FC878403
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5B_ARATH (RING-H2 finger protein ATL5B OS=Arabidopsis thaliana GN=ATL5B PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.100e-14 Identity = 44/137 (32.12%), Postives = 74/137 (54.01%), Query Frame = 1 Query: 262 IVTVILVSVFFILGFFSVY--IRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSS 666 I+ +L ++ LG SV + +CT R + D T + A+G+ + P YS ++K + EC +CL +F + ET+R++PKC+H FH+ CID WL +H++CP CR +L+ +TP++ Sbjct: 44 ILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDT--------NANVAKGIKKRALKVIPVDSYSPELKMK----ATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLLEH--QTPAN 166
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1I_ARATH (RING-H2 finger protein ATL1I OS=Arabidopsis thaliana GN=ATL1I PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 1.100e-14 Identity = 45/128 (35.16%), Postives = 67/128 (52.34%), Query Frame = 1 Query: 256 MAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 639 + +++V++ + LG YI +C R R S + I G++ +G++ + FP YS L G G EC +CL++F E +R++PKC H FH+ CID WL H TCP CR LV Sbjct: 60 LMLLSVLICGIICCLGLH--YIIRCAFR-RTSSFMISEPIAGLSTPCGSSNKGINKKALRMFPVVSYSPEMNLP-GLGE-ECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCLV 182
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5A_ARATH (RING-H2 finger protein ATL5A OS=Arabidopsis thaliana GN=ATL5A PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.178e-14 Identity = 48/136 (35.29%), Postives = 71/136 (52.21%), Query Frame = 1 Query: 244 FNGTMAIV-TVILVSVFFILGFFSVYIRQCTER---GRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 639 F+ M I+ +L ++ LG S+ +C R G +S A T+ GL + FP Y + E+KI + ECA+CL EF D E +R++P C+H FHM CID WL +H++CP CR +L+ Sbjct: 30 FDANMVIILAALLCALILALGLNSIL--RCAMRCGFGLSSSAAAGTVAD---------RAGLKKRELKKFPVAEYGS-GEVKIA--ATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLI 151
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4F_ARATH (RING-H2 finger protein ATL4F OS=Arabidopsis thaliana GN=ATL4F PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.178e-14 Identity = 40/142 (28.17%), Postives = 71/142 (50.00%), Query Frame = 1 Query: 412 GLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPG-----ETPSSFIPVLNPDVGSSRLEQGSDNIQE--ISSTDVQRRDEEAPDVILTNQKRPPRS 816 GL + P +Y +C+VCL ++ EE L+ +P C H FHM+CID WL++H TCP+CR +L+P+P ++ + N + G + + S + E I DV+ + ++ +V+ +++ S Sbjct: 72 GLSKDIREMLPIVIYKE----SFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSVDLSHQSIEIVSSIENTNGGEASTQPDSQSATEAIIHIDDVEEGNRDSIEVVKESEENDRNS 209
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1K_ARATH (RING-H2 finger protein ATL1K OS=Arabidopsis thaliana GN=ATL1K PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.178e-14 Identity = 42/128 (32.81%), Postives = 67/128 (52.34%), Query Frame = 1 Query: 256 MAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV 639 M ++++++ + LG YI +C R R++ + + ++ +G+ + FP YS E+ + EC +CL++F E LRL+PKC+H FH+ CID WL H TCP CR LV Sbjct: 59 MMLLSILICGIICCLGLH--YIIRCALR-RSTRFMISEPVPSLSSTRGSSNKGIKKKALRMFPVVSYSP--EMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLV 181
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1P_ARATH (RING-H2 finger protein ATL1P OS=Arabidopsis thaliana GN=ATL1P PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.074e-13 Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 1 Query: 484 KGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSS-RLEQGSDNIQEISSTD 750 K LEC++CL+E + RL+PKC+H FH++CID W +H+TCP+CR VL P+ SS R+EQ DN + +T+ Sbjct: 122 KDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNT--------------VLGPEQASSKRVEQVPDNAENAGTTN 197
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5E_ARATH (Putative RING-H2 finger protein ATL5E OS=Arabidopsis thaliana GN=ATL5E PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.537e-13 Identity = 44/142 (30.99%), Postives = 70/142 (49.30%), Query Frame = 1 Query: 256 MAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETP-SSFIPV 678 +AI ILV + FI+ + IR + +A + ++ + + GLD VI ++P + R L C++CL ++ E +R IP+C+H FH DC+D WL TCP+CR + P TP S +P+ Sbjct: 17 IAIAVSILVLISFIMLASYICIRS---KSTGRDEATSDVVLDLPSPAAEVKLGLDRPVIESYPRIVLGDSRRLPRPNNG-PCSICLCDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPL 154
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL5D_ARATH (Putative RING-H2 finger protein ATL5D OS=Arabidopsis thaliana GN=ATL5D PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.619e-13 Identity = 34/87 (39.08%), Postives = 50/87 (57.47%), Query Frame = 1 Query: 412 GLDDSVINTFPTFLYSAVR-ELKIGKGSLE---CAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETP 660 GL + VI FP Y R + K S C++CL ++ + +R++P C+H+FH +C+D WL H TCPVCR + +P P TP Sbjct: 96 GLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTP 182
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL1E_ARATH (RING-H2 finger protein ATL1E OS=Arabidopsis thaliana GN=ATL1E PE=2 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 6.033e-13 Identity = 31/72 (43.06%), Postives = 44/72 (61.11%), Query Frame = 1 Query: 412 GLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCR 627 GLD S I ++ R L G + C +CL+E+ +ET+R +P+C H FH+ CID WL H++CPVCR Sbjct: 225 GLDQSTIESYKKVELGESRRLP-GTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCR 295
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL4L_ARATH (RING-H2 finger protein ATL4L OS=Arabidopsis thaliana GN=ATL4L PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.029e-12 Identity = 28/54 (51.85%), Postives = 39/54 (72.22%), Query Frame = 1 Query: 481 GKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP 642 G S ECA+C+ EF + E +R++P CSH FH+ CID WL++ ++CP CR LVP Sbjct: 107 GDSSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRILVP 160 The following BLAST results are available for this feature:
BLAST of FC878403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878403 ID=FC878403; Name=FC878403; organism=Citrus clementina; type=EST; length=893bpback to top |