FC878498

Overview
NameFC878498
Unique NameFC878498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length876
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878498 vs. ExPASy Swiss-Prot
Match: GUN24_ORYSJ (Endoglucanase 24 OS=Oryza sativa subsp. japonica GN=Os09g0533900 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.384e-59
Identity = 112/248 (45.16%), Postives = 159/248 (64.11%), Query Frame = 3
Query:  138 YGDALSKSLLYFESQRSGRLPHNQRVTWRHHSGLTDGLEQGVDLVGGYYDAGDNVKFGLPMAFTITMLSWGVIQYGGEISDAGEHHHAIEAIKWGTDYFIKAHTHPHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYV-LDNADRF---GGITW 869
            YGDAL  +L +F+ Q++G+L +NQ + WR  S L DG   G+DL  G YDAGD++KF  PMAFT T+LSW +++YG ++S   +   A++A++W TD+ + AH   +V +++VGD D DH CW+RPE M+  R   +++ ++PGSDVA E        SIVF+  +  YS  LL HAQ+LF F D Y+G    +   ++ YY S +GY DELLWAA WLY AT ++ YL YV ++N   F   G  TW
Sbjct:   58 YGDALGVALQFFQVQKAGKLENNQ-IPWRGDSALDDGKPAGLDLSKGMYDAGDHIKFSFPMAFTATVLSWSILEYGDQMSATKQLDPALDALRWITDFLVNAHPSDNVFYIQVGDPDLDHNCWERPETMSEKRPLTQINTKSPGSDVAAEAAAAMASASIVFKSRDTTYSDSLLQHAQKLFTFADTYKGLASDTYPKLQNYYNS-TGYQDELLWAASWLYHATGDQTYLSYVTVENGKAFADWGRPTW 303          
BLAST of FC878498 vs. ExPASy Swiss-Prot
Match: GUN18_ORYSJ (Endoglucanase 18 OS=Oryza sativa subsp. japonica GN=Os06g0715300 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.384e-59
Identity = 110/231 (47.62%), Postives = 147/231 (63.64%), Query Frame = 3
Query:  138 YGDALSKSLLYFESQRSGRLPHNQRVTWRHHSGLTDGLEQGVDLVGGYYDAGDNVKFGLPMAFTITMLSWGVIQYGGEISDAGEHHHAIEAIKWGTDYFIKAHTHPHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKY 830
            Y DAL+ +L +F+ Q+SG+L +N  + WR  S L DG E G+DL  G YDAGD++KFG PMAFT TMLSW V++YG  +  A +   AI+A+ W  DY + AH    VL+++VGD   DH CW+RPE M   R   K+  ++PGSDVA ET       S+V++ +N  YS  LL H ++LF F DK+RG Y  +   +  +Y S + Y DELLWAA WLY AT N +YL Y
Sbjct:   50 YADALAVALQFFQVQKSGKLVNNT-IHWRGDSALDDGKEAGIDLSKGMYDAGDHMKFGFPMAFTATMLSWSVLEYGDAMRAADQRDSAIDALNWIMDYLVNAHPSDDVLYIQVGDPKADHKCWERPEKMKEKRPLTKITPKSPGSDVAAETAAAMAAASLVYKTINKTYSSSLLDHGERLFAFADKHRGSYTRTFPELSAFYNSTT-YQDELLWAASWLYHATGNHSYLAY 278          
BLAST of FC878498 vs. ExPASy Swiss-Prot
Match: GUNZ_CLOSR (Endoglucanase Z OS=Clostridium stercorarium GN=celZ PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.954e-57
Identity = 112/257 (43.58%), Postives = 154/257 (59.92%), Query Frame = 3
Query:   81 FYMMALTLPLIVQ---CHD------SFNYGDALSKSLLYFESQRSGRLPHNQRVTWRHHSGLTDGLEQGVDLVGGYYDAGDNVKFGLPMAFTITMLSWGVIQYGGEISDAGEHHHAIEAIKWGTDYFIKAHTHPHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYL 824
