FC878404

Overview
NameFC878404
Unique NameFC878404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length878
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SC61A_CANGA (Protein transport protein SEC61 subunit alpha OS=Candida glabrata GN=SEC61 PE=3 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 5.209e-78
Identity = 141/236 (59.75%), Postives = 181/236 (76.69%), Query Frame = 3
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            M  + L + KPF + LPE+  PERK+ + +K++WT ++L IFLV  QIPL+GI+S++++DP YW+R +LASNRGTLMELG+SPI+TS +I Q L G ++++V  D+ +DR L+  AQK+  +++T GQA+V VMTG YG PS++G  + LL+I QL  A  IVLLLDELL KGYGLGSGISLF ATNI E I WKAF+P TVN+GRG EFEGAVIA FHLLA R D  RAL EAFY
Sbjct:    1 MSDRILSLFKPFEAFLPEVISPERKVPYNQKLIWTGVSLLIFLVLGQIPLYGIVSAETSDPLYWLRAMLASNRGTLMELGVSPIITSSMIFQFLQGTQLLQVSLDSKEDRELYQIAQKVCAIILTFGQALVVVMTGNYGSPSDLGIAISLLLIFQLMFASFIVLLLDELLTKGYGLGSGISLFTATNIAENIFWKAFAPTTVNSGRGKEFEGAVIAFFHLLAVRKDKKRALVEAFY 236          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SC61A_YEAST (Protein transport protein SEC61 OS=Saccharomyces cerevisiae GN=SEC61 PE=1 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 8.884e-78
Identity = 138/233 (59.23%), Postives = 183/233 (78.54%), Query Frame = 3
Query:  183 KFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            + L++ KPF S LPE+  PERK+ + +K++WT ++L IFL+  QIPL+GI+SS+++DP YW+R +LASNRGTL+ELG+SPI+TS +I Q L G +++++  ++ +DR LF  AQK+  +++ +GQA+V VMTG YG PS++G  +CLL+I QL  A LIV+LLDELL KGYGLGSGISLF ATNI E I W+AF+P TVN+GRG EFEGAVIA FHLLA R D  RAL EAFY
Sbjct:    5 RVLDLFKPFESFLPEVIAPERKVPYNQKLIWTGVSLLIFLILGQIPLYGIVSSETSDPLYWLRAMLASNRGTLLELGVSPIITSSMIFQFLQGTQLLQIRPESKQDRELFQIAQKVCAIILILGQALVVVMTGNYGAPSDLGLPICLLLIFQLMFASLIVMLLDELLSKGYGLGSGISLFTATNIAEQIFWRAFAPTTVNSGRGKEFEGAVIAFFHLLAVRKDKKRALVEAFY 237          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SC61A_KLULA (Protein transport protein SEC61 subunit alpha OS=Kluyveromyces lactis GN=SEC61 PE=3 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.979e-77
Identity = 140/236 (59.32%), Postives = 182/236 (77.12%), Query Frame = 3
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            M  + L++ KPF + LPE+  PER + +++K++WT ++L +FLV  QIPL+GI+SS+++DP YW+R +LASNRGTLMELG+SPI+TS +I Q L G ++++V  +  +DR L+  AQK+F +++T GQAIV V+TG YG+PS++G  + LL+I QL  A   VLLLDELL KGYGLGSGISLF ATNI E I WKAF+P TVN GRG EFEGAVIALFHLLA R D  RAL EAFY
Sbjct:    1 MSGRVLDLFKPFEAYLPEVIAPERPVPYKQKLIWTGVSLLVFLVLGQIPLYGIVSSETSDPLYWLRAMLASNRGTLMELGVSPIITSSMIFQFLQGTQLLQVNMENKQDRELYQIAQKVFAILLTFGQAIVVVLTGNYGKPSDLGLAISLLLIFQLIFASFTVLLLDELLSKGYGLGSGISLFTATNIAEQITWKAFAPTTVNVGRGQEFEGAVIALFHLLAIRKDKKRALVEAFY 236          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SC61A_SCHPO (Protein transport protein sec61 subunit alpha OS=Schizosaccharomyces pombe GN=sec61 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 5.759e-77
