FC878403

Overview
NameFC878403
Unique NameFC878403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length893
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8446 contig Ccv1_Contig8446:48..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL3K_ARATH (RING-H2 finger protein ATL3K OS=Arabidopsis thaliana GN=ATL3K PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.945e-16
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 1
Query:  412 GLDDSVINTFPTFLYSA-VRELKIGKG-------SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSS 666
            GLD SVIN++P F ++  +  +  G G          C++CL E+ +EE LR++P+C H FH+ C+DAWL  + +CPVCR + +P P  TP S
Sbjct:   99 GLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQS 191          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL2I_ARATH (RING-H2 finger protein ATL2I OS=Arabidopsis thaliana GN=ATL2I PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.945e-16
Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 1
Query:  412 GLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRL 708
            GLD+  I ++P  LYS   E K    +  CA+CL ++  +  LR +P C+H+FH+ CID WL  + TCPVCR + +P P  TP + +  L   V ++R+
Sbjct:  121 GLDEDTIQSYPKILYS---EAKGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASSVAATRM 216          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: EL5_ORYSJ (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.299e-15
Identity = 53/163 (32.52%), Postives = 78/163 (47.85%), Query Frame = 1
Query:  250 GTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGAR---------GLDDSVINTFPTFLYS-------AVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV-------PQPGETPSSF 669
            G +A V  +L+ VF  L    V ++   +  R +    +T   G   R RR +          G+D  V+ + P  +YS       A  E +     +ECAVCL E  D E  R +P+C H FH +C+D WL +H+TCP+CR  +V       P P E P+S+
Sbjct:   36 GGIATVAAVLI-VFAALTLAFVLLQCYCDERRRAVTTTSTSGRGRRPRPRRRSGSGGDGGTGGGVDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVVPPPPLPPVPPEPPASY 197          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5F_ARATH (RING-H2 finger protein ATL5F OS=Arabidopsis thaliana GN=ATL5F PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.215e-15
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 1
Query:  412 GLDDSVINTFPTFLYSAVRELKIGKGSL---ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV----PQPGETPSSFIP 675
            GL  S IN+        V   K G+G +   EC+VCLNEF ++E+LRL+PKCSH FH++CID WL +H  CP+CRA ++    P   ET ++  P
Sbjct:  109 GLHRSAINSI------TVVGFKKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQETETNHQP 197          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL2L_ARATH (RING-H2 finger protein ATL2L OS=Arabidopsis thaliana GN=ATL2L PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.779e-15
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  409 RGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETP 660
            RGL+ +VI + PTF   A     +   + ECAVCL+   +++  R +P C H+FH+DC+D WL+  +TCPVCR  + P+P   P
Sbjct:   80 RGLNPTVIASLPTFTVGATDG--VAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCRTEVEPRPRLEP 161          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5N_ARATH (Putative RING-H2 finger protein ATL5N OS=Arabidopsis thaliana GN=ATL5N PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.935e-15
Identity = 45/114 (39.47%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  415 LDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRAN--LVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTD 750
            +D S I+  P   Y  +  L+      +CAVCL EF  E+ LRL+PKCSH FH++CID WL  ++TCP+CR N  L+   G   SS I +++   G +   Q SD+   ++  D
Sbjct:   96 IDQSFIDALPLLHYKTMIGLRHDLS--DCAVCLREFTAEDELRLLPKCSHAFHVECIDTWLLTNSTCPLCRDNLLLLGLTGTASSSTIVLVHESDGDN--SQDSDSSFMLTDLD 205          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5M_ARATH (RING-H2 finger protein ATL5M OS=Arabidopsis thaliana GN=ATL5M PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.935e-15
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 1
Query:  436 TFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFI 672
            T PT +YS+  +L++     ECA+CL+EF   E+++++ KC H FH+ CI  WLS  ++CP CR ++  Q  ETPSS I
