FC878425

Overview
NameFC878425
Unique NameFC878425
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length877
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878425 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.533e-32
Identity = 81/214 (37.85%), Postives = 118/214 (55.14%), Query Frame = 1
Query:  223 LFTNIIDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNV--FSGFYGLVDM-VQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFS 852
            L   ++ + +H +  P H  +GNFAP+ DE  P +   V G LP+ L G ++R GPNP+       H+F+GDGM+H +++  G+A Y SRYVKT + K E   G   F  +    GF+GL+ + VQ + +  ++L    +   G G ANT             E+D PY+IK   +GD++TLG  D+D+ L  S TAHPK D  T E F F +S
Sbjct:   29 LLERLVVKLMHDASLPLHYLSGNFAPIRDETPPVKDLPVHGFLPECLNGEFVRVGPNPKFDAVAGYHWFDGDGMIHGVRIKDGKATYVSRYVKTSRLKQEEFFGAAKFMKIGDLKGFFGLLMVNVQQLRTKLKIL----DNTYGNGTANTALVYHHGKLLALQEADKPYVIKVLEDGDLQTLGIIDYDKRLTHSFTAHPKVDPVTGEMFTFGYS 238          
BLAST of FC878425 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 3.308e-32
Identity = 76/216 (35.19%), Postives = 110/216 (50.93%), Query Frame = 1
Query:  232 NIIDRP--LHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRA-IYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPH 870
            N+++RP  L  + DP     GNFAPV E  P     V G++P  + G Y RNG NP   P    H F+GDGM+H++++  G A  Y+ R+ +T + + ER  G  +FP      +G   + +     AR   G V+   G G+AN              E DLPY ++   +GD+ET+GR+DFD +L  +M AHPK D  T E  A  +     P+
Sbjct:  105 NVLERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGANPCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPY 320          
The following BLAST results are available for this feature:
BLAST of FC878425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CCD1_ARATH2.533e-3237.85Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
NCED1_MAIZE3.308e-3235.199-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DB08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DB08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878425 ID=FC878425; Name=FC878425; organism=Citrus clementina; type=EST; length=877bp
AAACATCATCCACTCTACATATCTACCAAAAGAATGGATCTCATGAATTA
CTTATCCTTAAAGATATCATACAATTCTCCACCAAAACCAAAGTTCACAT
ATTACAATCACATCAACGAACAAAATATCCCATTCCGTTCTTCTCAAAAG
CCAAAAATATGTGCACCCATACAATCTTTAATGGGAACAAATTCATCCTA
CAACACCAAATCCGCGCCATCATTGTTTACAAACATTATTGATCGTCCTC
TTCATCCTTCTGTTGATCCAAAGCATGTCTTCACCGGAAACTTTGCTCCG
GTGGACGAGCTTGGCCCGACTGAGTGCCCGGTGGTTGATGGCAAGCTTCC
GGACTCTCTAACCGGCACGTACATCCGAAACGGACCAAACCCACAGCACA
TGCCCCGTGGCCCTCTCCACTTCTTTGAAGGTGATGGCATGCTTCACTCA
ATGCAATTATCTAAAGGGCGTGCAATTTACAGTAGCCGCTATGTCAAGAC
TTACAAGTACAAGCTCGAGAGAGATGCCGGTGGCCAAATTTTCCCCAACG
TCTTCTCAGGATTTTATGGGCTTGTGGATATGGTTCAATGTGTTGCATCG
ACAGCAAGAGTGTTGATGGGTCACGTAAATCTCAAGAAAGGATTTGGTTT
GGCCAATACAAGTCTTGCTTTCTTTTCGTCTAAGCTTCTTGCTCTTGGTG
AGTCCGATTTGCCCTACATTATAAAATGTACTCGAGAAGGCGACATTGAG
ACTTTAGGGAGATGGGATTTTGATGAAGAATTATTTGCAAGCATGACTGC
GCATCCAAAGACAGACATGACCACAAAGGAGACTTTTGCTTTCAAATTTA
GCCCCTTTTTTTCCCCTCATNCTACAT
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