FC878403

Overview
NameFC878403
Unique NameFC878403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length893
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8446 contig Ccv1_Contig8446:48..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5B_ARATH (RING-H2 finger protein ATL5B OS=Arabidopsis thaliana GN=ATL5B PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.100e-14
Identity = 44/137 (32.12%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  262 IVTVILVSVFFILGFFSVY--IRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSS 666
            I+  +L ++   LG  SV   + +CT R   + D   T        +   A+G+    +   P   YS   ++K    + EC +CL +F + ET+R++PKC+H FH+ CID WL +H++CP CR +L+    +TP++
Sbjct:   44 ILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDT--------NANVAKGIKKRALKVIPVDSYSPELKMK----ATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLLEH--QTPAN 166          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1I_ARATH (RING-H2 finger protein ATL1I OS=Arabidopsis thaliana GN=ATL1I PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.100e-14
Identity = 45/128 (35.16%), Postives = 67/128 (52.34%), Query Frame = 1
Query:  256 MAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 639
            + +++V++  +   LG    YI +C  R R S    +  I G++       +G++   +  FP   YS    L  G G  EC +CL++F   E +R++PKC H FH+ CID WL  H TCP CR  LV
Sbjct:   60 LMLLSVLICGIICCLGLH--YIIRCAFR-RTSSFMISEPIAGLSTPCGSSNKGINKKALRMFPVVSYSPEMNLP-GLGE-ECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCLV 182          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5A_ARATH (RING-H2 finger protein ATL5A OS=Arabidopsis thaliana GN=ATL5A PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.178e-14
Identity = 48/136 (35.29%), Postives = 71/136 (52.21%), Query Frame = 1
Query:  244 FNGTMAIV-TVILVSVFFILGFFSVYIRQCTER---GRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 639
            F+  M I+   +L ++   LG  S+   +C  R   G +S  A  T+             GL    +  FP   Y +  E+KI   + ECA+CL EF D E +R++P C+H FHM CID WL +H++CP CR +L+
Sbjct:   30 FDANMVIILAALLCALILALGLNSIL--RCAMRCGFGLSSSAAAGTVAD---------RAGLKKRELKKFPVAEYGS-GEVKIA--ATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLI 151          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4F_ARATH (RING-H2 finger protein ATL4F OS=Arabidopsis thaliana GN=ATL4F PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.178e-14
Identity = 40/142 (28.17%), Postives = 71/142 (50.00%), Query Frame = 1
Query:  412 GLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPG-----ETPSSFIPVLNPDVGSSRLEQGSDNIQE--ISSTDVQRRDEEAPDVILTNQKRPPRS 816
            GL   +    P  +Y             +C+VCL ++  EE L+ +P C H FHM+CID WL++H TCP+CR +L+P+P      ++      + N + G +  +  S +  E  I   DV+  + ++ +V+  +++    S
Sbjct:   72 GLSKDIREMLPIVIYKE----SFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSVDLSHQSIEIVSSIENTNGGEASTQPDSQSATEAIIHIDDVEEGNRDSIEVVKESEENDRNS 209          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1K_ARATH (RING-H2 finger protein ATL1K OS=Arabidopsis thaliana GN=ATL1K PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.178e-14
Identity = 42/128 (32.81%), Postives = 67/128 (52.34%), Query Frame = 1
Query:  256 MAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 639
            M ++++++  +   LG    YI +C  R R++    +  +  ++       +G+    +  FP   YS   E+ +     EC +CL++F   E LRL+PKC+H FH+ CID WL  H TCP CR  LV
Sbjct:   59 MMLLSILICGIICCLGLH--YIIRCALR-RSTRFMISEPVPSLSSTRGSSNKGIKKKALRMFPVVSYSP--EMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLV 181          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1P_ARATH (RING-H2 finger protein ATL1P OS=Arabidopsis thaliana GN=ATL1P PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.074e-13
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 1
Query:  484 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSS-RLEQGSDNIQEISSTD 750
            K  LEC++CL+E    +  RL+PKC+H FH++CID W  +H+TCP+CR                VL P+  SS R+EQ  DN +   +T+
Sbjct:  122 KDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNT--------------VLGPEQASSKRVEQVPDNAENAGTTN 197          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5E_ARATH (Putative RING-H2 finger protein ATL5E OS=Arabidopsis thaliana GN=ATL5E PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.537e-13
