FC878501

Overview
NameFC878501
Unique NameFC878501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length872
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK17_MOUSE (Cell division protein kinase 17 OS=Mus musculus GN=Cdk17 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 1.129e-16
Identity = 61/142 (42.96%), Postives = 90/142 (63.38%), Query Frame = 3
Query:    6 VYKGR-RLSDNLIVALKEVH-DYQ-----SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VYKGR +L++NL VALKE+  +++     +A RE+  L+ L+++ N+V LH+     D+   LV E+L  DL       K+  +D G+  +S+  +K ++ QIL G+  CHR  ++HRDLKP NLLI + G LKLADFG AR
Sbjct:  206 VYKGRSKLTENL-VALKEIRLEHEEGAPCTAIREVSLLKDLKHA-NIVTLHDIV-HTDKSLTLVFEYLDKDL-------KQYMDDCGNI-MSMHNVKLFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLAR 336          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: PHO85_DEBHA (Negative regulator of the PHO system OS=Debaryomyces hansenii GN=PHO85 PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.475e-16
Identity = 56/142 (39.44%), Postives = 83/142 (58.45%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVH------DYQSAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRG-ISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VYKGR  ++  +VALKE++         +A REI  ++ L +  N+V L++    E++   LV EF+  DL       KK  E  G++G + +  +K ++ Q+L G+  CH N ++HRDLKP NLLI + G LKL DFG AR
Sbjct:   22 VYKGRNRTNGQLVALKEINLDSEEGTPSTAIREISLMKELDHE-NIVTLYDVIHTENK-LTLVFEFMDKDL-------KKYMEAHGNQGALDLKIVKSFIFQLLKGIMFCHDNRVLHRDLKPQNLLINNKGELKLGDFGLAR 154          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK20_MACMU (Cell division protein kinase 20 OS=Macaca mulatta GN=CDK20 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.475e-16
Identity = 59/155 (38.06%), Postives = 84/155 (54.19%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVHDYQ-------SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILLGNEFDAPDGN 449
            V+K + +    IVALK+V   +        A REI+ALQ + ++  VV L   F       VL  EF+ +DLA V+  ++        R ++  ++K ++  +L GV  CH N IVHRDLKP NLLI   G LK+ADFG AR+       +PDG+
Sbjct:   18 VFKAKHVETGEIVALKKVALRRLEDGFPNQALREIKALQEMGDNQYVVQLKAVF-PHGGGFVLAFEFMLSDLAEVVRHAQ--------RPLAQAQVKSYLQMLLKGVAFCHANNIVHRDLKPANLLISASGQLKIADFGLARVF------SPDGS 157          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK17_RAT (Cell division protein kinase 17 OS=Rattus norvegicus GN=Cdk17 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.475e-16
Identity = 61/142 (42.96%), Postives = 89/142 (62.68%), Query Frame = 3
Query:    6 VYKGR-RLSDNLIVALKEVH-DYQ-----SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VYKGR +L++NL VALKE+  +++     +A RE+  L+ L+++ N+V LH+     D+   LV E+L  DL       K+  +D G   +S+  +K ++ QIL G+  CHR  ++HRDLKP NLLI + G LKLADFG AR
Sbjct:  206 VYKGRSKLTENL-VALKEIRLEHEEGAPCTAIREVSLLKDLKHA-NIVTLHDIV-HTDKSLTLVFEYLDKDL-------KQYMDDCGSI-MSMHNVKLFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLAR 336          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK16_MOUSE (Cell division protein kinase 16 OS=Mus musculus GN=Cdk16 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.286e-16