Identity = 138/234 (58.97%), Postives = 180/234 (76.92%), Query Frame = 3
Query:  180 IKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            ++FL+++KPF   LPEIA PERK+ F++K+LWT +TL IFLV  Q+PL+GI+SSDS+DP  W+R+ILA+NRGTLMELGISPIVTS +++QLL G+++IEV  +   DR ++   QK   ++I  GQA  YV+TGMYG P ++GAG+CLL+I+QL  A LIVLLLDELLQKGYGLGSGISLFIAT  CE I WKAFSP T +   G +FEGAVI   +++ T  +   AL +AF+
Sbjct:    4 LRFLDLVKPFAPFLPEIAAPERKVPFKQKMLWTGVTLLIFLVMSQVPLYGIVSSDSSDPLLWLRMILAANRGTLMELGISPIVTSSMLVQLLVGSQLIEVNMELKSDREMYQLVQKFLAIIIAFGQATAYVLTGMYGRPQDLGAGICLLLILQLAAASLIVLLLDELLQKGYGLGSGISLFIATINCENIFWKAFSPTTYHIANGVQFEGAVINFVYVMFTWDNKAAALYQAFF 237          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SC61A_ASHGO (Protein transport protein SEC61 subunit alpha OS=Ashbya gossypii GN=SEC61 PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 5.759e-77
Identity = 142/236 (60.17%), Postives = 182/236 (77.12%), Query Frame = 3
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            M  + L++ KPF + LPE+  PERK+ + +K++WTA++L IFLV  QIPL+GI+SS+ +DP  W+R +LASNRGTLMELG+SPI+TS +I Q L G ++++V  ++ +DR LF  AQK+  +V+T+GQAIV V+TG YG  S +G  + LL+I+QL  A  IVLLLDELL KGYGLGSGISLF ATNI E I WKAF+P TVN GRGTEFEGAV+ALFHLL+ R D  RAL EAFY
Sbjct:    1 MSGRLLDLFKPFEAFLPEVIAPERKVPYNQKLIWTAVSLLIFLVLGQIPLYGIVSSEGSDPLQWLRAMLASNRGTLMELGVSPIITSSMIFQFLQGTQLLQVNLESKQDRELFQIAQKVCAIVLTLGQAIVVVLTGNYGSVSNLGIAISLLLILQLVFASFIVLLLDELLIKGYGLGSGISLFTATNIAEQIFWKAFAPTTVNNGRGTEFEGAVVALFHLLSVRKDKKRALVEAFY 236          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SECY_METTH (Preprotein translocase subunit secY OS=Methanobacterium thermoautotrophicum GN=secY PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.197e-35
Identity = 81/217 (37.33%), Postives = 133/217 (61.29%), Query Frame = 3
Query:  192 EVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLAT 839
            E  +P  S+LP++  P  ++ FREK+ WT I L ++    QIPL+G+ S+++ D F   R +LA N G+++ LGI PIV++ +I+QLL G KI+++     +D+A F G QKL  +V T  +A+++V+TG    PS        ++I+QL + G++++ LDE++ K +G GSG+ LFIA  + + I+  AF+P +  T  G    G +    +LL T
Sbjct:    6 EKFEPLFSVLPQVKSPGYRVPFREKLKWTGIILVLYFFLAQIPLYGL-SANAVDQFAQFRAVLAGNFGSILTLGIGPIVSASIILQLLVGGKILKLDLSRHEDKAFFQGLQKLLAIVFTFFEALIFVLTGSLA-PS--APQFVWVLILQLTIGGILIIFLDEVVSK-WGFGSGVGLFIAAGVSQEIIVGAFNPLSAPTQPGVP-AGRITGFLYLLFT 216          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SECY_PYRFU (Preprotein translocase subunit secY OS=Pyrococcus furiosus GN=secY PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.706e-34