Sbjct:   88 TTPTLVYSS--DLELAGAEAECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRSSCPTCRTSIFSQHSETPSSHI 164          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1L_ARATH (RING-H2 finger protein ATL1L OS=Arabidopsis thaliana GN=ATL1L PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.935e-15
Identity = 47/126 (37.30%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  262 IVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 639
            +++V+L ++   LG  S+   +C  R  N   + A   GG N   R    G+    + +F T  YS   EL +     ECA+CL+EF  EE ++L+P C H FH+ CID WLS+H++CP CR  L+
Sbjct:   59 VLSVLLCALVCSLGLNSII--RCALRCSNLVPSEA---GGDNYPVRLTNTGVKRKALKSFQTVSYST--ELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLI 177          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1J_ARATH (RING-H2 finger protein ATL1J OS=Arabidopsis thaliana GN=ATL1J PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.935e-15
Identity = 45/128 (35.16%), Postives = 68/128 (53.12%), Query Frame = 1
Query:  256 MAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 639
            + +++V++  +   LG    YI +C  R R+S    +  I  ++       +G+    +  FP   YS  RE+ +     EC +CL++F   E LRL+PKC+H FH+ CID WL  H TCP CR  LV
Sbjct:   59 LMLLSVLICGIICCLGLH--YIIRCAFR-RSSRFMISEPISSLSTPRSSSNKGIKKKALRMFPVVSYS--REMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRHCLV 181          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4E_ARATH (RING-H2 finger protein ATL4E OS=Arabidopsis thaliana GN=ATL4E PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.446e-15
Identity = 45/131 (34.35%), Postives = 73/131 (55.73%), Query Frame = 1
Query:  412 GLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPG-----ETPSSFIPVLNPDVGSSRLEQGSDNIQE-ISST-DVQRRDEEAPDV 783
            GL   +    P  +Y   +E  I K S +C+VCL ++  EE L+ +P C H FHM+CID WL++H TCP+CR +L+P+P      ++      + N + G +  +  S +  E IS T DV+  + ++ +V
Sbjct:   86 GLSKDIREMLPVVIY---KESFIVKDS-QCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSLDLSHQSTEIVSSIENSNGGEASTQPDSQSATEAISHTDDVEEGNRDSQEV 212          
The following BLAST results are available for this feature:
BLAST of FC878403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ATL3K_ARATH9.945e-1641.94RING-H2 finger protein ATL3K OS=Arabidopsis thalia... [more]
ATL2I_ARATH9.945e-1639.39RING-H2 finger protein ATL2I OS=Arabidopsis thalia... [more]
EL5_ORYSJ1.299e-1532.52E3 ubiquitin-protein ligase EL5 OS=Oryza sativa su... [more]
ATL5F_ARATH2.215e-1545.26RING-H2 finger protein ATL5F OS=Arabidopsis thalia... [more]
ATL2L_ARATH3.779e-1541.67RING-H2 finger protein ATL2L OS=Arabidopsis thalia... [more]
ATL5N_ARATH4.935e-1539.47Putative RING-H2 finger protein ATL5N OS=Arabidops... [more]
ATL5M_ARATH4.935e-1544.30RING-H2 finger protein ATL5M OS=Arabidopsis thalia... [more]
ATL1L_ARATH4.935e-1537.30RING-H2 finger protein ATL1L OS=Arabidopsis thalia... [more]
ATL1J_ARATH4.935e-1535.16RING-H2 finger protein ATL1J OS=Arabidopsis thalia... [more]
ATL4E_ARATH6.446e-1534.35RING-H2 finger protein ATL4E OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878403 ID=FC878403; Name=FC878403; organism=Citrus clementina; type=EST; length=893bp
ACAAATTTTCAGAGCTCCGAGCAAAAGAACCACTCATGATCATGAACTAT
AACTACAATTACTTTACTTGAAGTGATGACTGTTCTAACGCCTAATCCGA
GCCGTTCAATTTTCAATCCTATGATATGCGATCATGGCGTGGTCAACTTT
CTTTTTCTCTTTCTCTATCTCCACGCCTTACCGTATGTCACCGCACAAAC
TCCACCGCCGCCACCGGACGCGTTTTCTGTTACGGGGCCGAAATTCAACG
GTACTATGGCCATAGTAACCGTAATATTGGTCAGCGTTTTCTTCATCTTG
GGCTTCTTCTCCGTTTACATCCGTCAGTGCACTGAAAGGGGCCGAAACAG
CCCTGACGCTTTTGCTACTATAATTGGAGGGATCAACCAACGGTCCCGCA
GAGGGGCGCGCGGGCTTGACGATTCTGTTATCAACACTTTTCCCACCTTC
CTCTACTCGGCGGTCAGAGAGCTTAAAATCGGCAAGGGTTCTTTAGAATG
CGCGGTTTGCTTGAACGAGTTTGGAGATGAGGAAACGCTGCGTTTGATAC
CAAAGTGTAGCCACGTGTTTCACATGGATTGCATCGACGCTTGGTTGTCT
GCTCATAACACGTGTCCCGTCTGCCGCGCAAATTTGGTGCCACAACCTGG
CGAAACTCCCTCCAGCTTCATTCCAGTTCTTAACCCGGATGTTGGCTCGA
GTCGATTGGAACAAGGTTCAGATAATATTCAAGAGATTTCATCGACTGAT
GTGCAAAGGAGAGATGAAGAAGCTCCTGACGTGATCCTGACCAATCAGAA
AAGGCCACCTAGATCGAGATCGATAGGGTGGAGGAGGCCGTCCGGTTGGT
TTCCAGTTCACACTCCCCCGGTCACTCAGTGGTCCCACCCGGG
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