Identity = 44/142 (30.99%), Postives = 70/142 (49.30%), Query Frame = 1
Query:  256 MAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETP-SSFIPV 678
            +AI   ILV + FI+    + IR    +     +A + ++  +   +     GLD  VI ++P  +    R L        C++CL ++   E +R IP+C+H FH DC+D WL    TCP+CR +  P    TP S  +P+
Sbjct:   17 IAIAVSILVLISFIMLASYICIRS---KSTGRDEATSDVVLDLPSPAAEVKLGLDRPVIESYPRIVLGDSRRLPRPNNG-PCSICLCDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPL 154          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5D_ARATH (Putative RING-H2 finger protein ATL5D OS=Arabidopsis thaliana GN=ATL5D PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.619e-13
Identity = 34/87 (39.08%), Postives = 50/87 (57.47%), Query Frame = 1
Query:  412 GLDDSVINTFPTFLYSAVR-ELKIGKGSLE---CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETP 660
            GL + VI  FP   Y   R    + K S     C++CL ++   + +R++P C+H+FH +C+D WL  H TCPVCR + +P P  TP
Sbjct:   96 GLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTP 182          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1E_ARATH (RING-H2 finger protein ATL1E OS=Arabidopsis thaliana GN=ATL1E PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.033e-13
Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 1
Query:  412 GLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCR 627
            GLD S I ++        R L  G   + C +CL+E+  +ET+R +P+C H FH+ CID WL  H++CPVCR
Sbjct:  225 GLDQSTIESYKKVELGESRRLP-GTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCR 295          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4L_ARATH (RING-H2 finger protein ATL4L OS=Arabidopsis thaliana GN=ATL4L PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.029e-12
Identity = 28/54 (51.85%), Postives = 39/54 (72.22%), Query Frame = 1
Query:  481 GKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 642
            G  S ECA+C+ EF + E +R++P CSH FH+ CID WL++ ++CP CR  LVP
Sbjct:  107 GDSSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRILVP 160          
The following BLAST results are available for this feature:
BLAST of FC878403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ATL5B_ARATH1.100e-1432.12RING-H2 finger protein ATL5B OS=Arabidopsis thalia... [more]
ATL1I_ARATH1.100e-1435.16RING-H2 finger protein ATL1I OS=Arabidopsis thalia... [more]
ATL5A_ARATH4.178e-1435.29RING-H2 finger protein ATL5A OS=Arabidopsis thalia... [more]
ATL4F_ARATH4.178e-1428.17RING-H2 finger protein ATL4F OS=Arabidopsis thalia... [more]
ATL1K_ARATH4.178e-1432.81RING-H2 finger protein ATL1K OS=Arabidopsis thalia... [more]
ATL1P_ARATH2.074e-1340.00RING-H2 finger protein ATL1P OS=Arabidopsis thalia... [more]
ATL5E_ARATH3.537e-1330.99Putative RING-H2 finger protein ATL5E OS=Arabidops... [more]
ATL5D_ARATH4.619e-1339.08Putative RING-H2 finger protein ATL5D OS=Arabidops... [more]
ATL1E_ARATH6.033e-1343.06RING-H2 finger protein ATL1E OS=Arabidopsis thalia... [more]
ATL4L_ARATH1.029e-1251.85RING-H2 finger protein ATL4L OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA94CF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878403 ID=FC878403; Name=FC878403; organism=Citrus clementina; type=EST; length=893bp
ACAAATTTTCAGAGCTCCGAGCAAAAGAACCACTCATGATCATGAACTAT
AACTACAATTACTTTACTTGAAGTGATGACTGTTCTAACGCCTAATCCGA
GCCGTTCAATTTTCAATCCTATGATATGCGATCATGGCGTGGTCAACTTT
CTTTTTCTCTTTCTCTATCTCCACGCCTTACCGTATGTCACCGCACAAAC
TCCACCGCCGCCACCGGACGCGTTTTCTGTTACGGGGCCGAAATTCAACG
GTACTATGGCCATAGTAACCGTAATATTGGTCAGCGTTTTCTTCATCTTG
GGCTTCTTCTCCGTTTACATCCGTCAGTGCACTGAAAGGGGCCGAAACAG
CCCTGACGCTTTTGCTACTATAATTGGAGGGATCAACCAACGGTCCCGCA
GAGGGGCGCGCGGGCTTGACGATTCTGTTATCAACACTTTTCCCACCTTC
CTCTACTCGGCGGTCAGAGAGCTTAAAATCGGCAAGGGTTCTTTAGAATG
CGCGGTTTGCTTGAACGAGTTTGGAGATGAGGAAACGCTGCGTTTGATAC
CAAAGTGTAGCCACGTGTTTCACATGGATTGCATCGACGCTTGGTTGTCT
GCTCATAACACGTGTCCCGTCTGCCGCGCAAATTTGGTGCCACAACCTGG
CGAAACTCCCTCCAGCTTCATTCCAGTTCTTAACCCGGATGTTGGCTCGA
GTCGATTGGAACAAGGTTCAGATAATATTCAAGAGATTTCATCGACTGAT
GTGCAAAGGAGAGATGAAGAAGCTCCTGACGTGATCCTGACCAATCAGAA
AAGGCCACCTAGATCGAGATCGATAGGGTGGAGGAGGCCGTCCGGTTGGT
TTCCAGTTCACACTCCCCCGGTCACTCAGTGGTCCCACCCGGG
back to top