CP+CR  +       P     P  +P+       +    + E+ S+    RD      +LT Q+R
Sbjct:   28 SSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSLSRRRRNDQDPLMVYSPELR------SRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSFPPDRVSAPSTSPENLVMLRGENEYVVIELGSSIGSDRDSPRHGRLLTGQER 240          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4H_ARATH (Putative RING-H2 finger protein ATL4H OS=Arabidopsis thaliana GN=ATL4H PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.796e-18
Identity = 62/233 (26.61%), Postives = 101/233 (43.35%), Query Frame = 1
Query:   91 PNPS--RSIFNPMICDHGVVNFLFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTV----ILVSVFFILGFFSVYIRQCTERGRN---SPDAFATIIGGINQRSR----------RGARGLDDSVINTFPTF-LYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNI 729
            PNPS      NP  C  G+ +            Y+         + F   G   N  ++ + +    I  + F +  ++++  + C     N   S    + II  +N   R              GLDD++I     F L       KI     +C++CL EF ++E+LRL+PKC+H FH+ CID WL +H+ CP+CRA ++    + P   + V+N D  +S +     N+
Sbjct:   31 PNPSAWNQYINPRDCTQGLCSTFCP----QWCTYINFSPPPISYEQFLNDGVASNPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASESGRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIKKIGFFKLKKHQNGFKIN--GTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIVPTTQQPEHHVVVMNLDRFTSNVGSAEGNV 257          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1D_ARATH (RING-H2 finger protein ATL1D OS=Arabidopsis thaliana GN=ATL1D PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.796e-18
Identity = 50/137 (36.50%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  265 VTVILVSVFFILGFFSVYIRQCTERGR----------NSPDAFA---TIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 636
            + V+L  +FFI     + +R   ++ R          N    F+   T    + Q       GLD ++I+  P FLY   +E+K  K   +CAVCL EF +++ LRL+P CSH FH+DCID WL +++TCP+CR  L
Sbjct:   56 IIVLLSVIFFICSILHLLVRYYLKKKRSNLSSSPNESNQNPEFSDSDTYQRQLQQLFHLHDSGLDQALIDALPVFLY---KEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCRGTL 189          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1A_ARATH (RING-H2 finger protein ATL1A OS=Arabidopsis thaliana GN=ATL1A PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.796e-18
Identity = 54/150 (36.00%), Postives = 78/150 (52.00%), Query Frame = 1
Query:  226 SVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTE--------RGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIG-----KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 636
            S +G  F      V  IL + F ++ ++   I+ C          R R S D    +I   ++ +R    GLD+S I   P F +   R++  G     K S EC+VCLNEF ++E LR+IP C HVFH+DCID WL  +  CP+CR ++
Sbjct:   35 SSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSDQNPLMIYSPHEVNR----GLDESAIRAIPVFKFKK-RDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSV 179          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL3F_ARATH (RING-H2 finger protein ATL3F OS=Arabidopsis thaliana GN=ATL3F PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 6.229e-18
Identity = 50/136 (36.76%), Postives = 70/136 (51.47%), Query Frame = 1
Query:  256 MAIVTVILVSVFFILGFFSVYIR-----------QCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRA 630
