FC878404

Overview
NameFC878404
Unique NameFC878404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length878
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10528 contig Ccv1_Contig10528:1..878. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SECY_AERPE (Preprotein translocase subunit secY OS=Aeropyrum pernix GN=secY PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 3.308e-32
Identity = 76/199 (38.19%), Postives = 115/199 (57.79%), Query Frame = 3
Query:  174 MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMY--GEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAF 761
            MG+  ++V+       P + KPERK     ++ WT + L ++ +   IPL+GI   +        R+I AS+ GTLMELGI PIVT+ LI+Q+L GAKII++    P+ R  F  AQK+  +     +A+ + + G Y  G   E G     L+ +QLF+  L+V+  DE++QKG+G+GS ISLFI   + + +VW  F
Sbjct:    1 MGV--IDVLAAVGERFPAVRKPERKPTLYRRLAWTGVILVLYFIMSNIPLYGIPPQNIGGQVDLQRIIFASSAGTLMELGIGPIVTASLIIQVLVGAKIIKLDLADPEGRRKFTSAQKVLALAFAALEAVAFTVGGRYWVGTAIEPGPLDYALVSLQLFLGALLVIYFDEVMQKGWGIGSAISLFILAGVAQGVVWSIF 197          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SECY_PYRHO (Preprotein translocase subunit secY OS=Pyrococcus horikoshii GN=secY PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.321e-32
Identity = 68/186 (36.56%), Postives = 123/186 (66.13%), Query Frame = 3
Query:  222 PEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPS-EIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPAT 773
            PE+ +P++ +  +EK +WT + L ++ V  +IP++GI      D F ++RV+LA   G+++ LGI PIVT+G+I+QLL G+++I +    P+DR  +   Q++F + +   +A ++V+ G +G    ++   +  L+IIQL + G+I+++LDEL+ K +G+GSGISLFIA  + + I+ ++ +P T
Sbjct:   15 PEVERPKKHVPLKEKFVWTGLALVLYYVLAEIPVYGIPKKIQ-DYFQFLRVVLAGRNGSILTLGIGPIVTAGIILQLLVGSELIRLDLANPEDRRFYQALQRVFSVFMCFFEAAIWVLGGAFGRVGVDVTYTIATLMIIQLALGGIILIVLDELVSK-WGIGSGISLFIAAGVSQRILTRSLNPLT 198          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SECY_SULSO (Preprotein translocase subunit secY OS=Sulfolobus solfataricus GN=secY PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.643e-32
Identity = 80/227 (35.24%), Postives = 129/227 (56.83%), Query Frame = 3
Query:  180 IKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCL---LIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRPD 848
            + F++ +      LP + KP+ K    +K++W+ + + I+L+    PL+GI S+         ++I AS  GTL +LGI PI+T+GLIMQ+LAG+K+I +  + P DR  F  AQK    +  + ++ ++    +    + I A +     ++I QL VA  ++LLLDEL+QKG+GLGSG+SLFI   + + + W  F  A+V++       G   ALF  LA+  D
Sbjct:    1 MSFIDSLATLGQYLPAVTKPKEKPSLGQKLVWSLVAVIIYLIMASTPLYGITSASFFKNLILEQIIFASTTGTLAQLGIGPIITAGLIMQILAGSKLISIDLNDPDDRVKFTEAQKGLAFIFILVESALFGYV-LARTSTTINASILFIAGIVIAQLIVATYLILLLDELIQKGWGLGSGVSLFILAGVMKIMFWDMFGIASVSSQNLP--IGFFPALFTALASHSD 224          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: YGMH_SCHPO (Uncharacterized protein C19G7.17 OS=Schizosaccharomyces pombe GN=SPBC19G7.17 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.257e-31
Identity = 75/237 (31.65%), Postives = 134/237 (56.54%), Query Frame = 3
Query:  177 GIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFS--PATVNTGRGTEFEGAVIALFHLLATRPDNVRALREAFY 878
            G +F+  IKP  S+LPE+  P+  ++  EK+ W A  + ++ +   IP++G   +D+ DP    RV+  S+   LM  G++PI  S  ++Q+LA  K I V  +   DR LF  AQK+   ++ +  A+ YV +G YG  S++G    +++I+Q+F+ G++ + L E+++KG+GLGSG  L + ++I   I+W   S     VN    ++++GA++     L +  +   +LR   +
Sbjct:    3 GARFINFIKPLSSLLPEVEGPKTHLELVEKLGWMAGCVVVYQILSIIPVYGAEKTDTLDPINNFRVLDGSSASGLMITGLAPIYLSSFLLQILASKKKIAVNFNLIIDRVLFQNAQKVVSALLYLILAVTYVSSGYYGSFSDLGIFRFIMLILQIFLPGIVCIYLCEIIEKGHGLGSGPVLLLGSHILGNIMWDVLSLHRYPVNESGDSQYQGALVGFAFNLFSFKNKFSSLRSILF 239          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SECY_METJA (Preprotein translocase subunit secY OS=Methanocaldococcus jannaschii GN=secY PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 4.471e-29
