FC878494

Overview
NameFC878494
Unique NameFC878494
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length901
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878494 vs. ExPASy Swiss-Prot
Match: CAX3_ORYSJ (Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 7.463e-27
Identity = 78/192 (40.62%), Postives = 104/192 (54.17%), Query Frame = 1
Query:  286 LANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITAKAT-LQLSRASSIVMLIGYIAYLVFQL 858
            L +I+ VI  +KL++L P  P +II          VF  S+LG+TPLAER+ + TEQ+A YTGPTVGGLLNAT GNATE+IIAI+AL    I VV+                   F GGI +  K+Q + +  A VNS                 +    S++   A+ + LSR SS +ML+ Y +YL FQL
Sbjct:   41 LRSIRIVIFTSKLNLLLPFGPASIILHYTTSRHGLVFLFSMLGITPLAERLGYATEQLAIYTGPTVGGLLNATFGNATEMIIAIYALKNGMIRVVQQSLLGSILSNMLLVMGCAFFAGGIVHRNKDQVFSKATAVVNSGLLLMAVMGLMFPAVLHF--THSEVRQGASEVSLSRFSSCIMLVAYASYLYFQL 230          
BLAST of FC878494 vs. ExPASy Swiss-Prot
Match: CAX4_ORYSJ (Putative vacuolar cation/proton exchanger 4 OS=Oryza sativa subsp. japonica GN=Os02g0138900 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.968e-19
Identity = 71/194 (36.60%), Postives = 93/194 (47.94%), Query Frame = 1
Query:  304 VILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITAKATLQLSRASSIVMLIGYIAYLVFQLWTHREFFEA 885
            V L +KL+VL P   LAI          WVF LS+LG+ PLAER+ F T+   +     VG LLN+  GNATELII+I AL   K+ VV+                   F GG+A  +  Q + +  A VNS                 Y  + +    K+ L LSR SS +ML+ Y +YL FQL  +R   EA
Sbjct:   67 VFLKSKLNVLIPCGFLAIFLNYMTQRYGWVFPLSMLGIIPLAERLGFATD---WQISCEVGRLLNSAFGNATELIISIHALSRGKLHVVQQCLLGSILSNLLLVLGSAFFSGGLACGKTMQTFSKADAVVNSGLLLMAVMGLLIPAALHYTHSEAQF-GKSELALSRFSSCIMLVAYASYLYFQLSNNRRRNEA 256          
BLAST of FC878494 vs. ExPASy Swiss-Prot
Match: VCX1_YEAST (Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae GN=VCX1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.361e-17
Identity = 63/210 (30.00%), Postives = 100/210 (47.62%), Query Frame = 1
Query:  277 RRCLANIQEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFK----YAAASSDITAKATLQLSRASSIVMLIGYIAYLVFQLWTHREFFEAQED 894
            R  + ++Q ++  + L+ L   +PL +I   F  +    F  + L + PLA  ++  TE++A   G T+GGLLNAT GNA ELI++I AL + ++ +V+                     GG    R +Q +++  A   S               F+    +      I  K  L+LSR +SIV+LI Y+ +L FQL +H   FE QE+
Sbjct:   25 RAAVYDLQYILKASPLNFLLVFVPLGLIWGHFQLSHTLTFLFNFLAIIPLAAILANATEELADKAGNTIGGLLNATFGNAVELIVSIIALKKGQVRIVQASMLGSLLSNLLLVLGLCFIFGGYN--RVQQTFNQTAAQTMSSLLAIACASLLIPAAFRATLPHGKEDHFIDGK-ILELSRGTSIVILIVYVLFLYFQLGSHHALFEQQEE 231          
BLAST of FC878494 vs. ExPASy Swiss-Prot
Match: VCX1_SCHPO (Vacuolar calcium ion transporter OS=Schizosaccharomyces pombe GN=vcx1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.741e-16
Identity = 53/191 (27.75%), Postives = 93/191 (48.69%), Query Frame = 1
Query:  298 QEVILGTKLSVLFPAIPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITAKATLQLSRASSIVMLIGYIAYLVFQLWTHR 870
