FC878501

Overview
NameFC878501
Unique NameFC878501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length872
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: SNF1_CANTR (Carbon catabolite-derepressing protein kinase OS=Candida tropicalis GN=SNF1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.603e-13
Identity = 50/146 (34.25%), Postives = 80/146 (54.79%), Query Frame = 3
Query:   81 REIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILL-GNEFDAPDGNSQPCEPNAPYQDNMSEAPQVDL 515
            REI  L++L++ P+++ L++    +DE  ++V+EF   +L   I +  K  ED         E +R+  QI++ V+ CHR+ IVHRDLKP NLL+ D   +K+ADFG + I+  GN      G+     P       +   P+VD+
Sbjct:   99 REISYLRLLRH-PHIIKLYDVIKSKDE-IIMVIEFAGKELFDYIVQRGKMPED---------EARRFFQQIIAAVEYCHRHKIVHRDLKPENLLLDDQLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEV-ISGKLYAGPEVDV 232          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK5_MOUSE (Cell division protein kinase 5 OS=Mus musculus GN=Cdk5 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.400e-13
Identity = 55/142 (38.73%), Postives = 74/142 (52.11%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVH-------DYQSAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            V+K +    + IVALK V           SA REI  L+ L++  N+V LH+     D+   LV EF   DL        KK  D  +  +    +K ++ Q+L G+  CH   ++HRDLKP NLLI  +G LKLADFG AR
Sbjct:   18 VFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK-NIVRLHDVL-HSDKKLTLVFEFCDQDL--------KKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLADFGLAR 149          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK5_HUMAN (Cell division protein kinase 5 OS=Homo sapiens GN=CDK5 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 3.400e-13
Identity = 55/142 (38.73%), Postives = 74/142 (52.11%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVH-------DYQSAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            V+K +    + IVALK V           SA REI  L+ L++  N+V LH+     D+   LV EF   DL        KK  D  +  +    +K ++ Q+L G+  CH   ++HRDLKP NLLI  +G LKLADFG AR
Sbjct:   18 VFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK-NIVRLHDVL-HSDKKLTLVFEFCDQDL--------KKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLADFGLAR 149          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK5_BOVIN (Cell division protein kinase 5 OS=Bos taurus GN=CDK5 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.400e-13
Identity = 55/142 (38.73%), Postives = 74/142 (52.11%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVH-------DYQSAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            V+K +    + IVALK V           SA REI  L+ L++  N+V LH+     D+   LV EF   DL        KK  D  +  +    +K ++ Q+L G+  CH   ++HRDLKP NLLI  +G LKLADFG AR
Sbjct:   18 VFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK-NIVRLHDVL-HSDKKLTLVFEFCDQDL--------KKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLADFGLAR 149          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: PPK23_SCHPO (Serine/threonine-protein kinase ppk23 OS=Schizosaccharomyces pombe GN=ppk23 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.441e-13
Identity = 51/143 (35.66%), Postives = 78/143 (54.55%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVHDYQS-------AFREIEALQILQNSPNVVVLHEYFWRED-EDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VY+G   S N +VALK++    +       + REIE+L  +++  N+V L +    +D +D  LV+EF+  DL T++        D         E+K  M+Q+L+     H +  +HRDLKP NLL+ + G +KLADFG AR
Sbjct:   88 VYRGLDKSTNTLVALKKIKFDPNGIGFPITSLREIESLSSIRHD-NIVELEKVVVGKDLKDVYLVMEFMEHDLKTLL--------DNMPEDFLQSEVKTLMLQLLAATAFMHHHWYLHRDLKPSNLLMNNTGEIKLADFGLAR 221          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDC28_YEAST (Cell division control protein 28 OS=Saccharomyces cerevisiae GN=CDC28 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.800e-13
Identity = 45/113 (39.82%), Postives = 64/113 (56.64%), Query Frame = 3
Query:   72 SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            +A REI  L+ L++  N+V L++    +     LV EFL  DL   +    K      D+ +    +K++M+Q+  G+  CH + I+HRDLKP NLLI  DG LKL DFG AR
Sbjct:   54 TAIREISLLKELKDD-NIVRLYDIVHSDAHKLYLVFEFLDLDLKRYMEGIPK------DQPLGADIVKKFMMQLCKGIAYCHSHRILHRDLKPQNLLINKDGNLKLGDFGLAR 159          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDK5_RAT (Cell division protein kinase 5 OS=Rattus norvegicus GN=Cdk5 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.575e-13
