FC878411

Overview
NameFC878411
Unique NameFC878411
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length846
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UB2L6_RAT (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus norvegicus GN=Ube2l6 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.237e-13
Identity = 34/106 (32.08%), Postives = 56/106 (52.83%), Query Frame = 1
Query:  226 PDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 540
            PD  P+    F L + F  +YP KPPT+RF ++++HPNI  DG +CL ++  + W P      +L ++  L+  PN   P   E A L +++   + ++  E   Q
Sbjct:   41 PDQLPYRLKAFGLRIDFPREYPLKPPTLRFTTKIYHPNISEDGLVCLPLISTENWKPYTKAYQVLEALNILVSRPNLEEPVRLELADLLTQDPEMFRKKAEEFTLQ 146          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.227e-13
Identity = 48/171 (28.07%), Postives = 79/171 (46.20%), Query Frame = 1
Query:   22 LMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 525
            L RDF  L+++   GI+  P   ++M W   I G                                    ++ W G  F+LT+ FT +Y   PP V+F++  FHPN+    G  C+D L N  +W+  Y +++IL ++Q +L +P   +P N EAAR+  +++  Y   +R
Sbjct:    9 LHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGL----------------------------------QNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILR 145          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.438e-13
Identity = 40/179 (22.35%), Postives = 82/179 (45.81%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISG-APQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 540
            A KR+ ++ + LQ++ P  +     +++N+++W+A++                                    P+  P++   F+L + F  +YP +PPTV+F +R++HPN+  DG +CL I+ +  W        +L ++  L+  P P  P   E A   +++   +++  +E   Q
Sbjct:    3 ASKRVAKELEDLQKELPKYLRNLCSEEDNVLVWHALLL-----------------------------------PERPPYNLKAFRLCISFPREYPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQPVRLELAEQLTQDPELFDQMAQEFTLQ 146          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC12_CAEEL (NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis elegans GN=ubc-12 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.610e-12
Identity = 38/112 (33.93%), Postives = 64/112 (57.14%), Query Frame = 1
Query:  226 PDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL------QNQWSPIYDVAAILTSIQSLLCD-PNPNSPANSEAARLFSENKREYNRRVREIVEQ 540
            P +  + GG F+  +    +Y N PP V+ +++++HPNI  DGSICL IL      Q  W P  ++  ++  + SL  D  + N   N +AA+++S+N+  +N RVRE + +
Sbjct:   67 PQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESFNHRVREYISR 178          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC84_DROME (Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophila melanogaster GN=Ubc84D PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.036e-11
Identity = 27/107 (25.23%), Postives = 57/107 (53.27%), Query Frame = 1
Query:  226 PDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQS 543
            P+  P++ G F++ + F   YP  PP + F ++++HPN+   G +CL I+  + W P      +L ++ +++ +P P  P  S+ A  F    +++ +   E  +++
Sbjct:   41 PEKAPYNKGAFRIEINFPPQYPFMPPKILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTRTEQVLQALVAIVHNPEPEHPLRSDLAEEFVREHKKFMKTAEEFTKKN 147          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.965e-11
Identity = 38/112 (33.93%), Postives = 56/112 (50.00%), Query Frame = 1
Query:  220 RRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVS----------------------RMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARL 486
            R PD +P++   +KL +    +YP  PP ++FV                       +M HPN+ +  G ICLDILQ +WSP + + + L +I  LL +P P SP N + A L
Sbjct:   49 RGPDQSPFEDALWKLEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANL 160          
The following BLAST results are available for this feature:
BLAST of FC878411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
UB2L6_RAT4.237e-1332.08Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus... [more]
UBE2U_HUMAN7.227e-1328.07Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
UB2L6_BOVIN9.438e-1322.35Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos ta... [more]
UBC12_CAEEL1.610e-1233.93NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis ... [more]
UBC84_DROME3.036e-1125.23Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophi... [more]
UBCX_PICAN3.965e-1133.93Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia a... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CB06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878411 ID=FC878411; Name=FC878411; organism=Citrus clementina; type=EST; length=846bp
TCAACACCGGCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCCTCCAGCA
AGATCCACCCGCCGGAATCAGCGGGGCCCCTCAAGACAACAACATCATGT
TATGGAACGCCGTTATTTTTGGGTATTTGTTTTAATTAACTTTTGTTTTT
GTCTTGTAACTTTTCTGGTTTATGTTTTGATTTTTGATTTTCTTGTTTGT
TTTTCATTTGGTGATGTTTCGTAGGCCTGATGATACTCCCTGGGACGGAG
GTACGTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCT
CCAACAGTTCGGTTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGA
TGGAAGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCTATATATG
ATGTTGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAAT
CCAAACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAA
ACGAGAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAG
CCGACTAAAAGTCCAATGAAAGCACCAGCCGGTTATGCTGTAGAAATAAA
AGATGAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTAGTGTACTC
CGTAATCAATCTGATTTCAGGTGCATTGTTATTAGAGAATCTCTTCGGAT
TCTTCCTCCCAGATAGCTCTGGTTGAACCTCTTGTTAATTTCTCAACATT
TCCATCTTCTTTTCAACATCTTTCATGTAACTGTAATTTATCTGTAGCAT
TTGTATAGGGGTATTATTGCTGCAGTGAATCAGTGATGTATGTCTT
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