FC878411

Overview
NameFC878411
Unique NameFC878411
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length846
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.602e-28
Identity = 66/180 (36.67%), Postives = 93/180 (51.67%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 549
            A KR++++ K LQ+DPP   S  P   ++  W A I G                                  P D+P+ GG F +T+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A ++  +K +Y     E   ++WT
Sbjct:    2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMG----------------------------------PSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKY-----ESTARTWT 142          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.733e-28
Identity = 65/180 (36.11%), Postives = 93/180 (51.67%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 549
            A KR++++ K LQ+DPP   S  P   ++  W A I G                                  P D+P+ GG F +T+ F  DYP KPP V F +++FHPN+ ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A ++  ++ +Y     E   +SWT
Sbjct:    2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMG----------------------------------PSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ESTARSWT 142          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.570e-28
Identity = 66/180 (36.67%), Postives = 93/180 (51.67%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 549
            A KR++++ K LQ+DPP   S  P   ++  W A I G                                  P ++P+ GG F +T+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A ++  +K +Y     E   +SWT
Sbjct:    2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMG----------------------------------PSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKY-----ESTARSWT 142          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.039e-27
Identity = 65/180 (36.11%), Postives = 93/180 (51.67%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 549
            A KR++++ K LQ+DPP   S  P   ++  W A I G                                  P D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A ++  ++ +Y     E   +SWT
Sbjct:    2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMG----------------------------------PTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWT 142          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.357e-27
Identity = 63/180 (35.00%), Postives = 95/180 (52.78%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 549
            A +R++++ K LQ+DPP   S  P   ++  W A I G                                  P+++P+ GG F + + F  DYP KPP V F +++FHPNI ++G+ICLDIL++QWSP   ++ +L SI SLL DPNP+ P   E A ++  +K +Y     E + +SWT
Sbjct:    2 ATRRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMG----------------------------------PNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKY-----EAMARSWT 142          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.772e-27
Identity = 64/180 (35.56%), Postives = 93/180 (51.67%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 549
            A KR++++ K LQ+DPP   S  P   ++  W A I G                                  P ++P+ GG F +T+ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A ++  ++ +Y     E   ++WT
Sbjct:    2 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMG----------------------------------PAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----EATARNWT 142          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.772e-27
Identity = 66/180 (36.67%), Postives = 93/180 (51.67%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 549
            A KR+ ++ + LQ+DPP   S  P  +++  W A I G                                  P D+P+ GG F +T+ F  DYP KPP V F ++++HPNI ++GSICLDIL+ QWSP   V+ +L SI SLL DPNP+ P   E A ++  ++ +Y     E   QSWT
Sbjct:    2 ASKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMG----------------------------------PADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKY-----ESTAQSWT 142          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 5.155e-27
Identity = 63/180 (35.00%), Postives = 94/180 (52.22%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 549
            A KR++++ K LQ+DPP+  S  P   ++  W A I G                                  P ++P+ GG F +++ F  DYP KPP V F ++++HPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A ++  ++ +Y     E   +SWT
Sbjct:    2 ASKRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMG----------------------------------PPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKY-----ESTARSWT 142          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.733e-27
Identity = 67/181 (37.02%), Postives = 91/181 (50.28%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAP-QDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQSWT 549
            A KR+ R+ + +Q+ PPA  S  P  + +I  W A I G                                  P D+P+ GG F +++ F+ DYP KPP V F ++++HPNI + GSICLDIL+ QWSP    + +L SI SLL DPNPN P   E A L+  +K +Y     E   Q WT
Sbjct:    2 ASKRISRELRDMQRHPPANCSAGPVAEEDIFHWQATIMG----------------------------------PHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDILKEQWSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKY-----ESTAQKWT 143          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.148e-26
Identity = 63/173 (36.42%), Postives = 89/173 (51.45%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 528
            A KR+ R+   L +DPP+  S  P  +++  W A I G                                  P D+P+ GG F L++ F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI SLL DPNP+ P   E A ++  ++  Y    RE
Sbjct:    2 ALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMG----------------------------------PADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSARE 140          
The following BLAST results are available for this feature:
BLAST of FC878411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
UBC9_ARATH1.602e-2836.67SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC28_ARATH2.733e-2836.11Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC10_ARATH3.570e-2836.67Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC4_SOLLC1.039e-2736.11Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC29_ARATH1.357e-2735.00Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC8_ARATH1.772e-2735.56Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC30_ARATH1.772e-2736.67Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC11_ARATH5.155e-2735.00Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC12_ARATH6.733e-2737.02Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBC4_SCHPO1.148e-2636.42Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CB06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878411 ID=FC878411; Name=FC878411; organism=Citrus clementina; type=EST; length=846bp
TCAACACCGGCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCCTCCAGCA
AGATCCACCCGCCGGAATCAGCGGGGCCCCTCAAGACAACAACATCATGT
TATGGAACGCCGTTATTTTTGGGTATTTGTTTTAATTAACTTTTGTTTTT
GTCTTGTAACTTTTCTGGTTTATGTTTTGATTTTTGATTTTCTTGTTTGT
TTTTCATTTGGTGATGTTTCGTAGGCCTGATGATACTCCCTGGGACGGAG
GTACGTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCT
CCAACAGTTCGGTTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGA
TGGAAGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCTATATATG
ATGTTGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAAT
CCAAACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAA
ACGAGAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAG
CCGACTAAAAGTCCAATGAAAGCACCAGCCGGTTATGCTGTAGAAATAAA
AGATGAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTAGTGTACTC
CGTAATCAATCTGATTTCAGGTGCATTGTTATTAGAGAATCTCTTCGGAT
TCTTCCTCCCAGATAGCTCTGGTTGAACCTCTTGTTAATTTCTCAACATT
TCCATCTTCTTTTCAACATCTTTCATGTAACTGTAATTTATCTGTAGCAT
TTGTATAGGGGTATTATTGCTGCAGTGAATCAGTGATGTATGTCTT
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