            + V++ +  +++   +P+ +I   F +    VF L++L + PLA  +SF TEQ++  +GPT+G LLNA+ GNA ELI+ + AL   ++ +V+                      GI   R+   ++   A                   F Y+   +  +  A L +SR +++++LI Y+  LVFQL TH+
Sbjct:   54 KSVLMSSYFNLMLVFVPIGLIAGWFEWNAKSVFILNMLAIIPLASLLSFATEQLSIISGPTLGALLNASFGNAIELIVGVLALKRGELRIVQSSLLGSILSNLLLVFGMCLVTTGIR--REITTFNITVAQTMIAMLALSTATILIPATFHYSLPDNANSENALLHVSRGTAVIVLIVYVLLLVFQLKTHK 242          
BLAST of FC878494 vs. ExPASy Swiss-Prot
Match: YFKE_BACSU (Putative cation exchanger yfkE OS=Bacillus subtilis GN=yfkE PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.753e-13
Identity = 54/181 (29.83%), Postives = 83/181 (45.86%), Query Frame = 1
Query:  343 IPLAIIGQCFGFAEPWVFALSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITAKAT-LQLSRASSIVMLIGYIAYLVFQLWTHREFFE 882
            +PL++IG    +    +FA+  + +  LA  +   TE ++   GP +GGLLNAT GNA ELII++FAL E    +V                    F GG+       KY R++ +++                F      S     A+ L LS   SI+M++ Y+A L F+L THR  ++
Sbjct:   13 VPLSVIGSLMHWPSAVLFAVYCVTIIALASYMGRATESLSIIAGPRIGGLLNATFGNAVELIISLFALKEGLTGIVLASLTGSVLGNLLLVAGLSFFVGGL-------KYKRQEFNIHDARHNSGLLIFAIIVAFVIPEVFSVGMGNASKLNLSIGISIIMILLYVAALYFKLVTHRGVYQ 186          
The following BLAST results are available for this feature:
BLAST of FC878494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CAX3_ORYSJ7.463e-2740.63Vacuolar cation/proton exchanger 3 OS=Oryza sativa... [more]
CAX4_ORYSJ1.968e-1936.60Putative vacuolar cation/proton exchanger 4 OS=Ory... [more]
VCX1_YEAST5.361e-1730.00Vacuolar calcium ion transporter OS=Saccharomyces ... [more]
VCX1_SCHPO7.741e-1627.75Vacuolar calcium ion transporter OS=Schizosaccharo... [more]
YFKE_BACSU2.753e-1329.83Putative cation exchanger yfkE OS=Bacillus subtili... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA56DA08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA56DA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878494 ID=FC878494; Name=FC878494; organism=Citrus clementina; type=EST; length=901bp
CTGAAACAAAATTTTCTCTCTCAATCAATCTTTAATCAAAATATATATAT
ATATATTTTTTATTATTAATTGTTTCTATCCTTCGTGTTTTTTTTTTCTT
TCAATTGCATTTGTGAAAAAATGGCTTCGACTGAACCATGGCTGATGGAG
AATGGCAGCGTGAAGGTTTTGAGCAAGGAGATCAGACATGGAAGAACTGC
ACACAACATGTCATCCTCCTCGTTGAGGAAAAAATCCGATCTTACCCTTG
TCTCGAAAATTCGATTCCCTTGTCTTAGACGGTGTCTGGCTAATATCCAG
GAGGTCATTTTGGGGACTAAACTTTCAGTTCTCTTTCCCGCCATTCCTTT
AGCCATAATCGGCCAGTGTTTTGGATTTGCAGAACCATGGGTATTCGCTC
TGAGCTTACTAGGACTGACTCCTCTGGCTGAACGTGTCAGCTTCTTGACA
GAGCAAATTGCTTTCTACACTGGCCCAACAGTGGGGGGATTATTGAACGC
GACATGCGGCAATGCCACGGAGCTCATCATAGCAATTTTTGCCCTATACG
AACGTAAAATTGACGTGGTCAAATATTCTCTTTTGGGTTCCATTCTCTCA
AACCTTCTTCTGGTTCTTGGCACTTCGCTCTTCTGTGGAGGGATTGCCAA
TCTCAGAAAGGAACAAAAATACGATAGAAAACAAGCCGATGTCAACTCGC
TGCTGCTGCTGCTGGCATTGCTGTGCCACATGTTACCATTGCTATTCAAA
TACGCTGCGGCCTCCTCTGATATTACTGCCAAGGCGACCCTTCAGCTATC
AAGAGCCAGCAGCATTGTAATGCTGATTGGTTACATCGCCTATCTCGTCT
TCCAATTGTGGACACACCGGGAATTTTTTGAAGCTCAAGAGGATTCAAAA
G
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