FC878404

Overview
NameFC878404
Unique NameFC878404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length878
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: S61A1_HUMAN (Protein transport protein Sec61 subunit alpha isoform 1 OS=Homo sapiens GN=SEC61A1 PE=1 SV=2)

HSP 1 Score: 437.958 bits (1125), Expect = 3.445e-122
Identity = 218/235 (92.77%), Postives = 227/235 (96.60%), Query Frame = 3
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            M IKFLEVIKPFC ILPEI KPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGM+IT+GQ+IVYVMTGMYG+PSE+GAG+CLLI IQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP TVNTGRG EFEGA+IALFHLLATR D VRALREAFY
Sbjct:    1 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFY 235          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: S61A1_CANFA (Protein transport protein Sec61 subunit alpha isoform 1 OS=Canis familiaris GN=SEC61A1 PE=1 SV=3)

HSP 1 Score: 437.958 bits (1125), Expect = 3.445e-122
Identity = 218/235 (92.77%), Postives = 227/235 (96.60%), Query Frame = 3
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            M IKFLEVIKPFC ILPEI KPERKIQF+EKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGM+IT+GQ+IVYVMTGMYG+PSE+GAG+CLLI IQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP TVNTGRG EFEGA+IALFHLLATR D VRALREAFY
Sbjct:    1 MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFY 235          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SC61A_HALRO (Protein transport protein Sec61 subunit alpha OS=Halocynthia roretzi PE=2 SV=1)

HSP 1 Score: 436.417 bits (1121), Expect = 1.002e-121
Identity = 214/235 (91.06%), Postives = 229/235 (97.45%), Query Frame = 3
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            MG KFLEVIKPFC ILPEI KP+RKIQFREKVLWTAITLFIFLVCCQIPLFGIMSS+SADPFYW+RVI+ASNRGTLMELGI+PIVTSGLIMQLLAGAK+IEVGDTPKDRALFNGAQKLFGM+IT+GQA+VYVMTGMYG+PS++GAG+CLLIIIQLF+A LIVLLLDELLQKGYGLGSGISLFIATNICETIVWK+FSPATVNTGRGTEFEGAVIALFHLLATR D VRALREAFY
Sbjct:    1 MGFKFLEVIKPFCIILPEIEKPQRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSESADPFYWMRVIMASNRGTLMELGITPIVTSGLIMQLLAGAKLIEVGDTPKDRALFNGAQKLFGMIITIGQAVVYVMTGMYGDPSDMGAGICLLIIIQLFIASLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKSFSPATVNTGRGTEFEGAVIALFHLLATRSDKVRALREAFY 235          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SC61A_DICDI (Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 3.469e-98
Identity = 171/236 (72.46%), Postives = 206/236 (87.29%), Query Frame = 3
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK-DRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            MG +FL+++KPF S++PE+ +P+RKI FREKVLWTAI LFIFLVC QIPL+GI S+DS+DPFYW +VI+ASNRGTLMELGISPIVTSG++MQLLAGAK+IE+  + K DR LF+ AQKLFGM+I VGQ + Y+ +G YG+P+ +G G C LI++QLF AG+IV+LLDELLQKGYG+GSGISLFIATNICETIVWK FSP TV+ G+GTEFEGAVIALFHLL TR D VRAL+EAFY
Sbjct:    1 MGFRFLDIVKPFTSLVPEVGQPDRKIPFREKVLWTAICLFIFLVCSQIPLYGIRSTDSSDPFYWAKVIMASNRGTLMELGISPIVTSGMVMQLLAGAKLIEIDQSVKADRDLFSAAQKLFGMLICVGQGVAYIWSGSYGDPAVLGFGNCFLIVLQLFFAGIIVMLLDELLQKGYGIGSGISLFIATNICETIVWKTFSPTTVSVGKGTEFEGAVIALFHLLLTRNDKVRALKEAFY 236          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SC61A_PYRSA (Protein transport protein Sec61 subunit alpha OS=Pyrenomonas salina PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 2.663e-90
Identity = 153/235 (65.11%), Postives = 202/235 (85.96%), Query Frame = 3
Query:  177 GIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGD-TPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            G++FL ++KPF   LPE++   +KI   EK+LWT+I +F++LVCCQIPL+GI ++ S+DPFYW+RVILASN+GTLMELGISPIVTSGL+MQLLAG+KII+V   T +D+ LF GAQKL G++IT+G+++ YV++GMYG+  ++GAG  +LII+QLF +G+IV+ LDELLQKGYG+GS ISLFIATN+CE+IVWK+FSP T+NTGRGTEFEGA++ALF L+ T+ D VRAL+EAFY
Sbjct:    5 GVRFLTLVKPFMFALPEVSSATKKIPVNEKLLWTSIVVFLYLVCCQIPLYGITNTKSSDPFYWMRVILASNKGTLMELGISPIVTSGLVMQLLAGSKIIDVDQGTKEDKTLFQGAQKLLGILITIGESVAYVLSGMYGDVKDLGAGNAILIIVQLFTSGIIVICLDELLQKGYGIGSAISLFIATNVCESIVWKSFSPTTINTGRGTEFEGALVALFQLMITKTDKVRALQEAFY 239          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SC61A_NEUCR (Protein transport protein SEC61 subunit alpha OS=Neurospora crassa GN=sec-61 PE=3 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.512e-85
Identity = 148/234 (63.25%), Postives = 195/234 (83.33%), Query Frame = 3
Query:  180 IKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            ++FL+++KPF   LPE+ +PE KI F +K++WT +TL IFLV  Q+PL+GI+SSD++DP YW+R+++ASNRGTLMELGI+PI++SG++ QLLAG  +I+V  D   DR L+  AQKLF +++++G A VYV TG+YG PS++GAG+  L+I+QL VAG+IV+LLDELLQKGYGLGSGISLFIATNICE+I+WKAFSP ++NTGRG E+EGAVIALFHLL T  +  RAL EAFY
Sbjct:    4 LRFLDLVKPFVPFLPEVQQPETKIPFNQKLMWTGLTLLIFLVMSQMPLYGIVSSDTSDPLYWLRMMMASNRGTLMELGITPIISSGMVFQLLAGTHMIDVNLDLKADRELYQTAQKLFAVILSIGTATVYVFTGLYGPPSDLGAGIVFLLILQLVVAGMIVILLDELLQKGYGLGSGISLFIATNICESIMWKAFSPTSINTGRGPEYEGAVIALFHLLMTWDNKQRALYEAFY 237          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SC61A_YARLI (Protein transport protein SEC61 subunit alpha OS=Yarrowia lipolytica GN=SEC61 PE=3 SV=2)