            FY  A+ + L+V     H        +NYG+AL K+++++E QRSG+LP N+R  WR  SGL DG + G+DL GG+YDAGD+VKF LPMA++ TML+W   +    +  +G+  + ++AIKW +DY IK H  P+V + +VGDG  DH  W   E M   R AYKVD  NPGS V  E        ++VF   +P Y+   + HA++L+ F +    K DS      G+Y S SG+ DEL WA VWLY AT +E YL
Sbjct:    4 FYSFAIIISLLVTGLFIHTPKAEAAGYNYGEALQKAIMFYEFQRSGKLPENKRDNWRGDSGLNDGADVGLDLTGGWYDAGDHVKFNLPMAYSQTMLAWAAYEAEEALERSGQMGYLLDAIKWVSDYLIKCHPSPNVFYYQVGDGHLDHSWWGPAEVMQMDRPAYKVDLANPGSTVVAEAAAALASAAVVFADRDPAYAATCIQHAKELYNFAE--ITKSDSGYTAASGFYDSHSGFYDELSWAGVWLYLATGDETYL 258          
BLAST of FC878498 vs. ExPASy Swiss-Prot
Match: GUNA_CALSA (Endoglucanase A OS=Caldocellum saccharolyticum GN=celA PE=3 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.792e-54
Identity = 105/232 (45.26%), Postives = 141/232 (60.78%), Query Frame = 3
Query:  129 SFNYGDALSKSLLYFESQRSGRLPHNQRVTWRHHSGLTDGLEQGVDLVGGYYDAGDNVKFGLPMAFTITMLSWGVIQYGGEISDAGEHHHAIEAIKWGTDYFIKAHTHPHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYL 824
            SFNYG+AL K+++++E Q SG+LP+  R  WR  S L DG + G+DL GG++DAGD+VKF LPM++T TMLSW   +Y      +G+  H +  I+W  DYF+K H   +V + +VGDG  DH  W   E M   R ++KV + +PGS V  ET       SIV +  NP  +   L HA+ L+EF +    K DS      GYY S SG+ DEL WAAVWLY AT++  YL
Sbjct:   25 SFNYGEALQKAIMFYEFQMSGKLPNWVRNNWRGDSALKDGQDNGLDLTGGWFDAGDHVKFNLPMSYTGTMLSWAAYEYKDAFVKSGQLEHILNQIEWVNDYFVKCHPSKYVYYYQVGDGGKDHAWWGPAEVMQMERPSFKVTQSSPGSAVVAETAASLAAASIVLKDRNPTKAATYLQHAKDLYEFAEV--TKSDSGYTAANGYYNSWSGFYDELSWAAVWLYLATNDSTYL 254          
BLAST of FC878498 vs. ExPASy Swiss-Prot
Match: GUNG_CLOCE (Endoglucanase G OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=celCCG PE=1 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 2.588e-53
Identity = 101/232 (43.53%), Postives = 142/232 (61.21%), Query Frame = 3
Query:  129 SFNYGDALSKSLLYFESQRSGRLPHNQRVTWRHHSGLTDGLEQGVDLVGGYYDAGDNVKFGLPMAFTITMLSWGVIQYGGEISDAGEHHHAIEAIKWGTDYFIKAHTHPHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYL 824
            ++NYG+AL KS++++E QRSG LP ++R  WR  SG+ DG + GVDL GG+YDAGD+VKF LPM++T  ML+W + +       +G+  + ++ IKW  DYFIK +  P V + +VGDG  DH  W   E M   R ++KVD   PGS V   T       ++VF+  +P Y+   + HA+ LF+  DK   K D+      GYY S S + D+L WAAVWLY AT++  YL
Sbjct:   38 TYNYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVKFNLPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGDGGKDHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAKNLFDMADK--AKSDAGYTAASGYYSS-SSFYDDLSWAAVWLYLATNDSTYL 266          
