FC878403

Overview
NameFC878403
Unique NameFC878403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length893
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8446 contig Ccv1_Contig8446:48..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11
Identity = 49/136 (36.03%), Postives = 64/136 (47.06%), Query Frame = 1
Query:  340 GRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISST 747
            G N  D   T +  +NQ    G    D+  I   PT     + E  +G G LEC VC  ++   E +R +P C+H+FH DCI  WL  H+TCPVCR +L  Q   T        NP  G S +   S +    SST
Sbjct:  181 GANGLDTIITQL--LNQFENTGPPPADNEKIQALPTI---QITEEHVGSG-LECPVCKEDYTVGECVRQLP-CNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTAT--------NPP-GLSEMTFSSSSTSSSSST 300          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL3H_ARATH (Putative RING-H2 finger protein ATL3H OS=Arabidopsis thaliana GN=ATL3H PE=5 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.941e-11
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 1
Query:  406 ARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 636
            A G++ SV+ + P   ++A       K ++EC VCL++F DE+  R++P C+H FH D  D WL +  TCP CR N+
Sbjct:   52 ATGINPSVLLSIPVVSFNA----NAFKDNIECVVCLSKFIDEDKARVLPSCNHCFHFDFTDTWLHSDYTCPNCRKNV 124          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: RN126_BOVIN (RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.535e-11
Identity = 49/135 (36.30%), Postives = 65/135 (48.15%), Query Frame = 1
Query:  340 GRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ------PGETPSSFIPVLNPDVGSSRLEQGSDN 726
            G N  DA  T +  +NQ    G    D   I   PT     V E  +G G LEC VC +++G  E +R +P C+H+FH  CI  WL  H++CPVCR +L  Q      PG    SF    +    SS    G++N
Sbjct:  185 GANGLDAIITQL--LNQFENTGPPPADKEKIQALPTV---PVTEEHVGSG-LECPVCKDDYGLGEHVRQLP-CNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATDPPGLAGVSF----SSSSSSSSSSPGNEN 308          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.535e-11
Identity = 44/116 (37.93%), Postives = 58/116 (50.00%), Query Frame = 1
Query:  340 GRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ------PGETPSSF 669
            G N  D   T +  +NQ    G    D   I   PT     + E  +G G LEC VC  ++   E++R +P C+H+FH DCI  WL  H+TCPVCR +L  Q      PG T  +F
Sbjct:  181 GANGLDTIITQL--LNQFENTGPPPADTDKIQALPTI---QITEEHVGFG-LECPVCKEDYTVGESVRQLP-CNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNPPGLTDMTF 289          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL2B_ARATH (RING-H2 finger protein ATL2B OS=Arabidopsis thaliana GN=ATL2B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.535e-11
Identity = 27/78 (34.62%), Postives = 44/78 (56.41%), Query Frame = 1
Query:  403 GARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 636
            G++GL   ++   P    +        + +  C+VCL +F   ET+R +P C H+FH+ CID WL  H +CP+CR ++
Sbjct:  164 GSKGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCRRDI 241          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL3E_ARATH (Putative RING-H2 finger protein ATL3E OS=Arabidopsis thaliana GN=ATL3E PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.311e-11
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1
Query:  493 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGET 657
            LEC VCL+E  D +  R++P C H FH++CID+WL +++TCP+CR  +  +   T
Sbjct:   86 LECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRKRVCLKQSRT 140          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.324e-11
