FC878420

Overview
NameFC878420
Unique NameFC878420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length873
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_OENGL (50S ribosomal protein L16, chloroplastic OS=Oenothera glazioviana GN=rpl16 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.523e-21
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 3 
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGRM G + RGN ICFG+YALQALEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRMRGISYRGNRICFGKYALQALEPAWITSRQIEAGRRAMTRNVRRGGK 63
[Close]
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_OENEH (50S ribosomal protein L16, chloroplastic OS=Oenothera elata subsp. hookeri GN=rpl16 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.523e-21
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 3 
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGRM G + RGN ICFG+YALQALEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRMRGISYRGNRICFGKYALQALEPAWITSRQIEAGRRAMTRNVRRGGK 63
[Close]
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_OENBI (50S ribosomal protein L16, chloroplastic OS=Oenothera biennis GN=rpl16 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.523e-21
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 3 
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGRM G + RGN ICFG+YALQALEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRMRGISYRGNRICFGKYALQALEPAWITSRQIEAGRRAMTRNVRRGGK 63
[Close]
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_OENAR (50S ribosomal protein L16, chloroplastic OS=Oenothera argillicola GN=rpl16 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.523e-21
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 3 
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGRM G + RGN ICFG+YALQALEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRMRGISYRGNRICFGKYALQALEPAWITSRQIEAGRRAMTRNVRRGGK 63
[Close]
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_LEPVR (50S ribosomal protein L16, chloroplastic OS=Lepidium virginicum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.523e-21
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 3 
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGR+ G +SRGN ICFGRYALQ LEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLEPAWITSRQIEAGRRAMSRNVRRGGK 63
[Close]
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_EUCGG (50S ribosomal protein L16, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.523e-21
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 3 
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGRM G + RGN ICFG+YALQALEPAWIT+RQIEAGRRAM RNV+RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRMKGISYRGNRICFGKYALQALEPAWITSRQIEAGRRAMTRNVRRGGK 63
[Close]
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_WHEAT (50S ribosomal protein L16, chloroplastic OS=Triticum aestivum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.989e-21
Identity = 48/63 (76.19%), Postives = 53/63 (84.13%), Query Frame = 3 
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGRM GK+ RGN ICFGRYALQALEPAWITARQIEAGRRA+ R  +RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRMKGKSCRGNRICFGRYALQALEPAWITARQIEAGRRAITRYARRGGK 63
[Close]
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_SPIOL (50S ribosomal protein L16, chloroplastic OS=Spinacia oleracea GN=rpl16 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.989e-21
Identity = 48/63 (76.19%), Postives = 53/63 (84.13%), Query Frame = 3 
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM RN +RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALEPAWITSRQIEAGRRAMTRNARRGGK 63
[Close]
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_SACOF (50S ribosomal protein L16, chloroplastic OS=Saccharum officinarum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.989e-21
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 3 
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGRM GK+ RGN ICFGRYALQ LEPAWITARQIEAGRRAM R  +RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRMNGKSCRGNHICFGRYALQVLEPAWITARQIEAGRRAMTRYARRGGK 63
[Close]
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_SACHY (50S ribosomal protein L16, chloroplastic OS=Saccharum hybrid GN=rpl16 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.989e-21
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 3 
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGRM GK+ RGN ICFGRYALQ LEPAWITARQIEAGRRAM R  +RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRMNGKSCRGNHICFGRYALQVLEPAWITARQIEAGRRAMTRYARRGGK 63
The following BLAST results are available for this feature:
BLAST of FC878420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK16_OENGL1.523e-2176.1950S ribosomal protein L16, chloroplastic OS=Oenoth... [more]
RK16_OENEH1.523e-2176.1950S ribosomal protein L16, chloroplastic OS=Oenoth... [more]
RK16_OENBI1.523e-2176.1950S ribosomal protein L16, chloroplastic OS=Oenoth... [more]
RK16_OENAR1.523e-2176.1950S ribosomal protein L16, chloroplastic OS=Oenoth... [more]
RK16_LEPVR1.523e-2176.1950S ribosomal protein L16, chloroplastic OS=Lepidi... [more]
RK16_EUCGG1.523e-2176.1950S ribosomal protein L16, chloroplastic OS=Eucaly... [more]
RK16_WHEAT1.989e-2176.1950S ribosomal protein L16, chloroplastic OS=Tritic... [more]
RK16_SPIOL1.989e-2176.1950S ribosomal protein L16, chloroplastic OS=Spinac... [more]
RK16_SACOF1.989e-2176.1950S ribosomal protein L16, chloroplastic OS=Saccha... [more]
RK16_SACHY1.989e-2176.1950S ribosomal protein L16, chloroplastic OS=Saccha... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DB07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878420 ID=FC878420; Name=FC878420; organism=Citrus clementina; type=EST; length=873bp
AAAGATTTCAAGAAAAGTTTGATAGAAAGGGTTTGTTCAGGAAGAATCGA
AAAAGGGGTTTTTAAGATAACAAAGCAGTGCTAATAGCACCACCCCTGTT
CTTATCCCCCTCCATTGAAACCCTAAATTCCTCGTATCATATTTTCATGG
CAATCGCTTCAATTCTCAACTCAAATCGGCTGCTTCTGTCAAAGCGAATT
GTAAATTGTTTTGATGGGAATCTTCTTCGTTACAATGTCATCAAATCCCT
TAGTTTCGGACCCGTTATTCCAGATCCCGGTCCCAAACTCAGTAGCCTTC
AGGCTAAAACCTTTCTTATGAACCCAACAACTCCAATTTTAACCAGCAGC
AGCGAGGGTAATTCAAGAACCCATTCCAATCGCGATCTCAAAGTCCAACA
ATCCGTAGGAGTGATGATGGGTGGCCGTTCGTTTCCATTAATATTCACGA
ATCCGAATCCGAATCCGAATCGCTTGCAAGTTTCGATTGGTGCCGCTCTC
TTTTTCGTTTCGGTGGGCTTGTTCCTGTTCCTGTTGTCCAGCGGACAAAT
GACTAGTCTCCAACAGAAGGTTCTGGATCTTAGTCATTTACTAACGGAGA
CAACAAAATCATTATTCATCGGACACGACACTCAACGTTGGATCTCTGAT
TATTCACCCGTGACAATGTCGATGTCAATGTTGTTGGCCGGCCCCAAACG
AATAAAGTTTCCCAAACAACACAGAGGAAGAATGACGGGAAAAGCCAGTC
GAGGAAATCTTATTTGCTTCGGGAGGTATGCTCTTCAAGCGCTCGAACCC
GCCTGGATCACAGCCAGACAAATCGAAGCGGGGCGCCGAGCAATGGTACG
GAATGTCAAGCGCGGTGGAAAAA
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