FC878411

Overview
NameFC878411
Unique NameFC878411
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length846
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.188e-23
Identity = 60/195 (30.77%), Postives = 96/195 (49.23%), Query Frame = 1
Query:    1 STPAKKRLMRDFKRLQQDPPAGIS-GAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQS 543
            S+ +++ L +  K +Q++PP G S G   D +I  W  +I G                                  P+DT ++GG F  TL F +DYP  PP ++F + ++HPN++ +G +C+ IL               +W P++    IL S+ S+L  PN  SPAN +AA+ F EN +E+ +RVR +V +S
Sbjct:    3 SSASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIG----------------------------------PEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRRS 163          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.027e-23
Identity = 49/105 (46.67%), Postives = 73/105 (69.52%), Query Frame = 1
Query:  226 PDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQ 540
            P DTP+ G  FK++L+F ++YP  PP ++F+S M+HPN+   G+ICLDIL+ +WS +Y+V  IL S+QSLL +PN  SP N+ AA L+  +  EY ++V    E+
Sbjct:   48 PKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEYRKKVLACYEE 152          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.458e-23
Identity = 65/179 (36.31%), Postives = 92/179 (51.40%), Query Frame = 1
Query:   16 KRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNR----RVREIVE 537
            KRL  +   L      GIS  P  D+N++ W   I G                                  P DT ++G  FK+++ F  +YP  PPT+ F S M+HPN+   G+ICLDIL+++WS +Y+V  IL S+QSLL +PN  SP N++AA L+S++  EY R    R +EI E
Sbjct:   31 KRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITG----------------------------------PSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKRLLMQRYKEIDE 175          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.516e-23
Identity = 58/171 (33.92%), Postives = 87/171 (50.88%), Query Frame = 1
Query:   16 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 528
            KR++++ +RL  +P  GIS  P  +N   +   I G                                  P D+P++GG F L L  T+DYP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N++E   R RE
Sbjct:    6 KRIIKETQRLMTEPAPGISATPATDNFRYFKVAISG----------------------------------PLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARARE 142          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.898e-23
Identity = 61/192 (31.77%), Postives = 93/192 (48.44%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQS 543
            A KRLM ++K+L  +PP GI   P  + N   W A+I G                                  P+DT ++ G F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A++++ +++ ++ +  ++IV++S
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMG----------------------------------PEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 162          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.898e-23
Identity = 61/192 (31.77%), Postives = 93/192 (48.44%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQS 543
            A KRLM ++K+L  +PP GI   P  + N   W A+I G                                  P+DT ++ G F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A++++ +++ ++ +  ++IV++S
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMG----------------------------------PEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 162          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.898e-23
Identity = 61/192 (31.77%), Postives = 93/192 (48.44%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQS 543
            A KRLM ++K+L  +PP GI   P  + N   W A+I G                                  P+DT ++ G F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A++++ +++ ++ +  ++IV++S
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMG----------------------------------PEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 162          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.898e-23
Identity = 61/192 (31.77%), Postives = 93/192 (48.44%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVREIVEQS 543
            A KRLM ++K+L  +PP GI   P  + N   W A+I G                                  P+DT ++ G F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +A++++ +++ ++ +  ++IV++S
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMG----------------------------------PEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKVAKQIVQKS 162          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.314e-22
Identity = 60/189 (31.75%), Postives = 93/189 (49.21%), Query Frame = 1
Query:    1 STPAKKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 525
            S  A+KRL+++ ++L +D P GI   P+ +NNI +W+ +I G                                  P DTP+  G F   L+F +DYP  PP + F   + HPNIY +G +C+ IL             + +WSP+  V  IL S+ S+L +PN  S AN +A  L+ +N+ E+ R+V+
Sbjct:    2 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQG----------------------------------PPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVK 156          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.716e-22
Identity = 60/171 (35.09%), Postives = 87/171 (50.88%), Query Frame = 1
Query:   16 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVRE 528
            KRL ++ + L      GI+  P  +N+  W A + G                                  P DT ++   +KLTL+F  DYP KPP V+F +  +HPN+   G+ICLDIL+  W+  YDV  IL S+QSLL +PN  SP N++AA ++S N+ EY + + E
Sbjct:   33 KRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDG----------------------------------PKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHE 168          
The following BLAST results are available for this feature:
BLAST of FC878411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
UBC15_SCHPO1.188e-2330.77Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UBC11_YEAST2.027e-2346.67Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC11_SCHPO3.458e-2336.31Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBE2N_DICDI4.516e-2333.92Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UB2G2_PONAB5.898e-2331.77Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE5.898e-2331.77Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN5.898e-2331.77Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UB2G2_BOVIN5.898e-2331.77Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UBC7_YEAST1.314e-2231.75Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBE2C_SPISO1.716e-2235.09Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CB06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878411 ID=FC878411; Name=FC878411; organism=Citrus clementina; type=EST; length=846bp
TCAACACCGGCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCCTCCAGCA
AGATCCACCCGCCGGAATCAGCGGGGCCCCTCAAGACAACAACATCATGT
TATGGAACGCCGTTATTTTTGGGTATTTGTTTTAATTAACTTTTGTTTTT
GTCTTGTAACTTTTCTGGTTTATGTTTTGATTTTTGATTTTCTTGTTTGT
TTTTCATTTGGTGATGTTTCGTAGGCCTGATGATACTCCCTGGGACGGAG
GTACGTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCT
CCAACAGTTCGGTTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGA
TGGAAGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCTATATATG
ATGTTGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAAT
CCAAACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAA
ACGAGAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAG
CCGACTAAAAGTCCAATGAAAGCACCAGCCGGTTATGCTGTAGAAATAAA
AGATGAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTAGTGTACTC
CGTAATCAATCTGATTTCAGGTGCATTGTTATTAGAGAATCTCTTCGGAT
TCTTCCTCCCAGATAGCTCTGGTTGAACCTCTTGTTAATTTCTCAACATT
TCCATCTTCTTTTCAACATCTTTCATGTAACTGTAATTTATCTGTAGCAT
TTGTATAGGGGTATTATTGCTGCAGTGAATCAGTGATGTATGTCTT
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