FC878501

Overview
NameFC878501
Unique NameFC878501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length872
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: RKIN1_SECCE (Carbon catabolite-derepressing protein kinase OS=Secale cereale GN=RKIN1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.090e-11
Identity = 43/124 (34.68%), Postives = 70/124 (56.45%), Query Frame = 3
Query:   69 QSAFREIEALQILQN--SPNVVVLHEYFWREDEDAVLVLEFLRT-DLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILLGNEF 431
            + A REI+ L++  +   P+++ ++E      +D  +V+E+ +  DL   I E ++ +ED         E +R   QI+S V+ CHRN +VHRDLKP NLL+     +KLADFG + ++    F
Sbjct:   57 EKAKREIKILRLFIDLIHPHIIRVYEVIVTP-KDIFVVMEYCQNGDLLDYILEKRRLQED---------EARRTFQQIISAVEYCHRNKVVHRDLKPENLLLDSKYNVKLADFGLSNVMHDGHF 170          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDKC2_ORYSJ (Cyclin-dependent kinase C-2 OS=Oryza sativa subsp. japonica GN=CDKC-2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.090e-11
Identity = 55/158 (34.81%), Postives = 79/158 (50.00%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVH-DYQ------SAFREIEALQILQNSPNVVVLHEYFW----REDEDA------------VLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VY  +    N IVALK++  D +      +A REI+ L+ L +  NV+ L E         DE               +V E++  DL  +         DR     +V +IK +M Q+L+G+  CH N ++HRD+K  NLLI ++G LKLADFG AR
Sbjct:   39 VYMAKETETNEIVALKKIRMDNEREGFPITAIREIKILKKLHHQ-NVIQLKEIVTSPGPERDEQGKPIEGNKYKGSIYMVFEYMDHDLTGLA--------DRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLAR 187          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDKC1_ARATH (Cyclin-dependent kinase C-1 OS=Arabidopsis thaliana GN=CDKC-1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.090e-11
Identity = 53/157 (33.76%), Postives = 78/157 (49.68%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVH-DYQ------SAFREIEALQILQNSPNVVVLHEYFWREDEDA---------------VLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VY  + +    IVALK++  D +      +A REI+ L+ L +  NV+ L E       D                 +V E++  DL  +         DR     +V +IK +M Q+L+G+  CH N ++HRD+K  NLLI ++G LKLADFG AR
Sbjct:   40 VYMAKEIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHE-NVIQLKEIVTSPGRDRDDQGKPDNNKYKGGIYMVFEYMDHDLTGLA--------DRPGLRFTVPQIKCYMKQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLAR 187          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK6_MOUSE (Cell division protein kinase 6 OS=Mus musculus GN=Cdk6 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.090e-11
Identity = 55/150 (36.67%), Postives = 74/150 (49.33%), Query Frame = 3
Query:    6 VYKGRRLSDN-LIVALKEVHDYQS-------AFREIEALQILQN--SPNVVVLHEYFW--REDEDA--VLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARI 413
            V+K R L +    VALK V    S         RE+  L+ L+    PNVV L +     R D +    LV E +  DL T + +  +        G+    IK  M Q+L G+D  H + +VHRDLKP N+L+   G +KLADFG ARI
Sbjct:   27 VFKARDLKNGGRFVALKRVRVQTSEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEP-------GVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARI 169          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK6_HUMAN (Cell division protein kinase 6 OS=Homo sapiens GN=CDK6 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.090e-11