HSP 1 Score: 314.694 bits (805), Expect = 4.399e-85
Identity = 148/234 (63.25%), Postives = 189/234 (80.77%), Query Frame = 3
Query:  177 GIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAF 875
            G++FL+++KPF   LPE+  PERK+ F +K++WTA+TL IFLV  +IPL+GI SSD +D  YW+R++LASNRG+LMELGI+PIV+SG++ QLL G ++IEV  D   DR L+  AQKLF +++++GQA VYV+TGMYG P ++G GVCLL+I QL +A L+V+LLDELLQKGYGLGSGISLFIATNICE I WKAF+P TVN GRG EFEGA++A  HLL TR D  RA+ EAF
Sbjct:    3 GVRFLDLVKPFTPFLPEVQAPERKVPFNQKIMWTAVTLMIFLVMSEIPLYGINSSDKSDALYWLRMMLASNRGSLMELGITPIVSSGMVFQLLGGTQLIEVNMDLKSDRELYQTAQKLFAIILSLGQATVYVLTGMYGPPKDLGVGVCLLLIFQLVLAALVVILLDELLQKGYGLGSGISLFIATNICEQIFWKAFAPTTVNKGRGYEFEGAIVAFVHLLFTRKDKKRAIIEAF 236          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SC61A_HANAN (Protein transport protein SEC61 subunit alpha OS=Hansenula anomala GN=SEC61 PE=3 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 7.504e-85
Identity = 147/233 (63.09%), Postives = 192/233 (82.40%), Query Frame = 3
Query:  183 KFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            + L+++KP    LPE+  PERK+ F +K++WT +TL IFLV  +IPL+GI+SS+S+DP +W+R++LASNRGTLMELGISPIV+SG++ QLL G ++++V  ++  DR  F  AQKLF +++++GQA VYV+TG+YG PS++G GVCLL+I+QL  AG+IV+LLDELLQKGYGLGSGISLF+ATNICE I WKAF+P TVN GRG EFEGAV+ALFHLL+ R D  RAL EAFY
Sbjct:    5 RVLDLVKPLTGYLPEVIAPERKVPFNQKLMWTGVTLLIFLVMSEIPLYGIVSSESSDPLFWLRMMLASNRGTLMELGISPIVSSGMVFQLLQGTQLLDVNLESKTDRETFQTAQKLFAILLSIGQATVYVLTGIYGRPSDLGVGVCLLLILQLVFAGIIVILLDELLQKGYGLGSGISLFMATNICEQIFWKAFAPTTVNNGRGDEFEGAVVALFHLLSVRKDKRRALVEAFY 237          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SC61A_DEBHA (Protein transport protein SEC61 subunit alpha OS=Debaryomyces hansenii GN=SEC61 PE=3 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 7.504e-85
Identity = 147/235 (62.55%), Postives = 189/235 (80.43%), Query Frame = 3
Query:  177 GIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK-DRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            G + L+++KPF   +PE+  PERK+ F+++++WT +TL IFLV  +IPL+GI SSD +DP YW+R++LASNRGTLMELGISPIV++G++ QLL G K+I V  + K DR  F  AQKLF +++ VGQA VYV+TGMYG PS +G GVCLL+++QL  AG++V+LLDELLQKGYGLGSGISLF ATN+CE + WKAF+P T N G+GTEFEGAV+ALFHLL +R D  RAL EAFY
Sbjct:    3 GFRVLDLVKPFTPFMPEVIAPERKVAFQQRLMWTGVTLLIFLVMSEIPLYGIASSDGSDPLYWLRMMLASNRGTLMELGISPIVSAGMVFQLLQGTKLITVDMSNKNDRDQFQTAQKLFAILLAVGQATVYVLTGMYGPPSSLGTGVCLLLVLQLVFAGIVVILLDELLQKGYGLGSGISLFTATNVCEQVFWKAFAPTTSNIGKGTEFEGAVVALFHLLGSRKDKKRALLEAFY 237          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SC61A_CANAL (Protein transport protein SEC61 subunit alpha OS=Candida albicans GN=SEC61 PE=3 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 1.014e-81
Identity = 146/235 (62.13%), Postives = 184/235 (78.30%), Query Frame = 3
