FC878420
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RL16_THEEB (50S ribosomal protein L16 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplP PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.872e-20 Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PKR KF KQ RGRMTG ASRGN I FG YALQALEPAWITARQIEAGRRAM R ++RGGK Sbjct: 1 MLSPKRTKFRKQQRGRMTGVASRGNSIHFGDYALQALEPAWITARQIEAGRRAMTRYIRRGGK 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_LIRTU (50S ribosomal protein L16, chloroplastic OS=Liriodendron tulipifera GN=rpl16 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.872e-20 Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 3 Query: 693 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM R +RGGK Sbjct: 2 PKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRYARRGGK 61
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_CALFG (50S ribosomal protein L16, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl16 PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 4.899e-20 Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PKR +F KQHRGRM G + RGN ICFGRYALQALEP+WIT+RQIEAGRRAM R +RGGK Sbjct: 1 MLSPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPSWITSRQIEAGRRAMTRYARRGGK 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_TOBAC (50S ribosomal protein L16, chloroplastic OS=Nicotiana tabacum GN=rpl16 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 6.398e-20 Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PKR +F KQHRGRM G + RGN I FG+YALQALEPAWIT+RQIEAGRRAM RN +RGGK Sbjct: 1 MLSPKRTRFRKQHRGRMKGISHRGNHISFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGK 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_STAPU (50S ribosomal protein L16, chloroplastic OS=Staurastrum punctulatum GN=rpl16 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 6.398e-20 Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + P+R K+ KQHRGR+ G A+RGN ICFGR+ALQALEP+WIT+RQIEAGRRAM R +RGGK Sbjct: 1 MLSPRRTKYRKQHRGRLKGTATRGNRICFGRFALQALEPSWITSRQIEAGRRAMTRYARRGGK 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_SOLLC (50S ribosomal protein L16, chloroplastic OS=Solanum lycopersicum GN=rpl16 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 6.398e-20 Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PKR +F KQHRGRM G + RGN I FG+YALQALEPAWIT+RQIEAGRRAM RN +RGGK Sbjct: 1 MLSPKRTRFRKQHRGRMKGISYRGNRISFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGK 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_NYMAL (50S ribosomal protein L16, chloroplastic OS=Nymphaea alba GN=rpl16 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 6.398e-20 Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRA+ R +RGGK Sbjct: 1 MLSPKRTRFRKQHRGRMKGVSYRGNRICFGRYALQALEPAWITSRQIEAGRRAISRYARRGGK 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_NICTO (50S ribosomal protein L16, chloroplastic OS=Nicotiana tomentosiformis GN=rpl16 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 6.398e-20 Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PKR +F KQHRGRM G + RGN I FG+YALQALEPAWIT+RQIEAGRRAM RN +RGGK Sbjct: 1 MLSPKRTRFRKQHRGRMKGISHRGNHISFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGK 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_NICSY (50S ribosomal protein L16, chloroplastic OS=Nicotiana sylvestris GN=rpl16 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 6.398e-20 Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PKR +F KQHRGRM G + RGN I FG+YALQALEPAWIT+RQIEAGRRAM RN +RGGK Sbjct: 1 MLSPKRTRFRKQHRGRMKGISHRGNHISFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGK 63
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_HUPLU (50S ribosomal protein L16, chloroplastic OS=Huperzia lucidula GN=rpl16 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 6.398e-20 Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 3 Query: 684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872 + PKR KF KQHRGR+ G ++RGN ICFGR+ALQALEPAWIT+RQIEAGRRA+ R +RGGK Sbjct: 1 MLSPKRTKFRKQHRGRLGGVSTRGNRICFGRFALQALEPAWITSRQIEAGRRAITRYARRGGK 63 The following BLAST results are available for this feature:
BLAST of FC878420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878420 ID=FC878420; Name=FC878420; organism=Citrus clementina; type=EST; length=873bpback to top |