Identity = 45/116 (38.79%), Postives = 58/116 (50.00%), Query Frame = 1
Query:  340 GRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ------PGETPSSF 669
            G N  DA  T +  +NQ    G    D   I   PT     V E  +G G LEC VC +++   E +R +P C+H+FH  CI  WL  H++CPVCR +L  Q      PG T  SF
Sbjct:  182 GANGLDAIITQL--LNQFENTGPPPADKEKIQALPTV---PVTEEHVGSG-LECPVCKDDYALGERVRQLP-CNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATNPPGLTGVSF 290          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ZNRF3_HUMAN (Zinc/RING finger protein 3 OS=Homo sapiens GN=ZNRF3 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 1
Query:  496 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLN 684
            +CA+CL ++ D E LR+IP C+H FH  C+D WL  H+TCP CR N++ Q G   +  +   N
Sbjct:  292 DCAICLEKYIDGEELRVIP-CTHRFHRKCVDPWLLQHHTCPHCRHNIIEQKGNPSAVCVETSN 353          
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: RHA4A_ARATH (RING-H2 zinc finger protein RHA4a OS=Arabidopsis thaliana GN=RHA4A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 38/121 (31.40%), Postives = 59/121 (48.76%), Query Frame = 1
Query:  274 ILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 636
            IL S+   L F+  Y+++      +SP      +   +Q S          V       L+  +   ++G     C VCL EF  +E L  +P C H+FH+DCI  WL +HNTCP+CR+++
Sbjct:   31 ILFSIILFLLFYLFYLKRRAS-SLSSPSPMILPVSSSHQTSSHLPSVCLLDVKVELKDKLHVVLFNEELGTRDSLCCVCLGEFELKEELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSSV 150          
The following BLAST results are available for this feature:
BLAST of FC878403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
R126A_XENLA1.486e-1136.03RING finger protein 126-A OS=Xenopus laevis GN=rnf... [more]
ATL3H_ARATH1.941e-1140.26Putative RING-H2 finger protein ATL3H OS=Arabidops... [more]
RN126_BOVIN2.535e-1136.30RING finger protein 126 OS=Bos taurus GN=RNF126 PE... [more]
R126B_XENLA2.535e-1137.93RING finger protein 126-B OS=Xenopus laevis GN=rnf... [more]
ATL2B_ARATH2.535e-1134.62RING-H2 finger protein ATL2B OS=Arabidopsis thalia... [more]
ATL3E_ARATH3.311e-1145.45Putative RING-H2 finger protein ATL3E OS=Arabidops... [more]
RN126_HUMAN4.324e-1138.79RING finger protein 126 OS=Homo sapiens GN=RNF126 ... [more]
ZNRF3_HUMAN9.632e-1144.44Zinc/RING finger protein 3 OS=Homo sapiens GN=ZNRF... [more]
RHA4A_ARATH9.632e-1131.40RING-H2 zinc finger protein RHA4a OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878403 ID=FC878403; Name=FC878403; organism=Citrus clementina; type=EST; length=893bp
ACAAATTTTCAGAGCTCCGAGCAAAAGAACCACTCATGATCATGAACTAT
AACTACAATTACTTTACTTGAAGTGATGACTGTTCTAACGCCTAATCCGA
GCCGTTCAATTTTCAATCCTATGATATGCGATCATGGCGTGGTCAACTTT
CTTTTTCTCTTTCTCTATCTCCACGCCTTACCGTATGTCACCGCACAAAC
TCCACCGCCGCCACCGGACGCGTTTTCTGTTACGGGGCCGAAATTCAACG
GTACTATGGCCATAGTAACCGTAATATTGGTCAGCGTTTTCTTCATCTTG
GGCTTCTTCTCCGTTTACATCCGTCAGTGCACTGAAAGGGGCCGAAACAG
CCCTGACGCTTTTGCTACTATAATTGGAGGGATCAACCAACGGTCCCGCA
GAGGGGCGCGCGGGCTTGACGATTCTGTTATCAACACTTTTCCCACCTTC
CTCTACTCGGCGGTCAGAGAGCTTAAAATCGGCAAGGGTTCTTTAGAATG
CGCGGTTTGCTTGAACGAGTTTGGAGATGAGGAAACGCTGCGTTTGATAC
CAAAGTGTAGCCACGTGTTTCACATGGATTGCATCGACGCTTGGTTGTCT
GCTCATAACACGTGTCCCGTCTGCCGCGCAAATTTGGTGCCACAACCTGG
CGAAACTCCCTCCAGCTTCATTCCAGTTCTTAACCCGGATGTTGGCTCGA
GTCGATTGGAACAAGGTTCAGATAATATTCAAGAGATTTCATCGACTGAT
GTGCAAAGGAGAGATGAAGAAGCTCCTGACGTGATCCTGACCAATCAGAA
AAGGCCACCTAGATCGAGATCGATAGGGTGGAGGAGGCCGTCCGGTTGGT
TTCCAGTTCACACTCCCCCGGTCACTCAGTGGTCCCACCCGGG
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