FC878424

Overview
NameFC878424
Unique NameFC878424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878424 vs. ExPASy Swiss-Prot
Match: HPPA_CHLAA (Pyrophosphate-energized proton pump OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=hppA PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.926e-13
Identity = 55/182 (30.22%), Postives = 85/182 (46.70%), Query Frame = 3
Query:  246 KCAEIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMGXXXXXXXXXXXYVSINLFKLYYDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            K  E+   I  GA ++L  Q++ +S+++ + +   F+   SV       E      G      +  AI   +AFL+G+L S   GF+GM +    N R    ARKG + A   A+++ +V G            +   +F +   D       ++ G+   GS +ALF RVGGGIYTKA DV
Sbjct:   42 KMREVWGFIKTGANAYLSQQFRTISILIVILT---FVLAASVFIIPPTTE-AVERFGSKEAATIWVAIGRAVAFLMGSLFSYAVGFVGMNVAVEGNVRVAAAARKGYNPALQVAYKSGSVTGMLTVGLGLLGGTLIFMVFGIAAPD-------ALLGFGFGGSLIALFMRVGGGIYTKAADV 212          

HSP 2 Score: 20.4014 bits (41), Expect = 2.926e-13
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 1
Query:  796 ADLVGKVERNI 828
            ADLVGKVE  I
Sbjct:  214 ADLVGKVEAGI 224          
BLAST of FC878424 vs. ExPASy Swiss-Prot
Match: HPPA_PYRAE (Pyrophosphate-energized proton pump OS=Pyrobaculum aerophilum GN=hppA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.931e-13
Identity = 55/179 (30.73%), Postives = 86/179 (48.04%), Query Frame = 3
Query:  258 IQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTT-LEARKGVSKAFITAFRARAVMGXXXXXXXXXXXYVSINLFKLYYDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            I  AI+ GA ++LF QY+ L+V++ + + +I +     +         T+               + +AF++GAL S L+G+LGM +TT + +R     A  G+ KA + ++RA AVMG                +F+    DDW      +       S + LF RVGGGIYTKA D+
Sbjct:   41 ISQAIATGARAYLFRQYRTLAVLLVILAVLILVAIDMPRR--------TFG-------------LTALAFIVGALGSMLAGYLGMYVTTRSASRVAQAAATGGMGKALLVSWRAGAVMGLSLASIALLLISGFYLVFRSVLPDDWA---VPLVALGFGASLVTLFMRVGGGIYTKAADL 195          

HSP 2 Score: 20.4014 bits (41), Expect = 2.931e-13
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 1
Query:  796 ADLVGKVERNI 828
            ADLVGKVE  I
Sbjct:  197 ADLVGKVEAGI 207          
BLAST of FC878424 vs. ExPASy Swiss-Prot
Match: HPPA_NITEU (Pyrophosphate-energized proton pump OS=Nitrosomonas europaea GN=hppA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.935e-13
Identity = 52/181 (28.73%), Postives = 83/181 (45.86%), Query Frame = 3
Query:  255 EIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMG--XXXXXXXXXXXYVSINLFKLYYDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            EI  A+  GA+++L  QY    + +G+  T++F+  G    ++T                        I F LGA+ S L+GF+GM ++  +N RT   AR G+++A   AFR  AV G             Y ++ +           L   + G+   GS +++F R+GGGI+TK  DV
Sbjct:   38 EIAAAVQEGASAYLKRQY----LTIGMVGTVLFVIIGLALSWNT-----------------------AIGFALGAILSGLAGFMGMNVSVQSNVRTAEAARSGLNEALAIAFRGGAVTGMLVVGLGLLGVAGYTALLVSGADETSSISDLIHPLIGFAFGGSLISIFARLGGGIFTKGADV 191          

