FC878459

Overview
NameFC878459
Unique NameFC878459
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length820
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878459 vs. ExPASy Swiss-Prot
Match: E2F1_CHICK (Transcription factor E2F1 OS=Gallus gallus GN=E2F1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.436e-18
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 3
Query:  531 ALTPAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKG 752
            A +P    RY++SL L TK+F+ L+  + DG++DLN AAE L+VQKRRIYDITNVLEGI LI KK KN I+W G
Sbjct:   96 AKSPGEKSRYETSLNLTTKRFLELLSQSPDGVVDLNWAAEVLKVQKRRIYDITNVLEGIQLITKKSKNNIQWLG 169          
BLAST of FC878459 vs. ExPASy Swiss-Prot
Match: E2F_DROME (Transcription factor E2f OS=Drosophila melanogaster GN=E2f PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.181e-18
Identity = 41/65 (63.08%), Postives = 56/65 (86.15%), Query Frame = 3
Query:  555 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWK 749
            R D+SLG+LTKKF++L++ + DG++DLN+A+  L VQKRRIYDITNVLEGI ++EKK KN I+W+
Sbjct:  254 RADTSLGILTKKFVDLLQESPDGVVDLNEASNRLHVQKRRIYDITNVLEGINILEKKSKNNIQWR 318          
BLAST of FC878459 vs. ExPASy Swiss-Prot
Match: E2F1_MOUSE (Transcription factor E2F1 OS=Mus musculus GN=E2f1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.154e-18
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 3
Query:  537 TPAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKG 752
            +P    RY++SL L TK+F+ L+  + DG++DLN AAE L+VQKRRIYDITNVLEGI LI KK KN I+W G
Sbjct:  116 SPGEKSRYETSLNLTTKRFLELLSRSADGVVDLNWAAEVLKVQKRRIYDITNVLEGIQLIAKKSKNHIQWLG 187          
BLAST of FC878459 vs. ExPASy Swiss-Prot
Match: E2F6_HUMAN (Transcription factor E2F6 OS=Homo sapiens GN=E2F6 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = 3
Query:  555 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDNSIPGEV 779
            R+D SL  LT+KF++L++ A  GILDLNK A  L V+KRR+YDITNVL+GI L+EKK KN IRW G D S  G V
Sbjct:   63 RFDVSLVYLTRKFMDLVRSAPGGILDLNKVATKLGVRKRRVYDITNVLDGIDLVEKKSKNHIRWIGSDLSNFGAV 137          
BLAST of FC878459 vs. ExPASy Swiss-Prot
Match: E2F6_BOVIN (Transcription factor E2F6 OS=Bos taurus GN=E2F6 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.693e-17
Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = 3
Query:  555 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLDNSIPGEV 779
            R+D SL  LT+KF++L++ A  GILDLNK A  L V+KRR+YDITNVL+GI L+EKK KN IRW G D S  G V
Sbjct:   63 RFDVSLVYLTRKFMDLVRSAPGGILDLNKVATKLGVRKRRVYDITNVLDGIDLVEKKSKNHIRWIGSDLSNFGAV 137          
BLAST of FC878459 vs. ExPASy Swiss-Prot
Match: E2F6_MOUSE (Transcription factor E2F6 OS=Mus musculus GN=E2f6 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.593e-17
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = 3
Query:  555 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGLD 758
            R+D SL  LT+KF++L++ A  GILDLNK A  L V+KRR+YDITNVL+GI L+EKK KN IRW G D
Sbjct:   63 RFDVSLVYLTRKFMDLVRSAPGGILDLNKVATKLSVRKRRVYDITNVLDGIELVEKKSKNHIRWIGSD 130          
The following BLAST results are available for this feature:
BLAST of FC878459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
E2F1_CHICK2.436e-1860.81Transcription factor E2F1 OS=Gallus gallus GN=E2F1... [more]
E2F_DROME3.181e-1863.08Transcription factor E2f OS=Drosophila melanogaste... [more]
E2F1_MOUSE4.154e-1861.11Transcription factor E2F1 OS=Mus musculus GN=E2f1 ... [more]
E2F6_HUMAN2.693e-1761.33Transcription factor E2F6 OS=Homo sapiens GN=E2F6 ... [more]
E2F6_BOVIN2.693e-1761.33Transcription factor E2F6 OS=Bos taurus GN=E2F6 PE... [more]
E2F6_MOUSE4.593e-1763.24Transcription factor E2F6 OS=Mus musculus GN=E2f6 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YP05RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YP05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878459 ID=FC878459; Name=FC878459; organism=Citrus clementina; type=EST; length=820bp
CCCTCCCTCTCTAGATCTTATTTCTCCCCAGTTTCTCATCCCACTTCCTC
TCTTTCTCTCATATTTTCGTTTTCTTCTCGCCATCTCTCATCCCAATGTC
CGGCGCATCCCGAGCCCCCTACCGAACCGCGCCGCCACCGCCAAATCCGC
CTCGTTCGGGGCCGATCGTCCCACCAATAAAGCGCCACCTTGCTTTTGTC
ACGACTAAGCCGCCTTTTGTTCCTTCCGATGATTACCATCGCTTCTCGAA
CACTCGCAGAGCCGCCGATCAGGAGCCTGAAGCAATTGTTGTTAGATCTC
CTCAATTAAAGAGGAAGAATGGAATGGAAGACAATGAGGTTGAGACCAGT
GAGTGGGTTGGCAGTCCTGGATTGACAAACATATCTAACGGTCCCTTCCA
CACACCTGTATCTGCAAAAGGGGGAAGGGTAAACAATAGGTCAAAGGGAA
TAAAGGGAAATAGATCGACTCCTCAGACACCAGTGTCGAATGCTAGTGAG
AAAATTTCTTATCATTTAGGTTCGCCTTCTGCTCTTACTCCAGCCGGCAG
CTGCCGTTATGACAGTTCCTTGGGTCTTCTAACAAAGAAGTTCATTAATC
TGATTAAGCATGCTGAAGACGGTATACTTGACCTGAATAAAGCTGCAGAA
ACTTTAGAGGTGCAAAAGAGGAGAATATACGACATAACAAATGTATTGGA
AGGAATTGGTCTGATTGAAAAGAAGCTCAAGAACAGAATACGTTGGAAGG
GACTTGATAATTCAATTCCAGGAGAGGTAGATGCCGATGCCTCCATATTA
CAGGCTGATATTGATAATCT
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