FC878404

Overview
NameFC878404
Unique NameFC878404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length878
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10528 contig Ccv1_Contig10528:1..878. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: S61A1_DANRE (Protein transport protein Sec61 subunit alpha-like 1 OS=Danio rerio GN=sec61al1 PE=2 SV=3)

HSP 1 Score: 445.277 bits (1144), Expect = 2.158e-124
Identity = 221/235 (94.04%), Postives = 230/235 (97.87%), Query Frame = 3 
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            M IKFLEVIKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGM+IT+GQAIVYVMTGMYG+PSE+GAG+CLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP TVNTGRGTEFEGA+IALFHLLATR D VRALREAFY
Sbjct:    1 MAIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFY 235
[Close]
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SC61A_HEMAM (Protein transport protein Sec61 subunit alpha OS=Hemitripterus americanus GN=sec61a PE=2 SV=3)

HSP 1 Score: 443.351 bits (1139), Expect = 8.201e-124
Identity = 220/235 (93.62%), Postives = 229/235 (97.45%), Query Frame = 3 
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            MGIKFLEVIKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKII VGDTPKDRALFNGAQKLFGM+IT+GQAIVYVMTGMYG+PSE+GAG+CLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP TVNTGRGTEFEGA+IALFHLLATR D VRALRE FY
Sbjct:    1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIGVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREGFY 235
[Close]
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: S61A2_PONAB (Protein transport protein Sec61 subunit alpha isoform 2 OS=Pongo abelii GN=SEC61A2 PE=2 SV=1)

HSP 1 Score: 443.351 bits (1139), Expect = 8.201e-124
Identity = 220/235 (93.62%), Postives = 230/235 (97.87%), Query Frame = 3 
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            MGIKFLEVIKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGM+IT+GQAIVYVMTGMYG+P+E+GAG+CLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKA SP T+NTGRGTEFEGAVIALFHLLATR D VRALREAFY
Sbjct:    1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKASSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFY 235
[Close]
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SC61A_BOVVA (Protein transport protein Sec61 subunit alpha OS=Bovichtus variegatus GN=sec61a PE=2 SV=3)

HSP 1 Score: 442.965 bits (1138), Expect = 1.071e-123
Identity = 219/235 (93.19%), Postives = 229/235 (97.45%), Query Frame = 3 
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            MGIKFLE IKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVILASNRGTLMELGI+PIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGM+IT+GQAIVYVMTGMYG+PSE+GAG+CLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAF P TVNTGRGTEFEGA+IALFHLLATR D VRALREAFY
Sbjct:    1 MGIKFLEFIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGIAPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFGPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFY 235
[Close]
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: S61A2_DANRE (Protein transport protein Sec61 subunit alpha-like 2 OS=Danio rerio GN=sec61al2 PE=2 SV=3)

HSP 1 Score: 441.81 bits (1135), Expect = 2.386e-123
Identity = 217/235 (92.34%), Postives = 230/235 (97.87%), Query Frame = 3 
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            M IKFLEVIKPFC++LPEI KPER+IQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVI+ASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGM+IT+GQA+VYVMTGMYG+PSE+GAG+CLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP TVNTGRGTEFEGA+IALFHLLATR D VRALREAFY
Sbjct:    1 MAIKFLEVIKPFCAVLPEIQKPERRIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVIMASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAVVYVMTGMYGDPSEMGAGICLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFY 235
[Close]
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SC61A_BORSA (Protein transport protein Sec61 subunit alpha OS=Boreogadus saida GN=sec61a PE=2 SV=3)

HSP 1 Score: 439.884 bits (1130), Expect = 9.067e-123
Identity = 218/235 (92.77%), Postives = 229/235 (97.45%), Query Frame = 3 
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            MGIKFLEVIKPFC++LPEI KPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVILASNRGTLMELGISPIVTS LIMQLLAGAKIIEVGD+PKDRALFNGAQKLFGM+IT+GQAIVYVMTGMYG+PSE+GAG+CL+IIIQLFVAGLIVLLLDELLQKGYGLGSGISL IATNICETIVWKAFSP TVNTGRGTEFEGA+IALFHLLATR D VRALREAFY
Sbjct:    1 MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSDLIMQLLAGAKIIEVGDSPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPSEMGAGICLVIIIQLFVAGLIVLLLDELLQKGYGLGSGISLLIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFY 235
[Close]
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: S61A1_BOVIN (Protein transport protein Sec61 subunit alpha isoform 1 OS=Bos taurus GN=SEC61A1 PE=2 SV=3)

HSP 1 Score: 439.499 bits (1129), Expect = 1.184e-122
Identity = 220/235 (93.62%), Postives = 227/235 (96.60%), Query Frame = 3 
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            MGIKFLEVIKPFC ILPEI KPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGM IT+GQ+IVYVMTGMYG+PSE+GAGVCLLI IQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP TVNTGRG EFEGA+IALFHLLATR D VRALREAFY
Sbjct:    1 MGIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMTITIGQSIVYVMTGMYGDPSEMGAGVCLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFY 235
[Close]
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: S61A1_RAT (Protein transport protein Sec61 subunit alpha isoform 1 OS=Rattus norvegicus GN=Sec61a1 PE=2 SV=2)