HSP 2 Score: 20.4014 bits (41), Expect = 2.935e-13
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 1
Query:  796 ADLVGKVERNI 828
            ADLVGKVE  I
Sbjct:  193 ADLVGKVEAGI 203          
BLAST of FC878424 vs. ExPASy Swiss-Prot
Match: HPPA2_METMA (Pyrophosphate-energized proton pump 2 OS=Methanosarcina mazei GN=hppA2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.101e-13
Identity = 57/180 (31.67%), Postives = 81/180 (45.00%), Query Frame = 3
Query:  255 EIQNAISVGATSFLFPQYKYLSVVMGVFSTII-FLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMGXXXXXXXXXXXYVSINLFKLYYDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            EI  AI  G+T+++  QY+ ++VV  + S +I FL    +K                              FL GA++S  +G++GM I+  AN RT   A  G  KA   AFR  AV G             + +L+ LY D D       + G+    S ++LF R GGGI+TKA DV
Sbjct:   38 EIAEAIKEGSTAYMKRQYRTIAVVSVIISLLILFLLDEGLK--------------------------IAAGFLAGAISSAAAGYIGMSISVRANVRTASAASGGAGKALKIAFRGGAVTGLAVIGLALLG---TSSLYILYGDAD------LVVGFGFGASLISLFARAGGGIFTKAADV 182          
BLAST of FC878424 vs. ExPASy Swiss-Prot
Match: HPPA2_RHOPA (Pyrophosphate-energized proton pump OS=Rhodopseudomonas palustris GN=hppA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.405e-12
Identity = 51/182 (28.02%), Postives = 79/182 (43.41%), Query Frame = 3
Query:  255 EIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMGXXXXXXXXXXXYVSINLFKLYYDDDWE---GLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            EI  AI  GA ++L  QYK +++V  V + +IF F G +                           +   F+LGA+ S   GF+GM ++  AN RT   A KG+  A   AF+  A+ G            + ++LF  +            + + G     S +++F R+GGGI+TK  DV
Sbjct:   40 EIAGAIQQGAAAYLARQYKTIAIVGAVLAILIFFFLGGL---------------------------TAAGFVLGAVLSGACGFIGMNVSVRANVRTAQAATKGIGPALDVAFKGGAITG----MLVVGLGLLGVSLFFWFLSGGIHADPATLKPLLGLAFGSSLISIFARLGGGIFTKGADV 190          

HSP 2 Score: 20.7866 bits (42), Expect = 1.405e-12
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  796 ADLVGKVERNI 828
            ADLVGKVE +I
Sbjct:  192 ADLVGKVEASI 202          
BLAST of FC878424 vs. ExPASy Swiss-Prot
Match: HPPA_THETN (Pyrophosphate-energized proton pump OS=Thermoanaerobacter tengcongensis GN=hppA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.922e-12
Identity = 58/189 (30.69%), Postives = 88/189 (46.56%), Query Frame = 3
Query:  246 KCAEIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFL--FQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMGXXXXXXXXXXXYVSINLFKLY-----YDDDWEGLYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            K  +I +AI  GA +FL  QYK ++ +  + + II +  + G +   S++              AL  A+    AF+ GA  S LSG++GM +   +N R    AR G+++A   A +  AV G           +    LF  Y      D+  +     I G+    S +ALF ++GGGIYTKA DV
Sbjct:   35 KMQQISDAIKEGAMAFLNRQYKTIASLALIVAVIIVVANYYGHLSEGSSQ--------------ALSFALHVGFAFITGAFCSALSGYIGMYMAVNSNIRAAAGARSGLNRALQIALKGGAVTG---LAVTALSLFGVATLFLAYGGLSGQDELIKEAPSLIVGFGFGASFVALFAQLGGGIYTKAADV 206          
BLAST of FC878424 vs. ExPASy Swiss-Prot
Match: AVPX_ARATH (Pyrophosphate-energized membrane proton pump 3 OS=Arabidopsis thaliana GN=AVPL2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.132e-11
Identity = 57/195 (29.23%), Postives = 89/195 (45.64%), Query Frame = 3
Query:  234 EAAIKCAEIQNAISVGATSFLFPQYKYLSVVMGVFSTII---FLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEARKGVSKAFITAFRARAVMGXXXXXXXXXXXYVSINLFKLYYDDDWEG------LYESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            E   +  +I +AI  GA  FL  QY  +S +  + + +I   +LF+           P    +G+      ++A  +  AFLLGAL S ++G++GM ++  AN R +  AR+   +A   A RA                 +  + F ++ D D  G      L   + GY    S +ALF ++GGGIYTK  DV
Sbjct:   94 EGPPEMVQISDAIRDGAEGFLRTQYGTISKMAFLLAFVILCIYLFRNLT--------PQQEASGL---GRTMSAYITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSALVVVGMAVIGIAILYSTFYVWLDVDSPGSMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKGADV 277          