Identity = 55/150 (36.67%), Postives = 74/150 (49.33%), Query Frame = 3
Query:    6 VYKGRRLSDN-LIVALKEVHDYQ-------SAFREIEALQILQN--SPNVVVLHEYFW--REDEDA--VLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARI 413
            V+K R L +    VALK V           S  RE+  L+ L+    PNVV L +     R D +    LV E +  DL T + +  +        G+    IK  M Q+L G+D  H + +VHRDLKP N+L+   G +KLADFG ARI
Sbjct:   27 VFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEP-------GVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARI 169          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: Y2550_DICDI (Probable cyclin-dependent serine/threonine-protein kinase DDB_G0292550 OS=Dictyostelium discoideum GN=DDB_G0292550 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11
Identity = 55/173 (31.79%), Postives = 83/173 (47.98%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALK--EVHDYQSAFR-EIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILLGNEFDAPDGNSQPCEPNAPYQDNMSEAPQVDL 515
            VYK         VALK   V + ++    E++ L  L++  N+V L EYF+  D+  V+V E+L  DL   I+   K         +++   K ++ Q+L G+D  H   I+H D+KP NLLI     LK+ADFG     +GN   A    S    P      + +  P+VD+
Sbjct:   18 VYKAIHNLSKCTVALKIISVMNIENGLPVEVKYLMKLRDCKNIVHLIEYFYSNDDKLVMVFEYLEYDLWKFISPKNKY--------MTLSCTKFFIHQLLEGLDELHSQKIMHLDIKPSNLLINPRFDLKIADFG-FTTYIGNPHLAHQVISLFYRPPELLMGSRNYGPEVDI 181          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: GSK3_CAEBR (Glycogen synthase kinase-3 OS=Caenorhabditis briggsae GN=gsk-3 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11
Identity = 51/148 (34.46%), Postives = 84/148 (56.76%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEV-HDYQSAFREIEALQILQNSPNVVVLHEYFW----REDEDAV-LVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIG-DDGVLKLADFGQARILLGNE 428
            V+  +  + N +VA+K+V  D +   RE++ ++ L N PN+V L  +F+    ++DE  + L+LE++   +  V     K+R+      I +  +K +M Q+L  +   H   I HRD+KP NLLI  + G+LKL DFG A+ L+ NE
Sbjct:   50 VFLAKLSTTNEMVAIKKVLQDKRFKNRELQIMRKL-NHPNIVKLKYFFYSSGDKKDELYLNLILEYVPETVYRVARHYSKQRQS-----IPMIYVKLYMYQLLRSLAYIHSIGICHRDIKPQNLLIDPETGILKLCDFGSAKYLVRNE 191          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDKC2_ARATH (Cyclin-dependent kinase C-2 OS=Arabidopsis thaliana GN=CDKC-2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11
Identity = 53/157 (33.76%), Postives = 78/157 (49.68%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVH-DYQ------SAFREIEALQILQNSPNVVVLHEYFWREDEDA---------------VLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VY  + +    IVALK++  D +      +A REI+ L+ L +  NV+ L E       D                 +V E++  DL  +         DR     +V +IK +M Q+L+G+  CH N ++HRD+K  NLLI ++G LKLADFG AR
Sbjct:   40 VYMAKEIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHE-NVIHLKEIVTSPGRDRDDQGKPDNNKYKGGIYMVFEYMDHDLTGLA--------DRPGLRFTVPQIKCYMKQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLAR 187          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK4_HUMAN (Cell division protein kinase 4 OS=Homo sapiens GN=CDK4 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11
Identity = 56/152 (36.84%), Postives = 69/152 (45.39%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVHDYQ----------SAFREIEALQILQ--NSPNVVVLHEYFWREDED----AVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARI 413