            M    VIL  V  ++ F  +Y R           +   R R +   F T        S   +RGLD +VI + P F +S     +  K  +ECAVCL+EF + ET R++P C H FH+DCID W  +H+TCP+CR+
Sbjct:   31 MLSAIVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSD----ETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRS 162          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5I_ARATH (RING-H2 finger protein ATL5I OS=Arabidopsis thaliana GN=ATL5I PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.062e-17
Identity = 61/197 (30.96%), Postives = 92/197 (46.70%), Query Frame = 1
Query:  232 TGPKFNGTMAIVTVILVSVFFILGFFSVYIR--------QCTERGRNSPDAFAT--IIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGS-------LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPG---ETPS-SFIPVLNPDVGSSRLEQGSDNIQEISSTDVQR 759
            +G + +  +  V VIL  +FFI G   + +R          + R    P+   +  +   + Q       GLD + I+  P F Y  +     G G         +CAVCL EF +++ LRL+P CSH FH++CID WL +++TCP+CR  L   PG   E P   F  +   + G +  E GS    EI    V++
Sbjct:   37 SGNRISPAVLFVIVILAVLFFISGLLHLLVRFLIKHPSATASSRSNRFPEISTSDALQRQLQQLFHLNDSGLDQAFIDALPVFHYKEIVGSAGGGGGNGAAQEPFDCAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCRGTLF-SPGFSMENPMFDFDDIREDEEGVT--ENGSQKTMEIQEIVVEK 230          
The following BLAST results are available for this feature:
BLAST of FC878403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ATL1O_ARATH4.314e-1931.07RING-H2 finger protein ATL1O OS=Arabidopsis thalia... [more]
ATL4J_ARATH5.634e-1935.71RING-H2 finger protein ATL4J OS=Arabidopsis thalia... [more]
ATL2H_ARATH7.358e-1936.36RING-H2 finger protein ATL2H OS=Arabidopsis thalia... [more]
ATL4G_ARATH9.610e-1930.64RING-H2 finger protein ATL4G OS=Arabidopsis thalia... [more]
ATL5K_ARATH1.255e-1830.14RING-H2 finger protein ATL5K OS=Arabidopsis thalia... [more]
ATL4H_ARATH2.796e-1826.61Putative RING-H2 finger protein ATL4H OS=Arabidops... [more]
ATL1D_ARATH2.796e-1836.50RING-H2 finger protein ATL1D OS=Arabidopsis thalia... [more]
ATL1A_ARATH2.796e-1836.00RING-H2 finger protein ATL1A OS=Arabidopsis thalia... [more]
ATL3F_ARATH6.229e-1836.76RING-H2 finger protein ATL3F OS=Arabidopsis thalia... [more]
ATL5I_ARATH1.062e-1730.96RING-H2 finger protein ATL5I OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878403 ID=FC878403; Name=FC878403; organism=Citrus clementina; type=EST; length=893bp
ACAAATTTTCAGAGCTCCGAGCAAAAGAACCACTCATGATCATGAACTAT
AACTACAATTACTTTACTTGAAGTGATGACTGTTCTAACGCCTAATCCGA
GCCGTTCAATTTTCAATCCTATGATATGCGATCATGGCGTGGTCAACTTT
CTTTTTCTCTTTCTCTATCTCCACGCCTTACCGTATGTCACCGCACAAAC
TCCACCGCCGCCACCGGACGCGTTTTCTGTTACGGGGCCGAAATTCAACG
GTACTATGGCCATAGTAACCGTAATATTGGTCAGCGTTTTCTTCATCTTG
GGCTTCTTCTCCGTTTACATCCGTCAGTGCACTGAAAGGGGCCGAAACAG
CCCTGACGCTTTTGCTACTATAATTGGAGGGATCAACCAACGGTCCCGCA
GAGGGGCGCGCGGGCTTGACGATTCTGTTATCAACACTTTTCCCACCTTC
CTCTACTCGGCGGTCAGAGAGCTTAAAATCGGCAAGGGTTCTTTAGAATG
CGCGGTTTGCTTGAACGAGTTTGGAGATGAGGAAACGCTGCGTTTGATAC
CAAAGTGTAGCCACGTGTTTCACATGGATTGCATCGACGCTTGGTTGTCT
GCTCATAACACGTGTCCCGTCTGCCGCGCAAATTTGGTGCCACAACCTGG
CGAAACTCCCTCCAGCTTCATTCCAGTTCTTAACCCGGATGTTGGCTCGA
GTCGATTGGAACAAGGTTCAGATAATATTCAAGAGATTTCATCGACTGAT
GTGCAAAGGAGAGATGAAGAAGCTCCTGACGTGATCCTGACCAATCAGAA
AAGGCCACCTAGATCGAGATCGATAGGGTGGAGGAGGCCGTCCGGTTGGT
TTCCAGTTCACACTCCCCCGGTCACTCAGTGGTCCCACCCGGG
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