Identity = 73/189 (38.62%), Postives = 116/189 (61.38%), Query Frame = 3
Query:  204 PFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSP 767
            P    +PE+  P ++I F+EK+ WT I L ++ +   I ++   +   A   +W + I AS  GTL+ LGI PIVT+G+IMQLL G+ II++    P++RALF G QKL  +++   +A+++V  G +G  + +   +  L+IIQ+    +I++ LDE++ K YG+GSGI LFIA  + +TI   A  P
Sbjct:    6 PILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIPAIFEFW-QTITASRIGTLITLGIGPIVTAGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFGILTPL---LAFLVIIQIAFGSIILIYLDEIVSK-YGIGSGIGLFIAAGVSQTIFVGALGP 189          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SECY_ARCFU (Preprotein translocase subunit secY OS=Archaeoglobus fulgidus GN=secY PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.219e-28
Identity = 69/200 (34.50%), Postives = 118/200 (59.00%), Query Frame = 3
Query:  189 LEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDT-PKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAG-------VCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFS 764
            +  ++P+   +P + +P+  + FREK  WTA  L ++ +   +P+FG+ S +S D F   R + A + G+++ LGI PIVT+ +I+QLL GA II++  T P+DRA +   Q+    V+   +AI  +  G+      + A        +  LI IQLF+ G++++ +DE++ K +G+GSG+SLFI   I ++IV   F+
Sbjct:    5 IRALQPYFERIPSVERPKGHVHFREKFGWTAAILLLYFILSNVPVFGL-SPESIDIFAAYRALFAGSTGSIIALGIGPIVTASIILQLLVGAGIIKLDLTNPEDRAAYQDFQRFLVFVMIAVEAIPQIAGGLLKPDLNLAAQLGVSPGIISFLIFIQLFIGGVLIVYMDEVVSK-WGIGSGVSLFILAGIAQSIVVGLFN 202          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SSH1_YEAST (Sec sixty-one protein homolog OS=Saccharomyces cerevisiae GN=SSH1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.590e-26
Identity = 74/228 (32.46%), Postives = 120/228 (52.63%), Query Frame = 3
Query:  177 GIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSA---DPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRG--TEFEGAVIALFHLLATR 842
            G + ++++KP   ILPE+  P  K+ F +K+++T     I+L   Q PL G+  + +    DP Y++R +      TL+E G+ P ++SGLI+QLLAG K+I+V      DR LF    K+F +V  V    +++  G +G+  ++      LI  QL  AG+   LL E++ KG+G  SG  +     I   +V   F  + +  G    TE +GA+I L   L ++
Sbjct:    3 GFRLIDIVKPILPILPEVELPFEKLPFDDKIVYTIFAGLIYLFA-QFPLVGLPKATTPNVNDPIYFLRGVFGCEPRTLLEFGLFPNISSGLILQLLAGLKVIKVNFKIQSDRELFQSLTKVFAIVQYVILTNIFIFAGYFGD--DLSVVQIGLINFQLVGAGIFTTLLAEVIDKGFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSK 227          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SECY_HALSA (Preprotein translocase subunit secY OS=Halobacterium salinarium GN=secY PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.543e-26
Identity = 66/196 (33.67%), Postives = 114/196 (58.16%), Query Frame = 3
Query:  192 EVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKI--IEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGA--------GVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIV 749
            E   P  + +P + +PE  + FR K+ WT   L ++     +PL+GI ++ + D F   R +LA  +GT+++LGI PIVT+ +++QLL GA +  ++  + P+D+A++ G QK    V+ V      V  G + +PS+  A        GV +LI  Q+   G+++L +DE++ K +G+GSGI LFI   + +++V
Sbjct:    5 EAAAPVLTRMPAVERPEGHVPFRRKMYWTGGVLVLYFFLTNVPLWGIQTAGN-DFFGQFRSLLAGGQGTVLQLGIGPIVTASIVLQLLGGANLLGLDTDNDPRDQAIYQGLQKFLVGVMVVLTGAPMVFLGNFLQPSQQLAQSMPGGAFGVEVLIFAQIAAGGILLLFMDEVISK-WGVGSGIGLFIVAGVSQSLV 198          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SECY_HALMA (Preprotein translocase subunit secY OS=Haloarcula marismortui GN=secY PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.031e-25