HSP 1 Score: 437.958 bits (1125), Expect = 3.445e-122
Identity = 218/235 (92.77%), Postives = 227/235 (96.60%), Query Frame = 3 
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            M IKFLEVIKPFC ILPEI KPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGM+IT+GQ+IVYVMTGMYG+PSE+GAG+CLLI IQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP TVNTGRG EFEGA+IALFHLLATR D VRALREAFY
Sbjct:    1 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFY 235
[Close]
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: S61A1_PONAB (Protein transport protein Sec61 subunit alpha isoform 1 OS=Pongo abelii GN=SEC61A1 PE=2 SV=3)

HSP 1 Score: 437.958 bits (1125), Expect = 3.445e-122
Identity = 218/235 (92.77%), Postives = 227/235 (96.60%), Query Frame = 3 
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            M IKFLEVIKPFC ILPEI KPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGM+IT+GQ+IVYVMTGMYG+PSE+GAG+CLLI IQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP TVNTGRG EFEGA+IALFHLLATR D VRALREAFY
Sbjct:    1 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFY 235
[Close]
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: S61A1_MOUSE (Protein transport protein Sec61 subunit alpha isoform 1 OS=Mus musculus GN=Sec61a1 PE=2 SV=2)

HSP 1 Score: 437.958 bits (1125), Expect = 3.445e-122
Identity = 218/235 (92.77%), Postives = 227/235 (96.60%), Query Frame = 3 
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            M IKFLEVIKPFC ILPEI KPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGM+IT+GQ+IVYVMTGMYG+PSE+GAG+CLLI IQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP TVNTGRG EFEGA+IALFHLLATR D VRALREAFY
Sbjct:    1 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFY 235
The following BLAST results are available for this feature:
BLAST of FC878404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
S61A1_DANRE2.158e-12494.04Protein transport protein Sec61 subunit alpha-like... [more]
SC61A_HEMAM8.201e-12493.62Protein transport protein Sec61 subunit alpha OS=H... [more]
S61A2_PONAB8.201e-12493.62Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_BOVVA1.071e-12393.19Protein transport protein Sec61 subunit alpha OS=B... [more]
S61A2_DANRE2.386e-12392.34Protein transport protein Sec61 subunit alpha-like... [more]
SC61A_BORSA9.067e-12392.77Protein transport protein Sec61 subunit alpha OS=B... [more]
S61A1_BOVIN1.184e-12293.62Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_RAT3.445e-12292.77Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_PONAB3.445e-12292.77Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_MOUSE3.445e-12292.77Protein transport protein Sec61 subunit alpha isof... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA49BF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878404 ID=FC878404; Name=FC878404; organism=Citrus clementina; type=EST; length=878bp
CGTGACGTGACGTTGTGGACGTGTCATTTGTAGACGGCTCGCTGGCCGCT
TTGCGCACGTTCATTTTCCTAAAAGTCCACTTGGAGTGGTACTAATGAAC
AAAAGTTGAATGGTTTCAGTCGGATTATTAATTTAATTTCATAGTTAGGA
TAGTTAAATCTCAGTAAACCAAAATGGGAATCAAATTCCTGGAAGTTATA
AAGCCTTTCTGCAGCATATTGCCAGAAATCGCGAAACCAGAAAGAAAGAT
CCAATTCAGAGAGAAAGTATTATGGACTGCCATCACTCTGTTCATTTTCT
TAGTATGCTGTCAGATTCCTCTGTTTGGTATCATGTCCTCGGACAGTGCG
GATCCCTTCTACTGGATCCGTGTGATCTTAGCCTCCAACAGAGGAACGCT
CATGGAGCTCGGTATCTCCCCCATCGTCACCTCGGGTCTGATCATGCAGC
TGTTGGCTGGTGCCAAGATCATTGAGGTCGGCGACACACCAAAAGACAGG
GCTTTGTTTAACGGCGCTCAAAAGTTGTTCGGCATGGTGATCACTGTGGG
TCAGGCCATAGTGTACGTCATGACTGGCATGTATGGAGAGCCCTCGGAGA
TCGGAGCCGGTGTCTGCCTGCTCATCATCATCCAGCTGTTTGTCGCCGGA
TTAATTGTCTTGCTACTTGACGAGCTTTTGCAAAAGGGCTACGGTCTCGG
CTCCGGTATCTCGCTGTTCATTGCGACAAATATCTGCGAGACGATCGTCT
GGAAGGCGTTCTCACCTGCCACCGTCAACACTGGTCGCGGAACAGAATTC
GAAGGAGCAGTGATAGCCCTGTTCCACCTCCTGGCGACTAGGCCGGACAA
TGTGCGCGCCCTGCGAGAGGCCTTCTAC
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