Identity = 60/142 (42.25%), Postives = 90/142 (63.38%), Query Frame = 3
Query:    6 VYKGR-RLSDNLIVALKEVH-DYQ-----SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VYKG+ +L+DNL VALKE+  +++     +A RE+  L+ L+++ N+V LH+    E +   LV E+L  DL       K+  +D G+  I++  +K ++ Q+L G+  CHR  ++HRDLKP NLLI + G LKLADFG AR
Sbjct:  179 VYKGKSKLTDNL-VALKEIRLEHEEGAPCTAIREVSLLKDLKHA-NIVTLHDIIHTE-KSLTLVFEYLDKDL-------KQYLDDCGNV-INMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLAR 309          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK16_HUMAN (Cell division protein kinase 16 OS=Homo sapiens GN=CDK16 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.286e-16
Identity = 60/142 (42.25%), Postives = 90/142 (63.38%), Query Frame = 3
Query:    6 VYKGR-RLSDNLIVALKEVH-DYQ-----SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VYKG+ +L+DNL VALKE+  +++     +A RE+  L+ L+++ N+V LH+    E +   LV E+L  DL       K+  +D G+  I++  +K ++ Q+L G+  CHR  ++HRDLKP NLLI + G LKLADFG AR
Sbjct:  179 VYKGKSKLTDNL-VALKEIRLEHEEGAPCTAIREVSLLKDLKHA-NIVTLHDIIHTE-KSLTLVFEYLDKDL-------KQYLDDCGNI-INMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLAR 309          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: PHO85_YARLI (Negative regulator of the PHO system OS=Yarrowia lipolytica GN=PHO85 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.291e-16
Identity = 56/142 (39.44%), Postives = 83/142 (58.45%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVH------DYQSAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRG-ISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VYKGR  +   +VALKE++         +A REI  ++ L++  N+V L++    E++   LV E++  DL       KK  +  G++G +   ++K +M Q+L G+  CH N ++HRDLKP NLLI   G LKLADFG AR
Sbjct:   21 VYKGRNRTTGQLVALKEINLDSEEGTPSTAIREISLMKELKHE-NIVTLYDVIHTENK-LNLVFEYMDKDL-------KKFMDTNGNKGALETKQVKWFMYQLLRGILFCHDNRVLHRDLKPQNLLINAKGQLKLADFGLAR 153          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: PHO85_ASHGO (Negative regulator of the PHO system OS=Ashbya gossypii GN=PHO85 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.291e-16
Identity = 59/141 (41.84%), Postives = 81/141 (57.45%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVH------DYQSAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VYKG   +  L VALKEV          +A REI  ++ L++  N+V L++    E++   LV EF+  DL   + +S+  RE    RG+ +  +K +  Q+L GV  CH N I+HRDLKP NLLI + G LKL DFG AR
Sbjct:   23 VYKGLNKTTGLYVALKEVKLDSEEGTPSTAIREISLMKELKHE-NIVRLYDVIHTENK-LTLVFEFMDNDLKKFM-DSRLDREM--PRGLELSLVKYFQWQLLQGVAFCHENRILHRDLKPQNLLINNKGQLKLGDFGLAR 158          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDKD2_ARATH (Cyclin-dependent kinase D-2 OS=Arabidopsis thaliana GN=CDKD-2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.291e-16
Identity = 58/145 (40.00%), Postives = 82/145 (56.55%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVHDYQ-------SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGI--SVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARI 413