BLAST of FC878498 vs. ExPASy Swiss-Prot
Match: GUN6_DICDI (Endoglucanase OS=Dictyostelium discoideum GN=celA PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.569e-50
Identity = 105/251 (41.83%), Postives = 144/251 (57.37%), Query Frame = 3
Query:  135 NYGDALSKSLLYFESQRSGRLPHNQRVTWRHHSGLTDGLEQGV-------DLVGGYYDAGDNVKFGLPMAFTITMLSWGVIQYGGEISDAGEHHHAIEAIKWGTDYFIKAHTHPHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYL-KYVLDNADRFGGI 863
            +Y   L  +L++++  R+GRLP N  + WR +S L D             +L GGY+DAGD VKFGLPMA+++TML W  I+Y   I+  G     ++ IK+GTD+ I AHT  +    +VGDG+ DH  W  PEDMT +R  Y +    PG+++A E        SI F+  NP Y+   L HA+ L  FG  YRG Y  SI   + +Y S SGY D+L+W ++WLYKAT +  YL K V D A   GG+
Sbjct:   26 DYCSLLENALMFYKMNRAGRLPDND-IPWRGNSALNDASPNSAKDANGDGNLSGGYFDAGDGVKFGLPMAYSMTMLGWSFIEYESNIAQCGLTSLYLDTIKYGTDWLIAAHTADNEFAGQVGDGNVDHSWWGPPEDMTMARPTYMLTTEAPGTEIAMEAASALAAASIAFKSSNPTYAATCLAHAKTLHNFGYTYRGVYSDSITNAQAFYNSWSGYKDDLVWGSIWLYKATQDSDYLTKAVADYAS--GGV 273          
BLAST of FC878498 vs. ExPASy Swiss-Prot
Match: GUN25_ARATH (Endoglucanase 25 OS=Arabidopsis thaliana GN=KOR PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 9.526e-48
Identity = 113/250 (45.20%), Postives = 141/250 (56.40%), Query Frame = 3
Query:  135 NYGDALSKSLLYFESQRSGRLPHNQRVTWRHHSGLTDGL-EQGV---DLVGGYYDAGDNVKFGLPMAFTITMLSWGVIQYGGEISDAGEHHHAIEAIKWGTDYFIKAHTHP----HVLWVEVGDGDT--------DHYCWQRPEDMTTSRRAYKVDERNPG-SDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYV 833
            NY  AL K+L +F +Q+SG+LP +  V+WR +SGL DG  E G    DLVGGYYDAGD +KF  PMA+ +TMLSW VI+Y  +   AGE  H  E IKWGTDYF+K           L  +VG G+T        DHYCW RPEDM   R    V   N G SD+A E        SIVF K N  YS  L+H A+ +++FG   RG+Y +       +Y S S Y DE +W   W+Y AT N  YL  +
Sbjct:  108 NYTIALHKALKFFNAQKSGKLPKHNNVSWRGNSGLQDGKGETGSFYKDLVGGYYDAGDAIKFNFPMAYAMTMLSWSVIEYSAKYEAAGELTHVKELIKWGTDYFLKTFNSTADSIDDLVSQVGSGNTDDGNTDPNDHYCWMRPEDMDYKR---PVTTCNGGCSDLAAEMAAALASASIVF-KDNKEYSKKLVHGAKVVYQFGRTRRGRYSAGTAESSKFYNS-SMYWDEFIWGGAWMYYATGNVTYLNLI 352          
BLAST of FC878498 vs. ExPASy Swiss-Prot
Match: GUN12_ORYSJ (Endoglucanase 12 OS=Oryza sativa subsp. japonica GN=GLU3 PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.244e-47
Identity = 114/296 (38.51%), Postives = 157/296 (53.04%), Query Frame = 3
