FC878501

Overview
NameFC878501
Unique NameFC878501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length872
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK2_CARAU (Cell division protein kinase 2 OS=Carassius auratus GN=cdk2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.130e-15
Identity = 57/142 (40.14%), Postives = 79/142 (55.63%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVH-DYQS------AFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VYK +       VALK++  D ++      A REI  L+ L N PN+V LH+    E++   LV EFL  DL       K+  +     GIS+  +K ++ Q+L G+  CH + ++HRDLKP NLLI   G +KLADFG AR
Sbjct:   18 VYKAKNKVTGETVALKKIRLDTETEGVPSTAIREISLLKEL-NHPNIVKLHDVIHTENK-LYLVFEFLHQDL-------KRFMDSSTVTGISLPLVKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINAQGEIKLADFGLAR 150          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK18_MOUSE (Cell division protein kinase 18 OS=Mus musculus GN=Cdk18 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.130e-15
Identity = 58/142 (40.85%), Postives = 86/142 (60.56%), Query Frame = 3
Query:    6 VYKGR-RLSDNLIVALKEVH-DYQ-----SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            V+KGR +L++NL VALKE+  +++     +A RE+  L+ L+++ N+V LH+     D    LV E+L +DL        K+  D     +++  +K +M Q+L G+  CH   I+HRDLKP NLLI + G LKLADFG AR
Sbjct:  135 VFKGRSKLTENL-VALKEIRLEHEEGAPCTAIREVSLLKDLKHA-NIVTLHDLI-HTDRSLTLVFEYLDSDL--------KQYLDHCGNLMNMHNVKIFMFQLLRGLAYCHHRKILHRDLKPQNLLINERGELKLADFGLAR 265          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK7_RAT (Cell division protein kinase 7 (Fragment) OS=Rattus norvegicus GN=Cdk7 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.782e-15
Identity = 53/145 (36.55%), Postives = 84/145 (57.93%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVH----------DYQSAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VYK R  + N IVA+K++             ++A REI+ LQ L + PN++ L + F  +   + LV +F+ TDL  +I ++           ++   IK +M+  L G++  H++ I+HRDLKP NLL+ ++GVLKLADFG A+
Sbjct:   18 VYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSH-PNIIGLLDAFGHKSNIS-LVFDFMETDLEVIIKDNSLV--------LTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAK 152          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK7_MOUSE (Cell division protein kinase 7 OS=Mus musculus GN=Cdk7 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.782e-15
Identity = 53/145 (36.55%), Postives = 84/145 (57.93%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVH----------DYQSAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VYK R  + N IVA+K++             ++A REI+ LQ L + PN++ L + F  +   + LV +F+ TDL  +I ++           ++   IK +M+  L G++  H++ I+HRDLKP NLL+ ++GVLKLADFG A+
Sbjct:   26 VYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSH-PNIIGLLDAFGHKSNIS-LVFDFMETDLEVIIKDNSLV--------LTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAK 160          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK7_HUMAN (Cell division protein kinase 7 OS=Homo sapiens GN=CDK7 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.782e-15
Identity = 53/145 (36.55%), Postives = 84/145 (57.93%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVH----------DYQSAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VYK R  + N IVA+K++             ++A REI+ LQ L + PN++ L + F  +   + LV +F+ TDL  +I ++           ++   IK +M+  L G++  H++ I+HRDLKP NLL+ ++GVLKLADFG A+
Sbjct:   26 VYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSH-PNIIGLLDAFGHKSNIS-LVFDFMETDLEVIIKDNSLV--------LTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAK 160          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK2_HUMAN (Cell division protein kinase 2 OS=Homo sapiens GN=CDK2 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.782e-15
Identity = 58/142 (40.85%), Postives = 79/142 (55.63%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVH-DYQS------AFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VYK R      +VALK++  D ++      A REI  L+ L N PN+V L +    E++   LV EFL  DL       KK  +     GI +  IK ++ Q+L G+  CH + ++HRDLKP NLLI  +G +KLADFG AR
Sbjct:   18 VYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL-NHPNIVKLLDVIHTENK-LYLVFEFLHQDL-------KKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 150          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDC2B_XENLA (Cell division control protein 2-B OS=Xenopus laevis GN=cdc2-B PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.782e-15
Identity = 58/144 (40.28%), Postives = 78/144 (54.17%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVHDYQ-------SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRG--ISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VYKGR  +   +VA+K++           +A REI  L+ LQ+ PN+V L +    +D    L+ EFL  DL        KK  D    G  I    +K ++ QIL G+  CH   ++HRDLKP NLLI + GV+KLADFG AR
