FC878411
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UB2L6_RAT (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus norvegicus GN=Ube2l6 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.237e-13 Identity = 34/106 (32.08%), Postives = 56/106 (52.83%), Query Frame = 1 Query: 226 PDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 540 PD P+ F L + F +YP KPPT+RF ++++HPNI DG +CL ++ + W P +L ++ L+ PN P E A L +++ + ++ E Q Sbjct: 41 PDQLPYRLKAFGLRIDFPREYPLKPPTLRFTTKIYHPNISEDGLVCLPLISTENWKPYTKAYQVLEALNILVSRPNLEEPVRLELADLLTQDPEMFRKKAEEFTLQ 146
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 7.227e-13 Identity = 48/171 (28.07%), Postives = 79/171 (46.20%), Query Frame = 1 Query: 22 LMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 525 L RDF L+++ GI+ P ++M W I G ++ W G F+LT+ FT +Y PP V+F++ FHPN+ G C+D L N +W+ Y +++IL ++Q +L +P +P N EAAR+ +++ Y +R Sbjct: 9 LHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGL----------------------------------QNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILR 145
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 9.438e-13 Identity = 40/179 (22.35%), Postives = 82/179 (45.81%), Query Frame = 1 Query: 10 AKKRLMRDFKRLQQDPPAGISG-APQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 540 A KR+ ++ + LQ++ P + +++N+++W+A++ P+ P++ F+L + F +YP +PPTV+F +R++HPN+ DG +CL I+ + W +L ++ L+ P P P E A +++ +++ +E Q Sbjct: 3 ASKRVAKELEDLQKELPKYLRNLCSEEDNVLVWHALLL-----------------------------------PERPPYNLKAFRLCISFPREYPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQPVRLELAEQLTQDPELFDQMAQEFTLQ 146
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC12_CAEEL (NEDD8-conjugating enzyme ubc-12 OS=Caenorhabditis elegans GN=ubc-12 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.610e-12 Identity = 38/112 (33.93%), Postives = 64/112 (57.14%), Query Frame = 1 Query: 226 PDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL------QNQWSPIYDVAAILTSIQSLLCD-PNPNSPANSEAARLFSENKREYNRRVREIVEQ 540 P + + GG F+ + +Y N PP V+ +++++HPNI DGSICL IL Q W P ++ ++ + SL D + N N +AA+++S+N+ +N RVRE + + Sbjct: 67 PQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQNRESFNHRVREYISR 178
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC84_DROME (Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophila melanogaster GN=Ubc84D PE=1 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 3.036e-11 Identity = 27/107 (25.23%), Postives = 57/107 (53.27%), Query Frame = 1 Query: 226 PDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQS 543 P+ P++ G F++ + F YP PP + F ++++HPN+ G +CL I+ + W P +L ++ +++ +P P P S+ A F +++ + E +++ Sbjct: 41 PEKAPYNKGAFRIEINFPPQYPFMPPKILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTRTEQVLQALVAIVHNPEPEHPLRSDLAEEFVREHKKFMKTAEEFTKKN 147
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.965e-11 Identity = 38/112 (33.93%), Postives = 56/112 (50.00%), Query Frame = 1 Query: 220 RRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVS----------------------RMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARL 486 R PD +P++ +KL + +YP PP ++FV +M HPN+ + G ICLDILQ +WSP + + + L +I LL +P P SP N + A L Sbjct: 49 RGPDQSPFEDALWKLEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANL 160 The following BLAST results are available for this feature:
BLAST of FC878411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 226
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878411 ID=FC878411; Name=FC878411; organism=Citrus clementina; type=EST; length=846bpback to top |