FC878411

Overview
NameFC878411
Unique NameFC878411
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length846
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.341e-26
Identity = 61/173 (35.26%), Postives = 87/173 (50.29%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 528
            A KR+ ++   L +DPP+  S  P   ++  W A I G                                  P D+P+ GG F L + F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI S+L DPNP+ P   E A ++  ++  Y    RE
Sbjct:    2 AFKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMG----------------------------------PGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATARE 140          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.364e-26
Identity = 61/173 (35.26%), Postives = 87/173 (50.29%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 528
            A KR+ ++   L +DPP+  S  P   ++  W A I G                                  P D+P+ GG F L + F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI S+L DPNP+ P   E A ++   + +Y    RE
Sbjct:    2 ALKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMG----------------------------------PSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTARE 140          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.658e-25
Identity = 59/171 (34.50%), Postives = 92/171 (53.80%), Query Frame = 1
Query:   16 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 528
            +R++++ +RL Q+P  GI+  P +NN   ++ ++ G                                  P+D+P++GG FKL L   EDYP   P VRF+++++HPNI   G ICLD+L+++WSP   +  IL SIQ+LL  PNP+ P  ++ A L+  N+ E  R  RE
Sbjct:    6 RRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTG----------------------------------PNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNARE 142          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.694e-25
Identity = 59/173 (34.10%), Postives = 89/173 (51.45%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 528
            + KR+ ++   L +DPPA  S  P  +++  W A I G                                  P D+P+ GG F L++ F  DYP KPP V F ++++HPNI + G+ICLDIL++QWSP   ++ +L SI SLL D NP+ P   E A+++  +K +Y    +E
Sbjct:    3 SSKRIAKELSDLGRDPPASCSAGPVGDDLYHWQASIMG----------------------------------PSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKE 141          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.302e-25
Identity = 58/173 (33.53%), Postives = 89/173 (51.45%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 528
            + KR+ ++   L++DPP   S  P  +++  W A I G                                  P D+P+ GG F L++ F  DYP KPP + F ++++HPNI A+G+ICLDIL++QWSP   ++ +L SI SLL D NP+ P   E A ++  ++ +Y    RE
Sbjct:    3 SSKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMG----------------------------------PADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATARE 141          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.230e-25
Identity = 65/172 (37.79%), Postives = 91/172 (52.91%), Query Frame = 1
Query:   16 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREI 531
            KRL  +   L      GIS  P+++NI  W   I G                                    DT ++G  ++L+L F+ DYP KPP V+F +  FHPN+   G+ICLDILQ++WS  YDV  IL SIQSLL +PN +SP N++AA+L+S N+ EY + V ++
Sbjct:   38 KRLQSELMGLMMGGGPGISAFPEEDNIFCWKGTITG----------------------------------SKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWS-NQEEYRKMVEKL 174          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.075e-24
Identity = 65/167 (38.92%), Postives = 89/167 (53.29%), Query Frame = 1
Query:   16 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNR 516
            KRL  +   L   P  GIS  P  +NI  W   I G                                    DT ++   FK++L+F  DYP KPPTV+F ++ FHPN+  +G+ICLDIL+++WSP+Y+V ++L SIQSLL +PN  SP NS AA L+S N+ EY +
Sbjct:    9 KRLQSELMNLMMGPSPGISAFPDGDNIFNWIGTIQG----------------------------------AKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLWS-NQDEYKK 140          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.395e-24
Identity = 60/192 (31.25%), Postives = 96/192 (50.00%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQS 543
            A +RLM+++K L ++ P GI+  P  +++   W+ +I G                                  PD TP++GG +  TL+F  DYP  PPT++F    FHPN+Y DG++C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A +++ E++ EY R VR +  ++
Sbjct:    6 ALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQG----------------------------------PDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARKT 163          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.085e-24
Identity = 55/171 (32.16%), Postives = 89/171 (52.05%), Query Frame = 1
Query:   16 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 528
            KR+ ++   L +DPP+  S  P  +++  W A I G                                  P D+P+ GG F L++ F  DYP KPP +   ++++HPNI ++G+ICLDIL++QWSP   ++ +L SI SLL D NP+ P   E A ++ +++++Y    +E
Sbjct:    4 KRINKELSDLGRDPPSSCSAGPVGDDLYHWQASIMG----------------------------------PPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKE 140          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.967e-24
Identity = 64/172 (37.21%), Postives = 90/172 (52.33%), Query Frame = 1
Query:   16 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREI 531
            KRL  +   L      GIS  P+++NI  W   I G                                    DT ++G  ++L+L F+ DYP K P V+F +  FHPN+   G+ICLDILQ++WS  YDV  IL SIQSLL +PN +SP N++AA+L+S N+ EY + V ++
Sbjct:   39 KRLQSELMGLMMGADPGISAFPEEDNIFCWKGTITG----------------------------------SKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLWS-NQEEYRKMVEKL 175          
The following BLAST results are available for this feature:
BLAST of FC878411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
UBC1_COLGL3.341e-2635.26Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC1_MAGGR4.364e-2635.26Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBE2N_DROME1.658e-2534.50Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBC5_YEAST3.694e-2534.10Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC4_YEAST6.302e-2533.53Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC20_ARATH8.230e-2537.79Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBE2C_DICDI1.075e-2438.92Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBC7_SCHPO2.395e-2431.25Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UBC4_CANAL4.085e-2432.16Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBC19_ARATH6.967e-2437.21Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CB06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878411 ID=FC878411; Name=FC878411; organism=Citrus clementina; type=EST; length=846bp
TCAACACCGGCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCCTCCAGCA
AGATCCACCCGCCGGAATCAGCGGGGCCCCTCAAGACAACAACATCATGT
TATGGAACGCCGTTATTTTTGGGTATTTGTTTTAATTAACTTTTGTTTTT
GTCTTGTAACTTTTCTGGTTTATGTTTTGATTTTTGATTTTCTTGTTTGT
TTTTCATTTGGTGATGTTTCGTAGGCCTGATGATACTCCCTGGGACGGAG
GTACGTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCT
CCAACAGTTCGGTTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGA
TGGAAGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCTATATATG
ATGTTGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAAT
CCAAACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAA
ACGAGAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAG
CCGACTAAAAGTCCAATGAAAGCACCAGCCGGTTATGCTGTAGAAATAAA
AGATGAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTAGTGTACTC
CGTAATCAATCTGATTTCAGGTGCATTGTTATTAGAGAATCTCTTCGGAT
TCTTCCTCCCAGATAGCTCTGGTTGAACCTCTTGTTAATTTCTCAACATT
TCCATCTTCTTTTCAACATCTTTCATGTAACTGTAATTTATCTGTAGCAT
TTGTATAGGGGTATTATTGCTGCAGTGAATCAGTGATGTATGTCTT
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