            VYK R       VALK V              S  RE+  L+ L+    PNVV L +       D      LV E +  DL T + ++          G+    IK  M Q L G+D  H N IVHRDLKP N+L+   G +KLADFG ARI
Sbjct:   20 VYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPP-------GLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARI 164          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: AIR2_CAEEL (Aurora/Ipl1-related protein kinase 2 OS=Caenorhabditis elegans GN=air-2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.260e-11
Identity = 47/141 (33.33%), Postives = 70/141 (49.65%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVHDYQ--------SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRT-DLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFG 401
            VY  R  + +  VA+K +   Q           REIE +Q   N PN++ L+ YFW + +   LVLE+    ++   +  SK+  E             ++M +I   +  CHR  ++HRD+KP NLLIG  G LK+ DFG
Sbjct:   44 VYLARTKTGHFHVAIKVLFKSQLISGGVEHQLEREIE-IQSHLNHPNIIKLYTYFW-DAKKIYLVLEYAPGGEMYKQLTVSKRFSEPTA---------AKYMYEIADALSYCHRKNVIHRDIKPENLLIGSQGELKIGDFG 173          
The following BLAST results are available for this feature:
BLAST of FC878501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
RKIN1_SECCE7.090e-1134.68Carbon catabolite-derepressing protein kinase OS=S... [more]
CDKC2_ORYSJ7.090e-1134.81Cyclin-dependent kinase C-2 OS=Oryza sativa subsp.... [more]
CDKC1_ARATH7.090e-1133.76Cyclin-dependent kinase C-1 OS=Arabidopsis thalian... [more]
CDK6_MOUSE7.090e-1136.67Cell division protein kinase 6 OS=Mus musculus GN=... [more]
CDK6_HUMAN7.090e-1136.67Cell division protein kinase 6 OS=Homo sapiens GN=... [more]
Y2550_DICDI9.260e-1131.79Probable cyclin-dependent serine/threonine-protein... [more]
GSK3_CAEBR9.260e-1134.46Glycogen synthase kinase-3 OS=Caenorhabditis brigg... [more]
CDKC2_ARATH9.260e-1133.76Cyclin-dependent kinase C-2 OS=Arabidopsis thalian... [more]
CDK4_HUMAN9.260e-1136.84Cell division protein kinase 4 OS=Homo sapiens GN=... [more]
AIR2_CAEEL9.260e-1133.33Aurora/Ipl1-related protein kinase 2 OS=Caenorhabd... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22DH11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878501 ID=FC878501; Name=FC878501; organism=Citrus clementina; type=EST; length=872bp
CCGACGTGTACAAGGGCCGGCGATTATCGGACAACCTGATCGTCGCGCTG
AAGGAGGTCCACGACTACCAATCGGCGTTCCGAGAAATCGAGGCGCTGCA
GATCCTACAGAACTCACCGAACGTGGTGGTTTTGCACGAGTACTTTTGGC
GGGAGGACGAGGACGCCGTGCTGGTGCTGGAGTTTCTGAGGACCGATTTG
GCGACGGTGATTGCGGAGTCCAAGAAGAAGAGAGAGGACCGGGGCGATCG
TGGAATCAGCGTCGGTGAGATTAAGAGATGGATGGTCCAGATTTTGTCTG
GAGTGGACGCCTGTCACAGGAATACGATCGTTCATCGGGATTTGAAGCCT
GGGAATTTGTTGATCGGCGATGATGGGGTTCTAAAGTTGGCCGATTTTGG
CCAGGCAAGGATACTCCTGGGTAATGAATTCGATGCTCCTGATGGTAATT
CTCAGCCTTGTGAACCCAATGCTCCATATCAAGATAACATGTCTGAAGCT
CCACAAGTTGATCTTGAGGTAGAAGATGCATCCCCAGAAGGAGATGTTAA
TCAAGAGCAGGGTATAATGAGTAGAGAAGATTATTTTAGGGCATTAGACG
AACTAAAGGCTAAGAACTCCATAGATGAGACTGATAAGGATACGCATGTT
CATGATGGAGATACGTCATGTTTTGCAACATGCACAACCAGCGATGTAGA
AGATGATCTTTTCAAGGGTACCTATTCTTATGACGCAGAGGATGGTGGAG
ATGGTAGACAAGGTGCCCTCACTTCCTGTGTTGGAACTCGCTGGTTCAGG
GCCCCTGAACTACTTTATGGATCCACATCCTATGGACTTGAGGTTGATCT
GTGGTCATTGGGCTGCATATTT
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