Identity = 69/186 (37.10%), Postives = 127/186 (68.28%), Query Frame = 3
Query:  222 PEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPS-EIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPAT 773
            PE+ +P+R++  RE+ +WT + L ++ V  +IP++GI      D F ++RV+LA   G+++ LGI PIVT+G+I+QLL G++II++    P+DR  +   Q++F + +   +A V+++ G +G    ++   + +L+I+QL + G+++++LDEL+ K +G+GSGISLFIA  + +TI+ ++ +P T
Sbjct:   15 PEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGIPERIQ-DYFQFLRVVLAGRNGSILTLGIGPIVTAGIILQLLVGSEIIKLDLANPEDRRFYQALQRVFSVFMCFFEAAVWILGGAFGRVGVDVTYAIAVLMILQLAMGGIVLIILDELVSK-WGIGSGISLFIAAGVSQTILTRSLNPLT 198          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SECY_SULAC (Preprotein translocase subunit secY OS=Sulfolobus acidocaldarius GN=secY PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.908e-33
Identity = 80/230 (34.78%), Postives = 136/230 (59.13%), Query Frame = 3
Query:  186 FLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDS-ADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKD-RALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPDNVRALRE 869
            F++ +      LP ++KP+ K     K+LWT I L ++L+   IPL+G+ SS+S    F   ++I AS++GTL +LGI P++TSGLIMQ+L G+K+I V  T ++ ++ F  A+K   ++  + ++ ++   G     +     + +++++QL +A  I+LLLDE++QKG+GLGSG+SLFI   I + I W  F   +V +      +   +  F LL +   + R L+E
Sbjct:    3 FMDFLAKMGENLPAVSKPKDKPTLTRKLLWTFIGLIVYLLMASIPLYGVTSSNSFLSNFLAQQIIFASSQGTLAQLGIGPVITSGLIMQILVGSKLINVDLTTQEGKSKFTQAEKALALIFIIVESSLF---GYVFTRATSNILLPIIVVVQLIIASYIILLLDEMIQKGWGLGSGVSLFIMAGIMKVIFWNMFGIVSVQS------QNLPVGFFPLLVSYITSGRNLQE 223          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SECY_METVA (Preprotein translocase subunit secY OS=Methanococcus vannielii GN=secY PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.485e-32
Identity = 76/213 (35.68%), Postives = 131/213 (61.50%), Query Frame = 3
Query:  198 IKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETI----------VWKAFSPATVNTGRGTEFE 803
            IKP   ++PE+ +P + + F+EK+ WT + L ++ +   I ++ +  ++    F + + + AS  GTL+ LGI PIVT+G+IMQLL G+++I +    P +RALF G QKLFG+ +   +A+++V  G +G    + + + L++++QL +  ++V+ LDE++ + YG+GSGI LFIA  + +TI          +WK FS  +V +  G  FE
Sbjct:    3 IKPILELIPEVKRPLKGVSFKEKIQWTGLVLILYFILGTIDIY-MGGAEMPAMFAFWQTVTASKMGTLITLGIGPIVTAGIIMQLLVGSELISLDLSKPMNRALFQGLQKLFGIFLCFLEAVMFVGAGAFG---VVNSTLALILVLQLALGAILVIYLDEIVSR-YGIGSGIGLFIAAGVAQTIFVGAFGAEGYLWKFFSAMSVGS-LGIAFE 209          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SECY_PYRAB (Preprotein translocase subunit secY OS=Pyrococcus abyssi GN=secY PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.308e-32
Identity = 68/186 (36.56%), Postives = 123/186 (66.13%), Query Frame = 3