Identity = 66/196 (33.67%), Postives = 110/196 (56.12%), Query Frame = 3
Query:  192 EVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG--DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMY-----GEPSEIG---AGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIV 749
            +  +P    +P + +PE  + F+ K+ WT   L ++     + LFG+    S   F     ILAS +G++M+LGI PIVT+ +++QLL GA ++ +   D P+D+ L+ G QKL  +V+     +  V  G +        + +G   AGV  LI  Q+FV G+++L +DE++ K +G+GSGI LFI   + + +V
Sbjct:    5 DTAEPLLVRMPAVQRPEGHVPFKRKLTWTGGVLLLYFFLTNVKLFGLDIDASQQVFGRFSSILASGQGSIMQLGIGPIVTASIVLQLLGGADLLGLNTQDDPRDQILYQGLQKLLVLVMICLTGLPMVFAGGFLPADTAVANSLGIGTAGVQWLIFAQMFVGGVLILFMDEVISK-WGVGSGIGLFIVAGVSQRLV 199          
BLAST of FC878404 vs. ExPASy Swiss-Prot
Match: SECY_HALVO (Preprotein translocase subunit secY OS=Halobacterium volcanii GN=secY PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.758e-25
Identity = 66/201 (32.84%), Postives = 113/201 (56.22%), Query Frame = 3
Query:  192 EVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKI--IEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGEPSEIGA--------GVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFS 764
            +  +P  S +P +A+PE  + FR K+ WT   L ++     + LFG+ ++ + D F   R ILA  +G++++LGI PIVT+ +++QLL GA +  ++  + P+D+ L+ G QKL   V+     +  V  G +    +  A        GV  LI  Q+ V G+++L +DE++ K +G+GSG+ LFI   + + +V   FS
Sbjct:    5 DAAEPVLSRMPAVARPEGHVPFRRKLGWTGGILVLYFFLTNVTLFGLDAATANDLFGQFRSILAGQQGSVLQLGIGPIVTASIVLQLLGGADLLGLDTDNNPRDQVLYQGLQKLLVGVMICLTGLPMVFAGNFLPADQAVATSLGIGTVGVKGLIFAQIAVGGVLILFMDEIVSK-WGVGSGVGLFIIAGVSQQLVGGLFS 204          
The following BLAST results are available for this feature:
BLAST of FC878404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SECY_AERPE3.308e-3238.19Preprotein translocase subunit secY OS=Aeropyrum p... [more]
SECY_PYRHO4.321e-3236.56Preprotein translocase subunit secY OS=Pyrococcus ... [more]
SECY_SULSO5.643e-3235.24Preprotein translocase subunit secY OS=Sulfolobus ... [more]
YGMH_SCHPO1.257e-3131.65Uncharacterized protein C19G7.17 OS=Schizosaccharo... [more]
SECY_METJA4.471e-2938.62Preprotein translocase subunit secY OS=Methanocald... [more]
SECY_ARCFU2.219e-2834.50Preprotein translocase subunit secY OS=Archaeoglob... [more]
SSH1_YEAST1.590e-2632.46Sec sixty-one protein homolog OS=Saccharomyces cer... [more]
SECY_HALSA3.543e-2633.67Preprotein translocase subunit secY OS=Halobacteri... [more]
SECY_HALMA1.031e-2533.67Preprotein translocase subunit secY OS=Haloarcula ... [more]
SECY_HALVO1.758e-2532.84Preprotein translocase subunit secY OS=Halobacteri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA49BF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878404 ID=FC878404; Name=FC878404; organism=Citrus clementina; type=EST; length=878bp
CGTGACGTGACGTTGTGGACGTGTCATTTGTAGACGGCTCGCTGGCCGCT
TTGCGCACGTTCATTTTCCTAAAAGTCCACTTGGAGTGGTACTAATGAAC
AAAAGTTGAATGGTTTCAGTCGGATTATTAATTTAATTTCATAGTTAGGA
TAGTTAAATCTCAGTAAACCAAAATGGGAATCAAATTCCTGGAAGTTATA
AAGCCTTTCTGCAGCATATTGCCAGAAATCGCGAAACCAGAAAGAAAGAT
CCAATTCAGAGAGAAAGTATTATGGACTGCCATCACTCTGTTCATTTTCT
TAGTATGCTGTCAGATTCCTCTGTTTGGTATCATGTCCTCGGACAGTGCG
GATCCCTTCTACTGGATCCGTGTGATCTTAGCCTCCAACAGAGGAACGCT
CATGGAGCTCGGTATCTCCCCCATCGTCACCTCGGGTCTGATCATGCAGC
TGTTGGCTGGTGCCAAGATCATTGAGGTCGGCGACACACCAAAAGACAGG
GCTTTGTTTAACGGCGCTCAAAAGTTGTTCGGCATGGTGATCACTGTGGG
TCAGGCCATAGTGTACGTCATGACTGGCATGTATGGAGAGCCCTCGGAGA
TCGGAGCCGGTGTCTGCCTGCTCATCATCATCCAGCTGTTTGTCGCCGGA
TTAATTGTCTTGCTACTTGACGAGCTTTTGCAAAAGGGCTACGGTCTCGG
CTCCGGTATCTCGCTGTTCATTGCGACAAATATCTGCGAGACGATCGTCT
GGAAGGCGTTCTCACCTGCCACCGTCAACACTGGTCGCGGAACAGAATTC
GAAGGAGCAGTGATAGCCCTGTTCCACCTCCTGGCGACTAGGCCGGACAA
TGTGCGCGCCCTGCGAGAGGCCTTCTAC
back to top