FC878411

Overview
NameFC878411
Unique NameFC878411
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length846
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = 1
Query:   16 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRE 507
            +R++++ +RL  +P  GI   P ++N   ++ VI G                                  P D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAG----------------------------------PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQ 135          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC9A_DANRE (SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 59/179 (32.96%), Postives = 82/179 (45.81%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 525
            A  RL ++ K  ++D P G    P  N     N+M W   I G                                     TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:    5 ALSRLAQERKAWRKDHPFGFVAVPMKNPDGTMNLMNWECAIPG----------------------------------KKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.453e-21
Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = 1
Query:   16 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRE 507
            +R++++ +RL  +P  GI   P ++N   ++ VI G                                  P D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAG----------------------------------PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.453e-21
Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = 1
Query:   16 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRE 507
            +R++++ +RL  +P  GI   P ++N   ++ VI G                                  P D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAG----------------------------------PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.453e-21
Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = 1
Query:   16 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRE 507
            +R++++ +RL  +P  GI   P ++N   ++ VI G                                  P D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAG----------------------------------PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.453e-21
Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = 1
Query:   16 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRE 507
            +R++++ +RL  +P  GI   P ++N   ++ VI G                                  P D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAG----------------------------------PQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC9_XENTR (SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.453e-21
Identity = 59/179 (32.96%), Postives = 82/179 (45.81%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 525
            A  RL ++ K  ++D P G    P  N     N+M W   I G                                     TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:    5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPG----------------------------------KKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC9_XENLA (SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=ube2i PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.453e-21
Identity = 59/179 (32.96%), Postives = 82/179 (45.81%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 525
            A  RL ++ K  ++D P G    P  N     N+M W   I G                                     TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:    5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPG----------------------------------KKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC9_SPETR (SUMO-conjugating enzyme UBC9 OS=Spermophilus tridecemlineatus GN=UBE2I PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.453e-21
Identity = 59/179 (32.96%), Postives = 82/179 (45.81%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 525
            A  RL ++ K  ++D P G    P  N     N+M W   I G                                     TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:    5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPG----------------------------------KKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of FC878411 vs. ExPASy Swiss-Prot
Match: UBC9_RAT (SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.453e-21
Identity = 59/179 (32.96%), Postives = 82/179 (45.81%), Query Frame = 1
Query:   10 AKKRLMRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKREYNRRVR 525
            A  RL ++ K  ++D P G    P  N     N+M W   I G                                     TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:    5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPG----------------------------------KKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
The following BLAST results are available for this feature:
BLAST of FC878411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
UBE2N_RAT1.112e-2132.32Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBC9A_DANRE1.112e-2132.96SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=u... [more]
UBE2N_PONAB1.453e-2132.32Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE1.453e-2132.32Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN1.453e-2132.32Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN1.453e-2132.32Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBC9_XENTR1.453e-2132.96SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis... [more]
UBC9_XENLA1.453e-2132.96SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=... [more]
UBC9_SPETR1.453e-2132.96SUMO-conjugating enzyme UBC9 OS=Spermophilus tride... [more]
UBC9_RAT1.453e-2132.96SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA15CB06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878411 ID=FC878411; Name=FC878411; organism=Citrus clementina; type=EST; length=846bp
TCAACACCGGCGAAGAAGCGGCTGATGCGGGACTTCAAGCGCCTCCAGCA
AGATCCACCCGCCGGAATCAGCGGGGCCCCTCAAGACAACAACATCATGT
TATGGAACGCCGTTATTTTTGGGTATTTGTTTTAATTAACTTTTGTTTTT
GTCTTGTAACTTTTCTGGTTTATGTTTTGATTTTTGATTTTCTTGTTTGT
TTTTCATTTGGTGATGTTTCGTAGGCCTGATGATACTCCCTGGGACGGAG
GTACGTTCAAGTTGACTCTTCAGTTTACAGAGGATTATCCGAATAAACCT
CCAACAGTTCGGTTCGTTTCACGGATGTTTCATCCAAATATCTATGCGGA
TGGAAGTATCTGCCTGGATATATTACAAAATCAGTGGAGTCCTATATATG
ATGTTGCAGCTATACTGACCTCCATCCAGTCGCTGCTTTGTGATCCAAAT
CCAAACTCCCCTGCAAATTCTGAAGCAGCTCGGCTGTTTAGTGAGAATAA
ACGAGAGTACAACCGAAGAGTGCGTGAAATAGTGGAGCAAAGCTGGACAG
CCGACTAAAAGTCCAATGAAAGCACCAGCCGGTTATGCTGTAGAAATAAA
AGATGAAAACTGGGGCTGGTGTGGCTGGTTTGTTCAATAGTAGTGTACTC
CGTAATCAATCTGATTTCAGGTGCATTGTTATTAGAGAATCTCTTCGGAT
TCTTCCTCCCAGATAGCTCTGGTTGAACCTCTTGTTAATTTCTCAACATT
TCCATCTTCTTTTCAACATCTTTCATGTAACTGTAATTTATCTGTAGCAT
TTGTATAGGGGTATTATTGCTGCAGTGAATCAGTGATGTATGTCTT
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