Query:  222 PEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPS-EIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPAT 773
            PE+ +P++ +  +EK +WT + L ++ V  +IP++GI      D F ++RV+LA   G+++ LGI PIVT+G+I+QLL G++II++    P+DR  +   Q++F + +   +A ++V+ G +G    ++   +  L+I+QL   G+I+++LDEL+ K +G+GSGISLFIA  + + I+ ++ +P T
Sbjct:   15 PEVERPKKHVPLKEKFMWTGLALILYYVLAEIPVYGIPERIQ-DYFQFLRVVLAGRNGSILTLGIGPIVTAGIILQLLVGSEIIKLDLANPEDRRFYQALQRVFSVFMCFLEAAIWVLGGAFGRVGVDVTYAIAALMILQLAFGGIILIVLDELVSK-WGIGSGISLFIAAGVSQRILTRSLNPLT 198          
The following BLAST results are available for this feature:
BLAST of FC878404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SC61A_CANGA5.209e-7859.75Protein transport protein SEC61 subunit alpha OS=C... [more]
SC61A_YEAST8.884e-7859.23Protein transport protein SEC61 OS=Saccharomyces c... [more]
SC61A_KLULA1.979e-7759.32Protein transport protein SEC61 subunit alpha OS=K... [more]
SC61A_SCHPO5.759e-7758.97Protein transport protein sec61 subunit alpha OS=S... [more]
SC61A_ASHGO5.759e-7760.17Protein transport protein SEC61 subunit alpha OS=A... [more]
SECY_METTH3.197e-3537.33Preprotein translocase subunit secY OS=Methanobact... [more]
SECY_PYRFU2.706e-3437.10Preprotein translocase subunit secY OS=Pyrococcus ... [more]
SECY_SULAC3.908e-3334.78Preprotein translocase subunit secY OS=Sulfolobus ... [more]
SECY_METVA1.485e-3235.68Preprotein translocase subunit secY OS=Methanococc... [more]
SECY_PYRAB3.308e-3236.56Preprotein translocase subunit secY OS=Pyrococcus ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA49BF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878404 ID=FC878404; Name=FC878404; organism=Citrus clementina; type=EST; length=878bp
CGTGACGTGACGTTGTGGACGTGTCATTTGTAGACGGCTCGCTGGCCGCT
TTGCGCACGTTCATTTTCCTAAAAGTCCACTTGGAGTGGTACTAATGAAC
AAAAGTTGAATGGTTTCAGTCGGATTATTAATTTAATTTCATAGTTAGGA
TAGTTAAATCTCAGTAAACCAAAATGGGAATCAAATTCCTGGAAGTTATA
AAGCCTTTCTGCAGCATATTGCCAGAAATCGCGAAACCAGAAAGAAAGAT
CCAATTCAGAGAGAAAGTATTATGGACTGCCATCACTCTGTTCATTTTCT
TAGTATGCTGTCAGATTCCTCTGTTTGGTATCATGTCCTCGGACAGTGCG
GATCCCTTCTACTGGATCCGTGTGATCTTAGCCTCCAACAGAGGAACGCT
CATGGAGCTCGGTATCTCCCCCATCGTCACCTCGGGTCTGATCATGCAGC
TGTTGGCTGGTGCCAAGATCATTGAGGTCGGCGACACACCAAAAGACAGG
GCTTTGTTTAACGGCGCTCAAAAGTTGTTCGGCATGGTGATCACTGTGGG
TCAGGCCATAGTGTACGTCATGACTGGCATGTATGGAGAGCCCTCGGAGA
TCGGAGCCGGTGTCTGCCTGCTCATCATCATCCAGCTGTTTGTCGCCGGA
TTAATTGTCTTGCTACTTGACGAGCTTTTGCAAAAGGGCTACGGTCTCGG
CTCCGGTATCTCGCTGTTCATTGCGACAAATATCTGCGAGACGATCGTCT
GGAAGGCGTTCTCACCTGCCACCGTCAACACTGGTCGCGGAACAGAATTC
GAAGGAGCAGTGATAGCCCTGTTCCACCTCCTGGCGACTAGGCCGGACAA
TGTGCGCGCCCTGCGAGAGGCCTTCTAC
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