Identity = 55/142 (38.73%), Postives = 73/142 (51.41%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVH-------DYQSAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            V+K +    + IVALK V           SA REI  L+ L++  N+V LH+     D+   LV EF   DL        KK  D  +  +    +K  + Q+L G+  CH   ++HRDLKP NLLI  +G LKLADFG AR
Sbjct:   18 VFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK-NIVRLHDVL-HSDKKLTLVFEFCDQDL--------KKYFDSCNGDLDPEIVKSLLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLADFGLAR 149          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: BUR1_CANAL (Serine/threonine-protein kinase BUR1 OS=Candida albicans GN=CRK1 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 7.575e-13
Identity = 51/159 (32.08%), Postives = 80/159 (50.31%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVHDYQS-------AFREIEALQILQNSPNVVVLHEYFWREDEDA------------VLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILLGN 425
            V K +   D  +VA+K++ ++ +       A REI  L+ L N  N++ + +  + E + +              V  ++ +DL  ++   K K E        +G+IK  M Q+L G+   H    +HRD+K  N+LIG DGVLK+ADFG ARI  GN
Sbjct:   58 VQKAKSKKDGSLVAIKQLINHSAKEGFPITAMREITILKQL-NHKNILTIQDMIFEEPKMSNRTDIITMRGSFYTVTPYMSSDLVGLLENPKIKLE--------LGQIKCIMQQLLKGIQYVHNQKFLHRDIKAANILIGQDGVLKIADFGLARIYHGN 207          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAVI (Cell division control protein 2 homolog OS=Plasmodium vivax GN=CRK2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.893e-13
Identity = 47/113 (41.59%), Postives = 67/113 (59.29%), Query Frame = 3
Query:   72 SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            +A REI  L+ L++S N+V L++    +    +LV E L  DL        KK  D  D G+     K +++Q+LSG+  CH + ++HRDLKP NLLI  +G LK+ADFG AR
Sbjct:   46 TAIREISILKELKHS-NIVKLYDVIHTKKR-LILVFEHLDQDL--------KKLLDVCDGGLESVTAKSFLLQLLSGIAYCHEHRVLHRDLKPQNLLINREGELKIADFGLAR 148          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAKH (Cell division control protein 2 homolog OS=Plasmodium knowlesi (strain H) GN=CRK2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.893e-13
Identity = 47/113 (41.59%), Postives = 67/113 (59.29%), Query Frame = 3
Query:   72 SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            +A REI  L+ L++S N+V L++    +    +LV E L  DL        KK  D  D G+     K +++Q+LSG+  CH + ++HRDLKP NLLI  +G LK+ADFG AR
Sbjct:   46 TAIREISILKELKHS-NIVKLYDVIHTKKR-LILVFEHLDQDL--------KKLLDVCDGGLESVTAKSFLLQLLSGIAYCHEHRVLHRDLKPQNLLINREGELKIADFGLAR 148          
The following BLAST results are available for this feature:
BLAST of FC878501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
SNF1_CANTR2.603e-1334.25Carbon catabolite-derepressing protein kinase OS=C... [more]
CDK5_MOUSE3.400e-1338.73Cell division protein kinase 5 OS=Mus musculus GN=... [more]
CDK5_HUMAN3.400e-1338.73Cell division protein kinase 5 OS=Homo sapiens GN=... [more]
CDK5_BOVIN3.400e-1338.73Cell division protein kinase 5 OS=Bos taurus GN=CD... [more]
PPK23_SCHPO4.441e-1335.66Serine/threonine-protein kinase ppk23 OS=Schizosac... [more]
CDC28_YEAST5.800e-1339.82Cell division control protein 28 OS=Saccharomyces ... [more]
CDK5_RAT7.575e-1338.73Cell division protein kinase 5 OS=Rattus norvegicu... [more]
BUR1_CANAL7.575e-1332.08Serine/threonine-protein kinase BUR1 OS=Candida al... [more]
CDC2H_PLAVI9.893e-1341.59Cell division control protein 2 homolog OS=Plasmod... [more]
CDC2H_PLAKH9.893e-1341.59Cell division control protein 2 homolog OS=Plasmod... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22DH11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878501 ID=FC878501; Name=FC878501; organism=Citrus clementina; type=EST; length=872bp
CCGACGTGTACAAGGGCCGGCGATTATCGGACAACCTGATCGTCGCGCTG
AAGGAGGTCCACGACTACCAATCGGCGTTCCGAGAAATCGAGGCGCTGCA
GATCCTACAGAACTCACCGAACGTGGTGGTTTTGCACGAGTACTTTTGGC
GGGAGGACGAGGACGCCGTGCTGGTGCTGGAGTTTCTGAGGACCGATTTG
GCGACGGTGATTGCGGAGTCCAAGAAGAAGAGAGAGGACCGGGGCGATCG
TGGAATCAGCGTCGGTGAGATTAAGAGATGGATGGTCCAGATTTTGTCTG
GAGTGGACGCCTGTCACAGGAATACGATCGTTCATCGGGATTTGAAGCCT
GGGAATTTGTTGATCGGCGATGATGGGGTTCTAAAGTTGGCCGATTTTGG
CCAGGCAAGGATACTCCTGGGTAATGAATTCGATGCTCCTGATGGTAATT
CTCAGCCTTGTGAACCCAATGCTCCATATCAAGATAACATGTCTGAAGCT
CCACAAGTTGATCTTGAGGTAGAAGATGCATCCCCAGAAGGAGATGTTAA
TCAAGAGCAGGGTATAATGAGTAGAGAAGATTATTTTAGGGCATTAGACG
AACTAAAGGCTAAGAACTCCATAGATGAGACTGATAAGGATACGCATGTT
CATGATGGAGATACGTCATGTTTTGCAACATGCACAACCAGCGATGTAGA
AGATGATCTTTTCAAGGGTACCTATTCTTATGACGCAGAGGATGGTGGAG
ATGGTAGACAAGGTGCCCTCACTTCCTGTGTTGGAACTCGCTGGTTCAGG
GCCCCTGAACTACTTTATGGATCCACATCCTATGGACTTGAGGTTGATCT
GTGGTCATTGGGCTGCATATTT
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