FC878425
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878425 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2) HSP 1 Score: 139.428 bits (350), Expect = 2.533e-32 Identity = 81/214 (37.85%), Postives = 118/214 (55.14%), Query Frame = 1 Query: 223 LFTNIIDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNV--FSGFYGLVDM-VQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFS 852 L ++ + +H + P H +GNFAP+ DE P + V G LP+ L G ++R GPNP+ H+F+GDGM+H +++ G+A Y SRYVKT + K E G F + GF+GL+ + VQ + + ++L + G G ANT E+D PY+IK +GD++TLG D+D+ L S TAHPK D T E F F +S Sbjct: 29 LLERLVVKLMHDASLPLHYLSGNFAPIRDETPPVKDLPVHGFLPECLNGEFVRVGPNPKFDAVAGYHWFDGDGMIHGVRIKDGKATYVSRYVKTSRLKQEEFFGAAKFMKIGDLKGFFGLLMVNVQQLRTKLKIL----DNTYGNGTANTALVYHHGKLLALQEADKPYVIKVLEDGDLQTLGIIDYDKRLTHSFTAHPKVDPVTGEMFTFGYS 238
BLAST of FC878425 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 3.308e-32 Identity = 76/216 (35.19%), Postives = 110/216 (50.93%), Query Frame = 1 Query: 232 NIIDRP--LHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRA-IYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPH 870 N+++RP L + DP GNFAPV E P V G++P + G Y RNG NP P H F+GDGM+H++++ G A Y+ R+ +T + + ER G +FP +G + + AR G V+ G G+AN E DLPY ++ +GD+ET+GR+DFD +L +M AHPK D T E A + P+ Sbjct: 105 NVLERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGANPCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPY 320 The following BLAST results are available for this feature:
BLAST of FC878425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878425 ID=FC878425; Name=FC878425; organism=Citrus clementina; type=EST; length=877bpback to top |