Sbjct:   18 VYKGRHKATGQVVAMKKIRLENEEEGVPSTAIREISLLKELQH-PNIVCLLDVLM-QDSRLYLIFEFLSMDL--------KKYLDSIPSGQYIDTMLVKSYLYQILQGIVFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLAR 151          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: PEF1_SCHPO (Serine/threonine-protein kinase pef1 OS=Schizosaccharomyces pombe GN=pef1 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.633e-15
Identity = 54/142 (38.03%), Postives = 80/142 (56.34%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVH------DYQSAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRG-ISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VYKG+      IVALK +          +A REI  ++ L++ PN++ L +    E++  +LV E++  DL       KK  +  G++G +   ++K +  Q+L G+  CH N ++HRDLKP NLLI   G LKLADFG AR
Sbjct:   17 VYKGQNRVTGEIVALKVIRIDADEGTPSTAIREISLMKELRH-PNIMSLSDVLQTENK-LMLVFEYMEKDL-------KKYMDTYGNQGALPPSQVKNFTQQLLKGISFCHENRVLHRDLKPQNLLINSRGELKLADFGLAR 149          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: KIN28_ENCCU (Probable serine/threonine-protein kinase KIN28 homolog OS=Encephalitozoon cuniculi GN=KIN28 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.633e-15
Identity = 52/142 (36.62%), Postives = 83/142 (58.45%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVHDYQ-------SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            V  G R+ D + VA+K++   +       SA REI++L+ + +   V ++  + +  D+   +VLE++ T+L  VI  S        D+ I  G+IK W++ +L GV  CHR  I+HRD+KP N+LI  +G++KLADFG  R
Sbjct:   32 VSSGTRIED-VPVAIKKIKPTKYTQGHEISAIREIKSLKRIDSKYVVRLIDTFVY--DKCVHIVLEYVETNLENVIRNS--------DKIIMPGDIKAWILMVLRGVYECHRLFIIHRDIKPNNILITSEGMVKLADFGLTR 162          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK5_DICDI (Cell division protein kinase 5 homolog OS=Dictyostelium discoideum GN=cdk5 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.633e-15
Identity = 61/142 (42.96%), Postives = 77/142 (54.23%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVH-DYQ------SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VYK +      IVALK +  D +      +A REI  L+ L++ PN+V LH+    E +   LV E+L  DL        KK  D     IS   IK +M Q+L GV  CH + ++HRDLKP NLLI   G LKLADFG AR
Sbjct:   18 VYKAKNRETGEIVALKRIRLDSEDEGVPCTAIREISLLKELKH-PNIVRLHDVIHTERK-LTLVFEYLDQDL--------KKYLDECGGEISKPTIKSFMYQLLKGVAFCHDHRVLHRDLKPQNLLINRKGELKLADFGLAR 149          
The following BLAST results are available for this feature:
BLAST of FC878501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CDK2_CARAU2.130e-1540.14Cell division protein kinase 2 OS=Carassius auratu... [more]
CDK18_MOUSE2.130e-1540.85Cell division protein kinase 18 OS=Mus musculus GN... [more]
CDK7_RAT2.782e-1536.55Cell division protein kinase 7 (Fragment) OS=Rattu... [more]
CDK7_MOUSE2.782e-1536.55Cell division protein kinase 7 OS=Mus musculus GN=... [more]
CDK7_HUMAN2.782e-1536.55Cell division protein kinase 7 OS=Homo sapiens GN=... [more]
CDK2_HUMAN2.782e-1540.85Cell division protein kinase 2 OS=Homo sapiens GN=... [more]
CDC2B_XENLA2.782e-1540.28Cell division control protein 2-B OS=Xenopus laevi... [more]
PEF1_SCHPO3.633e-1538.03Serine/threonine-protein kinase pef1 OS=Schizosacc... [more]
KIN28_ENCCU3.633e-1536.62Probable serine/threonine-protein kinase KIN28 hom... [more]
CDK5_DICDI3.633e-1542.96Cell division protein kinase 5 homolog OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22DH11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878501 ID=FC878501; Name=FC878501; organism=Citrus clementina; type=EST; length=872bp
CCGACGTGTACAAGGGCCGGCGATTATCGGACAACCTGATCGTCGCGCTG
AAGGAGGTCCACGACTACCAATCGGCGTTCCGAGAAATCGAGGCGCTGCA
GATCCTACAGAACTCACCGAACGTGGTGGTTTTGCACGAGTACTTTTGGC
GGGAGGACGAGGACGCCGTGCTGGTGCTGGAGTTTCTGAGGACCGATTTG
GCGACGGTGATTGCGGAGTCCAAGAAGAAGAGAGAGGACCGGGGCGATCG
TGGAATCAGCGTCGGTGAGATTAAGAGATGGATGGTCCAGATTTTGTCTG
GAGTGGACGCCTGTCACAGGAATACGATCGTTCATCGGGATTTGAAGCCT
GGGAATTTGTTGATCGGCGATGATGGGGTTCTAAAGTTGGCCGATTTTGG
CCAGGCAAGGATACTCCTGGGTAATGAATTCGATGCTCCTGATGGTAATT
CTCAGCCTTGTGAACCCAATGCTCCATATCAAGATAACATGTCTGAAGCT
CCACAAGTTGATCTTGAGGTAGAAGATGCATCCCCAGAAGGAGATGTTAA
TCAAGAGCAGGGTATAATGAGTAGAGAAGATTATTTTAGGGCATTAGACG
AACTAAAGGCTAAGAACTCCATAGATGAGACTGATAAGGATACGCATGTT
CATGATGGAGATACGTCATGTTTTGCAACATGCACAACCAGCGATGTAGA
AGATGATCTTTTCAAGGGTACCTATTCTTATGACGCAGAGGATGGTGGAG
ATGGTAGACAAGGTGCCCTCACTTCCTGTGTTGGAACTCGCTGGTTCAGG
GCCCCTGAACTACTTTATGGATCCACATCCTATGGACTTGAGGTTGATCT
GTGGTCATTGGGCTGCATATTT
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