FC878403
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-11 Identity = 49/136 (36.03%), Postives = 64/136 (47.06%), Query Frame = 1 Query: 340 GRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISST 747 G N D T + +NQ G D+ I PT + E +G G LEC VC ++ E +R +P C+H+FH DCI WL H+TCPVCR +L Q T NP G S + S + SST Sbjct: 181 GANGLDTIITQL--LNQFENTGPPPADNEKIQALPTI---QITEEHVGSG-LECPVCKEDYTVGECVRQLP-CNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTAT--------NPP-GLSEMTFSSSSTSSSSST 300
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL3H_ARATH (Putative RING-H2 finger protein ATL3H OS=Arabidopsis thaliana GN=ATL3H PE=5 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.941e-11 Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 1 Query: 406 ARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 636 A G++ SV+ + P ++A K ++EC VCL++F DE+ R++P C+H FH D D WL + TCP CR N+ Sbjct: 52 ATGINPSVLLSIPVVSFNA----NAFKDNIECVVCLSKFIDEDKARVLPSCNHCFHFDFTDTWLHSDYTCPNCRKNV 124
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: RN126_BOVIN (RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.535e-11 Identity = 49/135 (36.30%), Postives = 65/135 (48.15%), Query Frame = 1 Query: 340 GRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ------PGETPSSFIPVLNPDVGSSRLEQGSDN 726 G N DA T + +NQ G D I PT V E +G G LEC VC +++G E +R +P C+H+FH CI WL H++CPVCR +L Q PG SF + SS G++N Sbjct: 185 GANGLDAIITQL--LNQFENTGPPPADKEKIQALPTV---PVTEEHVGSG-LECPVCKDDYGLGEHVRQLP-CNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATDPPGLAGVSF----SSSSSSSSSSPGNEN 308
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.535e-11 Identity = 44/116 (37.93%), Postives = 58/116 (50.00%), Query Frame = 1 Query: 340 GRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ------PGETPSSF 669 G N D T + +NQ G D I PT + E +G G LEC VC ++ E++R +P C+H+FH DCI WL H+TCPVCR +L Q PG T +F Sbjct: 181 GANGLDTIITQL--LNQFENTGPPPADTDKIQALPTI---QITEEHVGFG-LECPVCKEDYTVGESVRQLP-CNHLFHNDCIIPWLEQHDTCPVCRKSLSGQNTATNPPGLTDMTF 289
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL2B_ARATH (RING-H2 finger protein ATL2B OS=Arabidopsis thaliana GN=ATL2B PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.535e-11 Identity = 27/78 (34.62%), Postives = 44/78 (56.41%), Query Frame = 1 Query: 403 GARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 636 G++GL ++ P + + + C+VCL +F ET+R +P C H+FH+ CID WL H +CP+CR ++ Sbjct: 164 GSKGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPMCRRDI 241
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ATL3E_ARATH (Putative RING-H2 finger protein ATL3E OS=Arabidopsis thaliana GN=ATL3E PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.311e-11 Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1 Query: 493 LECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGET 657 LEC VCL+E D + R++P C H FH++CID+WL +++TCP+CR + + T Sbjct: 86 LECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRKRVCLKQSRT 140
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.324e-11 Identity = 45/116 (38.79%), Postives = 58/116 (50.00%), Query Frame = 1 Query: 340 GRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQ------PGETPSSF 669 G N DA T + +NQ G D I PT V E +G G LEC VC +++ E +R +P C+H+FH CI WL H++CPVCR +L Q PG T SF Sbjct: 182 GANGLDAIITQL--LNQFENTGPPPADKEKIQALPTV---PVTEEHVGSG-LECPVCKDDYALGERVRQLP-CNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATNPPGLTGVSF 290
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: ZNRF3_HUMAN (Zinc/RING finger protein 3 OS=Homo sapiens GN=ZNRF3 PE=2 SV=3) HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11 Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 1 Query: 496 ECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLN 684 +CA+CL ++ D E LR+IP C+H FH C+D WL H+TCP CR N++ Q G + + N Sbjct: 292 DCAICLEKYIDGEELRVIP-CTHRFHRKCVDPWLLQHHTCPHCRHNIIEQKGNPSAVCVETSN 353
BLAST of FC878403 vs. ExPASy Swiss-Prot
Match: RHA4A_ARATH (RING-H2 zinc finger protein RHA4a OS=Arabidopsis thaliana GN=RHA4A PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11 Identity = 38/121 (31.40%), Postives = 59/121 (48.76%), Query Frame = 1 Query: 274 ILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANL 636 IL S+ L F+ Y+++ +SP + +Q S V L+ + ++G C VCL EF +E L +P C H+FH+DCI WL +HNTCP+CR+++ Sbjct: 31 ILFSIILFLLFYLFYLKRRAS-SLSSPSPMILPVSSSHQTSSHLPSVCLLDVKVELKDKLHVVLFNEELGTRDSLCCVCLGEFELKEELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSSV 150 The following BLAST results are available for this feature:
BLAST of FC878403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878403 ID=FC878403; Name=FC878403; organism=Citrus clementina; type=EST; length=893bpback to top |