FC878403
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL3K_ARATH (RING-H2 finger protein ATL3K OS=Arabidopsis thaliana GN=ATL3K PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 9.945e-16 Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 1 Query: 412 GLDDSVINTFPTFLYSA-VRELKIGKG-------SLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSS 666 GLD SVIN++P F ++ + + G G C++CL E+ +EE LR++P+C H FH+ C+DAWL + +CPVCR + +P P TP S Sbjct: 99 GLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQS 191
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL2I_ARATH (RING-H2 finger protein ATL2I OS=Arabidopsis thaliana GN=ATL2I PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 9.945e-16 Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 1 Query: 412 GLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRL 708 GLD+ I ++P LYS E K + CA+CL ++ + LR +P C+H+FH+ CID WL + TCPVCR + +P P TP + + L V ++R+ Sbjct: 121 GLDEDTIQSYPKILYS---EAKGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLASSVAATRM 216
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: EL5_ORYSJ (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.299e-15 Identity = 53/163 (32.52%), Postives = 78/163 (47.85%), Query Frame = 1 Query: 250 GTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGAR---------GLDDSVINTFPTFLYS-------AVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV-------PQPGETPSSF 669 G +A V +L+ VF L V ++ + R + +T G R RR + G+D V+ + P +YS A E + +ECAVCL E D E R +P+C H FH +C+D WL +H+TCP+CR +V P P E P+S+ Sbjct: 36 GGIATVAAVLI-VFAALTLAFVLLQCYCDERRRAVTTTSTSGRGRRPRPRRRSGSGGDGGTGGGVDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVVPPPPLPPVPPEPPASY 197
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5F_ARATH (RING-H2 finger protein ATL5F OS=Arabidopsis thaliana GN=ATL5F PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.215e-15 Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 1 Query: 412 GLDDSVINTFPTFLYSAVRELKIGKGSL---ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV----PQPGETPSSFIP 675 GL S IN+ V K G+G + EC+VCLNEF ++E+LRL+PKCSH FH++CID WL +H CP+CRA ++ P ET ++ P Sbjct: 109 GLHRSAINSI------TVVGFKKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQETETNHQP 197
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL2L_ARATH (RING-H2 finger protein ATL2L OS=Arabidopsis thaliana GN=ATL2L PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.779e-15 Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 1 Query: 409 RGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETP 660 RGL+ +VI + PTF A + + ECAVCL+ +++ R +P C H+FH+DC+D WL+ +TCPVCR + P+P P Sbjct: 80 RGLNPTVIASLPTFTVGATDG--VAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCRTEVEPRPRLEP 161
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5N_ARATH (Putative RING-H2 finger protein ATL5N OS=Arabidopsis thaliana GN=ATL5N PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.935e-15 Identity = 45/114 (39.47%), Postives = 65/114 (57.02%), Query Frame = 1 Query: 415 LDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRAN--LVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTD 750 +D S I+ P Y + L+ +CAVCL EF E+ LRL+PKCSH FH++CID WL ++TCP+CR N L+ G SS I +++ G + Q SD+ ++ D Sbjct: 96 IDQSFIDALPLLHYKTMIGLRHDLS--DCAVCLREFTAEDELRLLPKCSHAFHVECIDTWLLTNSTCPLCRDNLLLLGLTGTASSSTIVLVHESDGDN--SQDSDSSFMLTDLD 205
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5M_ARATH (RING-H2 finger protein ATL5M OS=Arabidopsis thaliana GN=ATL5M PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.935e-15 Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 1 Query: 436 TFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFI 672 T PT +YS+ +L++ ECA+CL+EF E+++++ KC H FH+ CI WLS ++CP CR ++ Q ETPSS I Sbjct: 88 TTPTLVYSS--DLELAGAEAECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRSSCPTCRTSIFSQHSETPSSHI 164
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1L_ARATH (RING-H2 finger protein ATL1L OS=Arabidopsis thaliana GN=ATL1L PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.935e-15 Identity = 47/126 (37.30%), Postives = 70/126 (55.56%), Query Frame = 1 Query: 262 IVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 639 +++V+L ++ LG S+ +C R N + A GG N R G+ + +F T YS EL + ECA+CL+EF EE ++L+P C H FH+ CID WLS+H++CP CR L+ Sbjct: 59 VLSVLLCALVCSLGLNSII--RCALRCSNLVPSEA---GGDNYPVRLTNTGVKRKALKSFQTVSYST--ELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLI 177
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1J_ARATH (RING-H2 finger protein ATL1J OS=Arabidopsis thaliana GN=ATL1J PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.935e-15 Identity = 45/128 (35.16%), Postives = 68/128 (53.12%), Query Frame = 1 Query: 256 MAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 639 + +++V++ + LG YI +C R R+S + I ++ +G+ + FP YS RE+ + EC +CL++F E LRL+PKC+H FH+ CID WL H TCP CR LV Sbjct: 59 LMLLSVLICGIICCLGLH--YIIRCAFR-RSSRFMISEPISSLSTPRSSSNKGIKKKALRMFPVVSYS--REMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRHCLV 181
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4E_ARATH (RING-H2 finger protein ATL4E OS=Arabidopsis thaliana GN=ATL4E PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 6.446e-15 Identity = 45/131 (34.35%), Postives = 73/131 (55.73%), Query Frame = 1 Query: 412 GLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPG-----ETPSSFIPVLNPDVGSSRLEQGSDNIQE-ISST-DVQRRDEEAPDV 783 GL + P +Y +E I K S +C+VCL ++ EE L+ +P C H FHM+CID WL++H TCP+CR +L+P+P ++ + N + G + + S + E IS T DV+ + ++ +V Sbjct: 86 GLSKDIREMLPVVIY---KESFIVKDS-QCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSLDLSHQSTEIVSSIENSNGGEASTQPDSQSATEAISHTDDVEEGNRDSQEV 212 The following BLAST results are available for this feature:
BLAST of FC878403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878403 ID=FC878403; Name=FC878403; organism=Citrus clementina; type=EST; length=893bpback to top |