FC878420

Overview
NameFC878420
Unique NameFC878420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length873
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RL16_THEEB (50S ribosomal protein L16 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplP PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.872e-20
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR KF KQ RGRMTG ASRGN I FG YALQALEPAWITARQIEAGRRAM R ++RGGK
Sbjct:    1 MLSPKRTKFRKQQRGRMTGVASRGNSIHFGDYALQALEPAWITARQIEAGRRAMTRYIRRGGK 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_LIRTU (50S ribosomal protein L16, chloroplastic OS=Liriodendron tulipifera GN=rpl16 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.872e-20
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 3
Query:  693 PKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRAM R  +RGGK
Sbjct:    2 PKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMTRYARRGGK 61          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_CALFG (50S ribosomal protein L16, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.899e-20
Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGRM G + RGN ICFGRYALQALEP+WIT+RQIEAGRRAM R  +RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRMKGISYRGNHICFGRYALQALEPSWITSRQIEAGRRAMTRYARRGGK 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_TOBAC (50S ribosomal protein L16, chloroplastic OS=Nicotiana tabacum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.398e-20
Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGRM G + RGN I FG+YALQALEPAWIT+RQIEAGRRAM RN +RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRMKGISHRGNHISFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGK 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_STAPU (50S ribosomal protein L16, chloroplastic OS=Staurastrum punctulatum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.398e-20
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  P+R K+ KQHRGR+ G A+RGN ICFGR+ALQALEP+WIT+RQIEAGRRAM R  +RGGK
Sbjct:    1 MLSPRRTKYRKQHRGRLKGTATRGNRICFGRFALQALEPSWITSRQIEAGRRAMTRYARRGGK 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_SOLLC (50S ribosomal protein L16, chloroplastic OS=Solanum lycopersicum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.398e-20
Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGRM G + RGN I FG+YALQALEPAWIT+RQIEAGRRAM RN +RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRMKGISYRGNRISFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGK 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_NYMAL (50S ribosomal protein L16, chloroplastic OS=Nymphaea alba GN=rpl16 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.398e-20
Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGRM G + RGN ICFGRYALQALEPAWIT+RQIEAGRRA+ R  +RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRMKGVSYRGNRICFGRYALQALEPAWITSRQIEAGRRAISRYARRGGK 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_NICTO (50S ribosomal protein L16, chloroplastic OS=Nicotiana tomentosiformis GN=rpl16 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.398e-20
Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGRM G + RGN I FG+YALQALEPAWIT+RQIEAGRRAM RN +RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRMKGISHRGNHISFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGK 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_NICSY (50S ribosomal protein L16, chloroplastic OS=Nicotiana sylvestris GN=rpl16 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.398e-20
Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR +F KQHRGRM G + RGN I FG+YALQALEPAWIT+RQIEAGRRAM RN +RGGK
Sbjct:    1 MLSPKRTRFRKQHRGRMKGISHRGNHISFGKYALQALEPAWITSRQIEAGRRAMTRNARRGGK 63          
BLAST of FC878420 vs. ExPASy Swiss-Prot
Match: RK16_HUPLU (50S ribosomal protein L16, chloroplastic OS=Huperzia lucidula GN=rpl16 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.398e-20
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 3
Query:  684 LAGPKRIKFPKQHRGRMTGKASRGNLICFGRYALQALEPAWITARQIEAGRRAMVRNVKRGGK 872
            +  PKR KF KQHRGR+ G ++RGN ICFGR+ALQALEPAWIT+RQIEAGRRA+ R  +RGGK
Sbjct:    1 MLSPKRTKFRKQHRGRLGGVSTRGNRICFGRFALQALEPAWITSRQIEAGRRAITRYARRGGK 63          
The following BLAST results are available for this feature:
BLAST of FC878420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL16_THEEB2.872e-2077.7850S ribosomal protein L16 OS=Thermosynechococcus e... [more]
RK16_LIRTU2.872e-2078.3350S ribosomal protein L16, chloroplastic OS=Liriod... [more]
RK16_CALFG4.899e-2073.0250S ribosomal protein L16, chloroplastic OS=Calyca... [more]
RK16_TOBAC6.398e-2073.0250S ribosomal protein L16, chloroplastic OS=Nicoti... [more]
RK16_STAPU6.398e-2069.8450S ribosomal protein L16, chloroplastic OS=Staura... [more]
RK16_SOLLC6.398e-2073.0250S ribosomal protein L16, chloroplastic OS=Solanu... [more]
RK16_NYMAL6.398e-2073.0250S ribosomal protein L16, chloroplastic OS=Nympha... [more]
RK16_NICTO6.398e-2073.0250S ribosomal protein L16, chloroplastic OS=Nicoti... [more]
RK16_NICSY6.398e-2073.0250S ribosomal protein L16, chloroplastic OS=Nicoti... [more]
RK16_HUPLU6.398e-2071.4350S ribosomal protein L16, chloroplastic OS=Huperz... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DB07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878420 ID=FC878420; Name=FC878420; organism=Citrus clementina; type=EST; length=873bp
AAAGATTTCAAGAAAAGTTTGATAGAAAGGGTTTGTTCAGGAAGAATCGA
AAAAGGGGTTTTTAAGATAACAAAGCAGTGCTAATAGCACCACCCCTGTT
CTTATCCCCCTCCATTGAAACCCTAAATTCCTCGTATCATATTTTCATGG
CAATCGCTTCAATTCTCAACTCAAATCGGCTGCTTCTGTCAAAGCGAATT
GTAAATTGTTTTGATGGGAATCTTCTTCGTTACAATGTCATCAAATCCCT
TAGTTTCGGACCCGTTATTCCAGATCCCGGTCCCAAACTCAGTAGCCTTC
AGGCTAAAACCTTTCTTATGAACCCAACAACTCCAATTTTAACCAGCAGC
AGCGAGGGTAATTCAAGAACCCATTCCAATCGCGATCTCAAAGTCCAACA
ATCCGTAGGAGTGATGATGGGTGGCCGTTCGTTTCCATTAATATTCACGA
ATCCGAATCCGAATCCGAATCGCTTGCAAGTTTCGATTGGTGCCGCTCTC
TTTTTCGTTTCGGTGGGCTTGTTCCTGTTCCTGTTGTCCAGCGGACAAAT
GACTAGTCTCCAACAGAAGGTTCTGGATCTTAGTCATTTACTAACGGAGA
CAACAAAATCATTATTCATCGGACACGACACTCAACGTTGGATCTCTGAT
TATTCACCCGTGACAATGTCGATGTCAATGTTGTTGGCCGGCCCCAAACG
AATAAAGTTTCCCAAACAACACAGAGGAAGAATGACGGGAAAAGCCAGTC
GAGGAAATCTTATTTGCTTCGGGAGGTATGCTCTTCAAGCGCTCGAACCC
GCCTGGATCACAGCCAGACAAATCGAAGCGGGGCGCCGAGCAATGGTACG
GAATGTCAAGCGCGGTGGAAAAA
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