Query:  177 GIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK-DRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            G + L+++KPF   LPE+  PERK+QF+++V+WT ITL IFLV  +IPL+GI SSDS+DP +W+R++LASNRGTLMELGISPIV+SG++ QLL G KII V    K DR  F  AQKL  +++ VGQA VYV+TGMYG PS +G GVC L+I+QL  A  IV+LLDELLQKGYGLGSG+SLF ATN CE + WKAF+P T  + +GTEF+GAV+A+FHLL +R D  RAL E+FY
Sbjct:    3 GFRVLDLVKPFSPFLPEVIAPERKVQFQQRVMWTIITLLIFLVMSEIPLYGIASSDSSDPLFWLRMMLASNRGTLMELGISPIVSSGMLFQLLQGTKIIHVDMQNKNDRETFQTAQKLLAILLAVGQATVYVLTGMYGPPSSLGVGVCSLLILQLVFASTIVILLDELLQKGYGLGSGVSLFTATNTCEQVFWKAFAPTTSTSAKGTEFDGAVVAMFHLLGSRKDKKRALIESFY 237          
The following BLAST results are available for this feature:
BLAST of FC878404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
S61A1_HUMAN3.445e-12292.77Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_CANFA3.445e-12292.77Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_HALRO1.002e-12191.06Protein transport protein Sec61 subunit alpha OS=H... [more]
SC61A_DICDI3.469e-9872.46Protein transport protein Sec61 subunit alpha OS=D... [more]
SC61A_PYRSA2.663e-9065.11Protein transport protein Sec61 subunit alpha OS=P... [more]
SC61A_NEUCR1.512e-8563.25Protein transport protein SEC61 subunit alpha OS=N... [more]
SC61A_YARLI4.399e-8563.25Protein transport protein SEC61 subunit alpha OS=Y... [more]
SC61A_HANAN7.504e-8563.09Protein transport protein SEC61 subunit alpha OS=H... [more]
SC61A_DEBHA7.504e-8562.55Protein transport protein SEC61 subunit alpha OS=D... [more]
SC61A_CANAL1.014e-8162.13Protein transport protein SEC61 subunit alpha OS=C... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA49BF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878404 ID=FC878404; Name=FC878404; organism=Citrus clementina; type=EST; length=878bp
CGTGACGTGACGTTGTGGACGTGTCATTTGTAGACGGCTCGCTGGCCGCT
TTGCGCACGTTCATTTTCCTAAAAGTCCACTTGGAGTGGTACTAATGAAC
AAAAGTTGAATGGTTTCAGTCGGATTATTAATTTAATTTCATAGTTAGGA
TAGTTAAATCTCAGTAAACCAAAATGGGAATCAAATTCCTGGAAGTTATA
AAGCCTTTCTGCAGCATATTGCCAGAAATCGCGAAACCAGAAAGAAAGAT
CCAATTCAGAGAGAAAGTATTATGGACTGCCATCACTCTGTTCATTTTCT
TAGTATGCTGTCAGATTCCTCTGTTTGGTATCATGTCCTCGGACAGTGCG
GATCCCTTCTACTGGATCCGTGTGATCTTAGCCTCCAACAGAGGAACGCT
CATGGAGCTCGGTATCTCCCCCATCGTCACCTCGGGTCTGATCATGCAGC
TGTTGGCTGGTGCCAAGATCATTGAGGTCGGCGACACACCAAAAGACAGG
GCTTTGTTTAACGGCGCTCAAAAGTTGTTCGGCATGGTGATCACTGTGGG
TCAGGCCATAGTGTACGTCATGACTGGCATGTATGGAGAGCCCTCGGAGA
TCGGAGCCGGTGTCTGCCTGCTCATCATCATCCAGCTGTTTGTCGCCGGA
TTAATTGTCTTGCTACTTGACGAGCTTTTGCAAAAGGGCTACGGTCTCGG
CTCCGGTATCTCGCTGTTCATTGCGACAAATATCTGCGAGACGATCGTCT
GGAAGGCGTTCTCACCTGCCACCGTCAACACTGGTCGCGGAACAGAATTC
GAAGGAGCAGTGATAGCCCTGTTCCACCTCCTGGCGACTAGGCCGGACAA
TGTGCGCGCCCTGCGAGAGGCCTTCTAC
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