FC878411

Overview
NameFC878411
Unique NameFC878411
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length846
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.236e-30
Identity = 68/173 (39.31%), Postives = 95/173 (54.91%), Query Frame = 1 
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 528
            A KR+ ++   L +DPPA  S  P  +++  W A I G                                  P+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMG----------------------------------PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140
[Close]
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.236e-30
Identity = 68/173 (39.31%), Postives = 95/173 (54.91%), Query Frame = 1 
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 528
            A KR+ ++   L +DPPA  S  P  +++  W A I G                                  P+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMG----------------------------------PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140
[Close]
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.236e-30
Identity = 68/173 (39.31%), Postives = 95/173 (54.91%), Query Frame = 1 
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 528
            A KR+ ++   L +DPPA  S  P  +++  W A I G                                  P+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMG----------------------------------PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140
[Close]
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.236e-30
Identity = 68/173 (39.31%), Postives = 95/173 (54.91%), Query Frame = 1 
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 528
            A KR+ ++   L +DPPA  S  P  +++  W A I G                                  P+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMG----------------------------------PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140
[Close]
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.920e-30
Identity = 67/173 (38.73%), Postives = 94/173 (54.34%), Query Frame = 1 
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 528
            A KR+ ++ + L +DPPA  S  P  +++  W A I G                                  P D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YN   RE
Sbjct:    2 ALKRINKELQDLGRDPPAQCSAGPVGDDLFHWQATIMG----------------------------------PPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELARE 140
[Close]
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.920e-30
Identity = 66/173 (38.15%), Postives = 94/173 (54.34%), Query Frame = 1 
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 528
            A KR+ ++   LQ+DPPA  S  P  +++  W A I G                                  P D+ + GG F LT+ F  DYP KPP + F ++++HPNI ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ P   + A+++  +K +YNR  RE
Sbjct:    2 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMG----------------------------------PPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 140
[Close]
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.920e-30
Identity = 66/173 (38.15%), Postives = 94/173 (54.34%), Query Frame = 1 
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 528
            A KR+ ++   LQ+DPPA  S  P  +++  W A I G                                  P D+ + GG F LT+ F  DYP KPP + F ++++HPNI ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ P   + A+++  +K +YNR  RE
Sbjct:    2 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMG----------------------------------PPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 140
[Close]
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.920e-30
Identity = 66/173 (38.15%), Postives = 94/173 (54.34%), Query Frame = 1 
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 528
            A KR+ ++   LQ+DPPA  S  P  +++  W A I G                                  P D+ + GG F LT+ F  DYP KPP + F ++++HPNI ++GSICLDIL++QWSP   V+ +L SI SLLCDPNP+ P   + A+++  +K +YNR  RE
Sbjct:    2 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMG----------------------------------PPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE 140
[Close]
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.981e-30
Identity = 66/173 (38.15%), Postives = 94/173 (54.34%), Query Frame = 1 
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 528
            A KR+ ++ + L +DPPA  S  P  +++  W A I G                                  P ++P+ GG F LT+ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++  YN+  RE
Sbjct:    2 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMG----------------------------------PPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLARE 140
[Close]
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.449e-29
Identity = 67/173 (38.73%), Postives = 94/173 (54.34%), Query Frame = 1 
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 528
            A KR+ ++   L +DPPA  S  P  +++  W A I G                                  P+D+P+ GG F LT+ F  DYP KPP V F +R++HPNI ++ SICLDIL++QWSP   ++ +L SI SLLCDPNP+ P   E AR++  ++ +YNR  RE
Sbjct:    2 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMG----------------------------------PNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISRE 140
The following BLAST results are available for this feature:
BLAST of FC878411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
UB2D3_MOUSE2.236e-3039.31Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA2.236e-3039.31Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN2.236e-3039.31Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UB2D2_PIG2.236e-3039.31Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UBCD1_DROME2.920e-3038.73Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UB2D1_MOUSE2.920e-3038.15Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN2.920e-3038.15Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN2.920e-3038.15Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBC2_CAEEL4.981e-3038.15Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UB2D3_BOVIN1.449e-2938.73Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CB06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878411 ID=FC878411; Name=FC878411; organism=Citrus clementina; type=EST; length=846bp
TCAACACCGGCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCCTCCAGCA
AGATCCACCCGCCGGAATCAGCGGGGCCCCTCAAGACAACAACATCATGT
TATGGAACGCCGTTATTTTTGGGTATTTGTTTTAATTAACTTTTGTTTTT
GTCTTGTAACTTTTCTGGTTTATGTTTTGATTTTTGATTTTCTTGTTTGT
TTTTCATTTGGTGATGTTTCGTAGGCCTGATGATACTCCCTGGGACGGAG
GTACGTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCT
CCAACAGTTCGGTTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGA
TGGAAGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCTATATATG
ATGTTGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAAT
CCAAACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAA
ACGAGAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAG
CCGACTAAAAGTCCAATGAAAGCACCAGCCGGTTATGCTGTAGAAATAAA
AGATGAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTAGTGTACTC
CGTAATCAATCTGATTTCAGGTGCATTGTTATTAGAGAATCTCTTCGGAT
TCTTCCTCCCAGATAGCTCTGGTTGAACCTCTTGTTAATTTCTCAACATT
TCCATCTTCTTTTCAACATCTTTCATGTAACTGTAATTTATCTGTAGCAT
TTGTATAGGGGTATTATTGCTGCAGTGAATCAGTGATGTATGTCTT
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