            VYK         VA+K++           +A REI+ L+ L N P++V L + F   D    LV E+++TDL  VI           DR I  S G+IK +M+  L G+  CH+  ++HRD+KP NLLIG++G+LKLADFG AR+
Sbjct:   27 VYKATDTKTGKTVAVKKIRLGNQKEGVNFTALREIKLLKEL-NHPHIVELIDAF-PHDGSLHLVFEYMQTDLEAVIR----------DRNIFLSPGDIKSYMLMTLKGLAYCHKKWVLHRDMKPNNLLIGENGLLKLADFGLARL 159          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CKD18_RAT (Cell division protein kinase 18 OS=Rattus norvegicus GN=Cdk18 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.605e-16
Identity = 59/142 (41.55%), Postives = 87/142 (61.27%), Query Frame = 3
Query:    6 VYKGR-RLSDNLIVALKEVH-DYQ-----SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            V+KGR +L++NL VALKE+  +++     +A RE+  L+ L+++ N+V LH+     D    LV E+L +DL        K+  D     +++  +K +M Q+L G+  CHR  I+HRDLKP NLLI + G LKLADFG AR
Sbjct:  135 VFKGRSKLTENL-VALKEIRLEHEEGAPCTAIREVSLLKDLKHA-NIVTLHDLI-HTDRSLTLVFEYLDSDL--------KQYLDHCGNLMNMHNVKIFMFQLLRGLAYCHRRKILHRDLKPQNLLINERGELKLADFGLAR 265          
The following BLAST results are available for this feature:
BLAST of FC878501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CDK17_MOUSE1.129e-1642.96Cell division protein kinase 17 OS=Mus musculus GN... [more]
PHO85_DEBHA1.475e-1639.44Negative regulator of the PHO system OS=Debaryomyc... [more]
CDK20_MACMU1.475e-1638.06Cell division protein kinase 20 OS=Macaca mulatta ... [more]
CDK17_RAT1.475e-1642.96Cell division protein kinase 17 OS=Rattus norvegic... [more]
CDK16_MOUSE3.286e-1642.25Cell division protein kinase 16 OS=Mus musculus GN... [more]
CDK16_HUMAN3.286e-1642.25Cell division protein kinase 16 OS=Homo sapiens GN... [more]
PHO85_YARLI4.291e-1639.44Negative regulator of the PHO system OS=Yarrowia l... [more]
PHO85_ASHGO4.291e-1641.84Negative regulator of the PHO system OS=Ashbya gos... [more]
CDKD2_ARATH4.291e-1640.00Cyclin-dependent kinase D-2 OS=Arabidopsis thalian... [more]
CKD18_RAT5.605e-1641.55Cell division protein kinase 18 OS=Rattus norvegic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA22DH11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878501 ID=FC878501; Name=FC878501; organism=Citrus clementina; type=EST; length=872bp
CCGACGTGTACAAGGGCCGGCGATTATCGGACAACCTGATCGTCGCGCTG
AAGGAGGTCCACGACTACCAATCGGCGTTCCGAGAAATCGAGGCGCTGCA
GATCCTACAGAACTCACCGAACGTGGTGGTTTTGCACGAGTACTTTTGGC
GGGAGGACGAGGACGCCGTGCTGGTGCTGGAGTTTCTGAGGACCGATTTG
GCGACGGTGATTGCGGAGTCCAAGAAGAAGAGAGAGGACCGGGGCGATCG
TGGAATCAGCGTCGGTGAGATTAAGAGATGGATGGTCCAGATTTTGTCTG
GAGTGGACGCCTGTCACAGGAATACGATCGTTCATCGGGATTTGAAGCCT
GGGAATTTGTTGATCGGCGATGATGGGGTTCTAAAGTTGGCCGATTTTGG
CCAGGCAAGGATACTCCTGGGTAATGAATTCGATGCTCCTGATGGTAATT
CTCAGCCTTGTGAACCCAATGCTCCATATCAAGATAACATGTCTGAAGCT
CCACAAGTTGATCTTGAGGTAGAAGATGCATCCCCAGAAGGAGATGTTAA
TCAAGAGCAGGGTATAATGAGTAGAGAAGATTATTTTAGGGCATTAGACG
AACTAAAGGCTAAGAACTCCATAGATGAGACTGATAAGGATACGCATGTT
CATGATGGAGATACGTCATGTTTTGCAACATGCACAACCAGCGATGTAGA
AGATGATCTTTTCAAGGGTACCTATTCTTATGACGCAGAGGATGGTGGAG
ATGGTAGACAAGGTGCCCTCACTTCCTGTGTTGGAACTCGCTGGTTCAGG
GCCCCTGAACTACTTTATGGATCCACATCCTATGGACTTGAGGTTGATCT
GTGGTCATTGGGCTGCATATTT
back to top