FC878498

Overview
NameFC878498
Unique NameFC878498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length876
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878498 vs. ExPASy Swiss-Prot
Match: GUN10_ORYSJ (Endoglucanase 10 OS=Oryza sativa subsp. japonica GN=GLU2 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.171e-43
Identity = 111/273 (40.66%), Postives = 146/273 (53.48%), Query Frame = 3
Query:  138 YGDALSKSLLYFESQRSGRLPHNQRVTWRHHSGLTDGLEQGV---DLVGGYYDAGDNVKFGLPMAFTITMLSWGVIQYGGEISDAGEHHHAIEAIKWGTDYFIK-----AHTHPHVLWVEVGDGDT--------DHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLK-------------YVLDNADRFGGITW 869
            Y  AL K+L++F +QRSG LP +  V+WR +S + DGL        LVGG+YDAGD +KF  PMA+++TMLSW VI+Y  +    GE  H  E IKWGTDY +K     A T   ++  +VG GDT        DHYCW RPED+   R    V E +  SD+A E        SIVF K +  YS  L+  A+ L++FG   RG+Y  +      +Y S S Y DE +W   W+Y AT N  YL              Y LD+ + +G  TW
Sbjct:  110 YTQALHKALMFFNAQRSGPLPKHNGVSWRGNSCMKDGLSDSTVRKSLVGGFYDAGDAIKFNYPMAWSMTMLSWSVIEYKAKYEAIGELDHVKELIKWGTDYLLKTFNSSADTIDRIV-AQVGVGDTSKGGAQPNDHYCWMRPEDIDYPR---PVTECHSCSDLASEMAAALAAASIVF-KDSKTYSDKLVRGAKALYKFGRLQRGRYSPNGSDQAIFYNSTS-YWDEFVWGGAWMYFATGNNTYLSVATAPGMAKHAGAYWLDSPN-YGVFTW 375          
BLAST of FC878498 vs. ExPASy Swiss-Prot
Match: GUN7_ARATH (Endoglucanase 7 OS=Arabidopsis thaliana GN=KOR2 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.128e-40
Identity = 103/275 (37.45%), Postives = 145/275 (52.73%), Query Frame = 3
Query:   66 SFGLLFYMMALTLPLIVQC--HDSF-----NYGDALSKSLLYFESQRSGRLPHNQRVTWRHHSGLTDGLEQGVD-LVGGYYDAGDNVKFGLPMAFTITMLSWGVIQYGGEISDAGEHHHAIEAIKWGTDY----FIKAHTHPHVLWVEVGDG------DTDHYCWQRPEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEF--GDKYRGKYDSSIEVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKY 830
            S  +LF ++AL + ++     H S      NY  AL K+L +F++Q+SG+LP   +V+WR  SG  DGL   V  LVGGYYD G NVKF  PMAF++TMLSW +I+Y  +     E+ H  + +KWGTDY    F  + T    ++ +VG G        D YCWQ+PEDM+  R    V      +D+  E        SIVF    P Y+  L   A+ L+ F      R +Y       + +Y S S + DE +WA  WLY AT N+ Y+++
Sbjct:   86 SIAVLFLVVALPIIIVKSLPRHKSAPPPPDNYTLALHKALQFFDAQKSGKLPKKNKVSWRGDSGTKDGLPDVVGGLVGGYYDGGSNVKFHFPMAFSMTMLSWSLIEYSHKYKAIDEYDHMRDVLKWGTDYLLLTFNNSATRLDHIYTQVGGGLRDSESPDDIYCWQKPEDMSYDR---PVLSSTSAADLGAEVSAALAAASIVFTD-KPDYAKKLKKGAETLYPFFRSKSRRKRYSDGQPTAQAFYNSTSMF-DEFMWAGAWLYYATGNKTYIQF 355          
BLAST of FC878498 vs. ExPASy Swiss-Prot
Match: GUNX_PRUPE (Endoglucanase CX (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.283e-25
Identity = 58/116 (50.00%), Postives = 73/116 (62.93%), Query Frame = 3
Query:  513 PEDMTTSRRAYKVDERNPGSDVAGETXXXXXXXSIVFRKLNPHYSHLLLHHAQQLFEFGDKYRGKYDSSI-EVVKGYYPSVSGYMDELLWAAVWLYKATDNEAYLKYVLDNADRFG 857
            PEDM T R  YKV  +NPGSDVA ET       SIVF+  +P YS  LLH A ++F+F D+YRG Y  SI  VV  +Y S SG+ DELLW A W+++A+ N +YL Y+  N    G
Sbjct:    1 PEDMDTPRNVYKVSTQNPGSDVAAETAAALAAASIVFKDSDPSYSGKLLHTAMKVFDFADRYRGSYSDSIGSVVCPFYCSYSGHHDELLWGASWIHRASQNRSYLVYIKSNGHILG 116          
The following BLAST results are available for this feature:
BLAST of FC878498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
GUN10_ORYSJ3.171e-4340.66Endoglucanase 10 OS=Oryza sativa subsp. japonica G... [more]
GUN7_ARATH1.128e-4037.45Endoglucanase 7 OS=Arabidopsis thaliana GN=KOR2 PE... [more]
GUNX_PRUPE2.283e-2550.00Endoglucanase CX (Fragment) OS=Prunus persica PE=2... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA56DA09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA56DA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878498 ID=FC878498; Name=FC878498; organism=Citrus clementina; type=EST; length=876bp
TAGAAATGGAGGAGAAAAGACAAGAGCAGTGCGTGGTGGTGAAGCAACCA
AAATATTTCCAAATTTCATTTGGTTTATTATTTTACATGATGGCTCTGAC
CTTACCCCTAATAGTACAATGTCATGACTCCTTCAACTACGGCGATGCTC
TCTCCAAGAGTCTCCTCTACTTCGAATCACAACGCTCCGGCCGGTTGCCG
CACAACCAAAGAGTCACCTGGCGCCACCACTCCGGCCTCACCGACGGCCT
AGAACAAGGAGTGGACTTGGTGGGAGGGTACTATGATGCTGGTGACAATG
TGAAGTTTGGTTTGCCAATGGCATTTACTATAACAATGCTCTCCTGGGGA
GTTATTCAGTATGGTGGAGAAATTTCCGACGCTGGCGAGCATCATCATGC
AATTGAGGCCATCAAGTGGGGAACTGATTATTTCATCAAAGCTCACACTC
ACCCTCATGTATTATGGGTTGAGGTGGGTGATGGAGACACCGATCACTAC
TGTTGGCAGCGGCCGGAAGACATGACGACGTCGCGGCGTGCTTACAAAGT
AGACGAGAGAAACCCCGGCTCGGATGTCGCCGGAGAGACGGCAGCGGCAA
TGGCGGCAGCATCAATTGTGTTTAGGAAACTAAACCCACATTACTCTCAC
CTACTATTGCACCACGCGCAACAGTTGTTTGAGTTTGGTGACAAGTACAG
AGGGAAATACGACAGTAGTATAGAGGTAGTGAAGGGGTACTATCCGTCGG
TTAGTGGATACATGGACGAGTTGTTATGGGCGGCTGTGTGGCTATACAAG
GCAACCGACAACGAGGCGTATTTGAAGTACGTGCTTGATAATGCCGATCG
TTTTGGTGGGATCACTTGGGCCATTA
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