Query:   30 CVVVKQPKYFQISFGLLFYMMALTLPLIV---------QCHDSFNYGDALSKSLLYFESQRSGRLPHNQRVTWRHHSGLTDGLE----QGVDLVGGYYDAGDNVKFGLPMAFTITMLSWGVIQYGGEISDAGEHHHAIEAIKWGTDYFI-----------KAHTHPHVLWVEVGDGDTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEF--GDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYVLD 839
            CVVVK+   + + + LL   + + LP+I+                Y DAL K+LL+F +Q+SGRLP N  + WR +SGL+DG +    +G  LVGGYYDAGDN+KF  P+AF++TMLSW VI+Y  +    GE+ H  E IKWGTDY +           K ++   +  +  G    DHYCW RPEDM   R    V       D+ GE        SIVFR  N  YS  L++ A  +++F      R  Y    + ++ YY S S Y DE +W+A W+Y AT N  Y+ +  D
Sbjct:   66 CVVVKRKLLWWVLWTLLAAFILIGLPVIIAKSIPKKKPHAPPPDQYTDALHKALLFFNAQKSGRLPKNNGIKWRGNSGLSDGSDLTDVKG-GLVGGYYDAGDNIKFHFPLAFSMTMLSWSVIEYSAKYKAVGEYDHVRELIKWGTDYLLLTFNSSASTIDKVYSQVGIAKIN-GTQPDDHYCWNRPEDMAYPR---PVQTAGSAPDLGGEMAAALAAASIVFRD-NAAYSKKLVNGAAAVYKFARSSGRRTPYSRGNQYIEYYYNSTS-YWDEYMWSAAWMYYATGNNTYITFATD 354          
BLAST of FC878498 vs. ExPASy Swiss-Prot
Match: GUN9_ORYSJ (Endoglucanase 9 OS=Oryza sativa subsp. japonica GN=GLU1 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.425e-45
Identity = 107/243 (44.03%), Postives = 138/243 (56.79%), Query Frame = 3
Query:  147 ALSKSLLYFESQRSGRLPHNQRVTWRHHSGLTDGLEQ---GVDLVGGYYDAGDNVKFGLPMAFTITMLSWGVIQYGGEISDAGEHHHAIEAIKWGTDYFIK-----AHTHPHVLWVEVGDGDT--------DHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLK 827
            AL K+L++F +Q+SG+LP N  V WR +S + DGL     G  LVGGYYDAGD VKF  P AF++T+LSW VI+Y  +    GE  H  + IKWG DYF+K     A T   V+ ++VG G T        DHYCW RPED+   R    V E +  SD+A E        SIVF K N  YS  L+H A  LF+F  + RG+Y +       +Y S S Y DE +W   W+Y AT N +YL+
Sbjct:  115 ALRKALMFFNAQKSGKLPKNNNVHWRGNSCMKDGLSDPAVGRSLVGGYYDAGDAVKFNFPAAFSMTLLSWSVIEYSAKYEAVGELGHIRDTIKWGADYFLKTFNSTADTIDRVV-MQVGSGATSPGSTQPNDHYCWMRPEDIDYPR---PVVECHACSDLAAEMAASLAAASIVF-KDNKAYSQKLVHGATTLFKFARQNRGRYSAGGSDAAKFYNSTS-YWDEFVWGGSWMYLATGNSSYLQ 351          
BLAST of FC878498 vs. ExPASy Swiss-Prot
Match: GUN21_ARATH (Endoglucanase 21 OS=Arabidopsis thaliana GN=KOR3 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.090e-43
Identity = 107/250 (42.80%), Postives = 138/250 (55.20%), Query Frame = 3
Query:  135 NYGDALSKSLLYFESQRSGRLPHN-QRVTWRHHSGLTDGLEQG----VDLVGGYYDAGDNVKFGLPMAFTITMLSWGVIQYGGEISDAGEHHHAIEAIKWGTDYFIKAHT----HPHVLWVEVGDG--------DTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYV 833
            NY  AL  +L +F +Q+SG+LP N   V+WRH S L DG         DLVGGYYDAGD++KF  PM++ +TMLSW VI+Y  +   AGE  H  E IKWGTDYF+K       + +V+  +VG G          DHYCW RPED+   R   +    +  SD+A E        SIVF K N  YS  L+H A+ L+ F    R +Y  + +    +Y S S + DELLW   WLY AT N  YL+ V