HSP 2 Score: 20.7866 bits (42), Expect = 1.132e-11
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 1
Query:  796 ADLVGKVERNI 828
            ADLVGKVE  I
Sbjct:  279 ADLVGKVEHGI 289          
BLAST of FC878424 vs. ExPASy Swiss-Prot
Match: HPPA_THEMA (Pyrophosphate-energized proton pump OS=Thermotoga maritima GN=hppA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.547e-11
Identity = 59/201 (29.35%), Postives = 88/201 (43.78%), Query Frame = 3
Query:  234 EAAIKCAEIQNAISVGATSFLFPQYKYLSVVMGVFSTIIFLFQGSVKGFSTKHEPCTYNTGIMCKPALVNAIFSTIAFLLGALTSTLSGFLGMKITTYANARTTLEAR--KGVSKAFITAFRARAVMGXXXXXXXXXXXYVSINLF--------KLYYDDDWEGLY-----ESITGYDLSGSSMALFGRVGGGIYTKAVDV 791
            E   +  EI + I  GA SFL  + K +  V  V + ++ +F              T+ TG+              AFLLGA+ S  +G +GMK+ T AN R    AR  K +  A   A++  +VMG            +   +F         L    +W G+       +++GY L  S +A+F RVGGG+YTKA D+
Sbjct:   30 EGTERMKEISSYIRSGADSFLAHETKAIFKVAIVIAILLMIFT-------------TWQTGV--------------AFLLGAVMSASAGIVGMKMATRANVRVAEAARTTKKIGPALKVAYQGGSVMGLSVGGFALLGLVLVYLIFGKWMGQVDNLNIYTNWLGINFVPFAMTVSGYALGCSIIAMFDRVGGGVYTKAADM 203          
The following BLAST results are available for this feature:
BLAST of FC878424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
HPPA_CHLAA2.926e-1330.22Pyrophosphate-energized proton pump OS=Chloroflexu... [more]
HPPA_PYRAE2.931e-1330.73Pyrophosphate-energized proton pump OS=Pyrobaculum... [more]
HPPA_NITEU2.935e-1328.73Pyrophosphate-energized proton pump OS=Nitrosomona... [more]
HPPA2_METMA4.101e-1331.67Pyrophosphate-energized proton pump 2 OS=Methanosa... [more]
HPPA2_RHOPA1.405e-1228.02Pyrophosphate-energized proton pump OS=Rhodopseudo... [more]
HPPA_THETN5.922e-1230.69Pyrophosphate-energized proton pump OS=Thermoanaer... [more]
AVPX_ARATH1.132e-1129.23Pyrophosphate-energized membrane proton pump 3 OS=... [more]
HPPA_THEMA6.547e-1129.35Pyrophosphate-energized proton pump OS=Thermotoga ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100AE04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA100AE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878424 ID=FC878424; Name=FC878424; organism=Citrus clementina; type=EST; length=829bp
ATTTTCAAGAAACAAAGTGATCATCAATAGTGAGTTCATTTATGGAAATG
GCTTCATGGAGTGAGGGGCATACACAAGTTCTGACACCCGCAGCTGCTTT
TATAGGAATTGGTTTTGCTTTGATTCTGTGGGTATTGGTCTCAAAGGTTA
AGATCTCAAATGGAGCTGGTAGCAATGGCGATGATGATAGGTTGATTGAA
GAAGAAGAGGCAGAGGAGGGTGTTGATAGCCTTGAGGCTGCCATCAAGTG
TGCTGAAATTCAAAATGCCATTTCTGTTGGGGCAACATCATTTTTGTTTC
CACAGTACAAGTACCTCAGTGTGGTCATGGGCGTATTCAGCACCATCATC
TTCCTTTTCCAAGGTTCGGTTAAGGGCTTCAGCACCAAACATGAACCCTG
CACATACAACACAGGGATTATGTGCAAACCAGCTCTTGTAAATGCTATTT
TTAGCACCATTGCTTTCTTGCTCGGAGCCCTTACTTCAACCCTCTCAGGT
TTTCTTGGCATGAAGATCACAACCTATGCAAATGCCAGAACAACTTTAGA
AGCAAGGAAAGGAGTCAGCAAGGCTTTTATTACAGCTTTCCGAGCTCGTG
CAGTGATGGGCTTGCTCCTTGCTGCCAATTGCCTTTTGGTGTTGTATGTC
TCCATCAATTTATTCAAACTCTATTATGATGATGACTGGGAGGGACTTTA
TGAATCTATTACTGGTTATGATTTAAGTGGCTCCTCAATGGCACTCTTTG
GAAGAGTTGGGGGAGGTATATATACAAAAGCAGTTGATGTANGAAGCTGA
CCTTGTAGGAAAAGTTGAGAGAAATATTC
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