FC878411

Overview
NameFC878411
Unique NameFC878411
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length846
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.875e-61
Identity = 113/182 (62.09%), Postives = 136/182 (74.73%), Query Frame = 1
Query:    1 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 546
            STPA++RLMRDFKRLQ+DPP G+SGAP +NNIM WNAVIFG                                  P+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+L+ ENKREY +RV  IVEQSW
Sbjct:    2 STPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFG----------------------------------PEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.875e-61
Identity = 113/182 (62.09%), Postives = 136/182 (74.73%), Query Frame = 1
Query:    1 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 546
            STPA++RLMRDFKRLQ+DPP G+SGAP +NNIM WNAVIFG                                  P+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+L+ ENKREY +RV  IVEQSW
Sbjct:    2 STPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFG----------------------------------PEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.875e-61
Identity = 113/182 (62.09%), Postives = 136/182 (74.73%), Query Frame = 1
Query:    1 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 546
            STPA++RLMRDFKRLQ+DPP G+SGAP +NNIM WNAVIFG                                  P+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+L+ ENKREY +RV  IVEQSW
Sbjct:    2 STPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFG----------------------------------PEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.875e-61
Identity = 113/182 (62.09%), Postives = 136/182 (74.73%), Query Frame = 1
Query:    1 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 546
            STPA++RLMRDFKRLQ+DPP G+SGAP +NNIM WNAVIFG                                  P+ TP++ GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILTSIQSLL +PNPNSPANS+AA+L+ ENKREY +RV  IVEQSW
Sbjct:    2 STPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFG----------------------------------PEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSW 149          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.708e-60
Identity = 109/182 (59.89%), Postives = 138/182 (75.82%), Query Frame = 1
Query:    1 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 546
            +TP+++RLMRDFK+LQ+DPPAG+SGAP ++NI+ W A+IFG                                  P +TP++ GTFKL+L+FTE+YPNKPPTV+F+S+MFHPN+YADGSICLDILQN+WSP YDVAAILTSIQSLL +PNPNSPANS AA+L+ EN+REY +RV++IVEQSW
Sbjct:    2 TTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFG----------------------------------PQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSW 149          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.780e-57
Identity = 112/191 (58.64%), Postives = 131/191 (68.59%), Query Frame = 1
Query:    1 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWTAD*KSNES 573
            STP+KKRL+RDFKRL  DPP GISGAP  +N+M+WNAVIFG                                  P DTP++ GTFKL L F E YPNKPPTV+F+S+MFHPN+YA+G +CLDILQN+WSP YDVAAILTSIQSLL DPNPNSPAN+EAA L+ EN +EY RRV+  VE SW  D +  ES
Sbjct:    2 STPSKKRLIRDFKRLSTDPPGGISGAPCADNLMIWNAVIFG----------------------------------PADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEYVRRVKATVEASWLDDGEMPES 158          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 213.001 bits (541), Expect = 1.700e-54
Identity = 107/182 (58.79%), Postives = 125/182 (68.68%), Query Frame = 1
Query:    1 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 546
            ST A++RLMRDFKR+QQDPPAG+S +P  +N+MLWNAVI G                                  P DTP++ GTFKL L F E YPNKPP V+FVS MFHPN+YA+G +CLDILQN+WSP YDVAAILTSIQSLL DPN  SPAN+EAA+L  ENK+EY RRVR+ VE SW
Sbjct:    2 STTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIG----------------------------------PADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKEYVRRVRKTVEDSW 149          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.788e-54
Identity = 105/182 (57.69%), Postives = 127/182 (69.78%), Query Frame = 1
Query:    1 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 546
            ST AK+RL+RDFKRL  D P GISG+P  +NIM+WNAVIFG                                  P +TP++ G+F+LTL FT+ YPNKPPTVRF+S+MFHPNIYA+G +CLDILQN+WSP YDVAAILTS+QSLL DPNP SPAN +AA+LF EN +EY RRV++ VE SW
Sbjct:    2 STAAKRRLIRDFKRLTSDAPIGISGSPNPDNIMVWNAVIFG----------------------------------PPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYERRVKKTVELSW 149          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.469e-53
Identity = 100/182 (54.95%), Postives = 125/182 (68.68%), Query Frame = 1
Query:    1 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 546
            ST A++RLMRDFKR+Q DPPAG+S +P  +N+M WNAVI G                                  P DTP++ GTF+L +QF E YPNKPP V+F+S+MFHPN+YA+G +CLDILQN+WSP YDVAA+LTSIQSLL DPN  SPAN EA+ L+ +N+REY +RVRE VE+SW
Sbjct:    2 STAARRRLMRDFKRMQTDPPAGVSASPIPDNVMTWNAVIIG----------------------------------PADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSW 149          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.329e-53
Identity = 99/182 (54.40%), Postives = 123/182 (67.58%), Query Frame = 1
Query:    1 STPAKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSW 546
            ST A++RLMRDFKR+Q DPPAG+S +P  +N+M WNAVI G                                  P DTP++ GTF+L +QF E YPNKPP V+F+S MFHPN+YA G +CLDILQN+WSP YDVAA+LTSIQSLL DPN  SPAN EA+ L+ +N++EY +RVRE VE+SW
Sbjct:    2 STAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIG----------------------------------PADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEKSW 149          
The following BLAST results are available for this feature:
BLAST of FC878411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
UBE2B_RABIT1.875e-6162.09Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE1.875e-6162.09Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN1.875e-6162.09Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN1.875e-6162.09Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBC1_CAEEL2.708e-6059.89Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC2_USTMA4.780e-5758.64Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_SCHPO1.700e-5458.79Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC2_CRYNE3.788e-5457.69Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBC2_TRIHA5.469e-5354.95Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_NECHA9.329e-5354.40Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CB06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878411 ID=FC878411; Name=FC878411; organism=Citrus clementina; type=EST; length=846bp
TCAACACCGGCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCCTCCAGCA
AGATCCACCCGCCGGAATCAGCGGGGCCCCTCAAGACAACAACATCATGT
TATGGAACGCCGTTATTTTTGGGTATTTGTTTTAATTAACTTTTGTTTTT
GTCTTGTAACTTTTCTGGTTTATGTTTTGATTTTTGATTTTCTTGTTTGT
TTTTCATTTGGTGATGTTTCGTAGGCCTGATGATACTCCCTGGGACGGAG
GTACGTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCT
CCAACAGTTCGGTTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGA
TGGAAGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCTATATATG
ATGTTGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAAT
CCAAACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAA
ACGAGAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAG
CCGACTAAAAGTCCAATGAAAGCACCAGCCGGTTATGCTGTAGAAATAAA
AGATGAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTAGTGTACTC
CGTAATCAATCTGATTTCAGGTGCATTGTTATTAGAGAATCTCTTCGGAT
TCTTCCTCCCAGATAGCTCTGGTTGAACCTCTTGTTAATTTCTCAACATT
TCCATCTTCTTTTCAACATCTTTCATGTAACTGTAATTTATCTGTAGCAT
TTGTATAGGGGTATTATTGCTGCAGTGAATCAGTGATGTATGTCTT
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