Sbjct:  108 NYTIALRTALKFFNAQQSGKLPKNIYNVSWRHDSCLQDGKGDPGQCYKDLVGGYYDAGDSIKFNFPMSYAMTMLSWSVIEYSAKYQAAGELEHVKELIKWGTDYFLKTFNSSADNIYVMVEQVGSGVSGRGSELHNDHYCWMRPEDIHYKRTVSQC--YSSCSDLAAEMAAALASASIVF-KDNRLYSKNLVHGAKTLYRFATTSRNRYSQNGKESSKFYNS-SMFEDELLWGGAWLYYATGNVTYLERV 353          
The following BLAST results are available for this feature:
BLAST of FC878498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
GUN24_ORYSJ5.384e-5945.16Endoglucanase 24 OS=Oryza sativa subsp. japonica G... [more]
GUN18_ORYSJ5.384e-5947.62Endoglucanase 18 OS=Oryza sativa subsp. japonica G... [more]
GUNZ_CLOSR2.954e-5743.58Endoglucanase Z OS=Clostridium stercorarium GN=cel... [more]
GUNA_CALSA1.792e-5445.26Endoglucanase A OS=Caldocellum saccharolyticum GN=... [more]
GUNG_CLOCE2.588e-5343.53Endoglucanase G OS=Clostridium cellulolyticum (str... [more]
GUN6_DICDI4.569e-5041.83Endoglucanase OS=Dictyostelium discoideum GN=celA ... [more]
GUN25_ARATH9.526e-4845.20Endoglucanase 25 OS=Arabidopsis thaliana GN=KOR PE... [more]
GUN12_ORYSJ1.244e-4738.51Endoglucanase 12 OS=Oryza sativa subsp. japonica G... [more]
GUN9_ORYSJ4.425e-4544.03Endoglucanase 9 OS=Oryza sativa subsp. japonica GN... [more]
GUN21_ARATH1.090e-4342.80Endoglucanase 21 OS=Arabidopsis thaliana GN=KOR3 P... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA56DA09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA56DA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878498 ID=FC878498; Name=FC878498; organism=Citrus clementina; type=EST; length=876bp
TAGAAATGGAGGAGAAAAGACAAGAGCAGTGCGTGGTGGTGAAGCAACCA
AAATATTTCCAAATTTCATTTGGTTTATTATTTTACATGATGGCTCTGAC
CTTACCCCTAATAGTACAATGTCATGACTCCTTCAACTACGGCGATGCTC
TCTCCAAGAGTCTCCTCTACTTCGAATCACAACGCTCCGGCCGGTTGCCG
CACAACCAAAGAGTCACCTGGCGCCACCACTCCGGCCTCACCGACGGCCT
AGAACAAGGAGTGGACTTGGTGGGAGGGTACTATGATGCTGGTGACAATG
TGAAGTTTGGTTTGCCAATGGCATTTACTATAACAATGCTCTCCTGGGGA
GTTATTCAGTATGGTGGAGAAATTTCCGACGCTGGCGAGCATCATCATGC
AATTGAGGCCATCAAGTGGGGAACTGATTATTTCATCAAAGCTCACACTC
ACCCTCATGTATTATGGGTTGAGGTGGGTGATGGAGACACCGATCACTAC
TGTTGGCAGCGGCCGGAAGACATGACGACGTCGCGGCGTGCTTACAAAGT
AGACGAGAGAAACCCCGGCTCGGATGTCGCCGGAGAGACGGCAGCGGCAA
TGGCGGCAGCATCAATTGTGTTTAGGAAACTAAACCCACATTACTCTCAC
CTACTATTGCACCACGCGCAACAGTTGTTTGAGTTTGGTGACAAGTACAG
AGGGAAATACGACAGTAGTATAGAGGTAGTGAAGGGGTACTATCCGTCGG
TTAGTGGATACATGGACGAGTTGTTATGGGCGGCTGTGTGGCTATACAAG
GCAACCGACAACGAGGCGTATTTGAAGTACGTGCTTGATAATGCCGATCG
TTTTGGTGGGATCACTTGGGCCATTA
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