FC878501

Overview
NameFC878501
Unique NameFC878501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length872
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDC2H_PLACH (Cell division control protein 2 homolog OS=Plasmodium chabaudi GN=CRK2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.893e-13
Identity = 54/142 (38.03%), Postives = 79/142 (55.63%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVHDYQ-------SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VYK +  SD    ALK++   +       +A REI  L+ L++S N+V L++    +    +LV E L  DL        KK  D  D G+     K +++Q+L+G+  CH + ++HRDLKP NLLI  +G LK+ADFG AR
Sbjct:   18 VYKAQN-SDGESFALKKIRLEKEDEGIPSTAIREISILKELRHS-NIVKLYDVIHAKKR-LILVFEHLDQDL--------KKLIDVCDGGLESVTAKSFLLQLLNGIAYCHEHRVLHRDLKPQNLLINREGELKIADFGLAR 148          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDC2H_PLABA (Cell division control protein 2 homolog OS=Plasmodium berghei (strain Anka) GN=CRK2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.893e-13
Identity = 54/142 (38.03%), Postives = 79/142 (55.63%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVHDYQ-------SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VYK +  SD    ALK++   +       +A REI  L+ L++S N+V L++    +    +LV E L  DL        KK  D  D G+     K +++Q+L+G+  CH + ++HRDLKP NLLI  +G LK+ADFG AR
Sbjct:   18 VYKAQN-SDGESFALKKIRLEKEDEGIPSTAIREISILKELRHS-NIVKLYDVIHAKKR-LILVFEHLDQDL--------KKLIDVCDGGLESVTAKSFLLQLLNGIAYCHEHRVLHRDLKPQNLLINREGELKIADFGLAR 148          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDKL4_MOUSE (Cyclin-dependent kinase-like 4 OS=Mus musculus GN=Cdkl4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.292e-12
Identity = 51/145 (35.17%), Postives = 77/145 (53.10%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVHDYQS-------AFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILL 419
            V+K R  S   +VA+K+  + +        A REI  L+ L++ PN+V L E F R      LV E+    L   +        +R   G+S G IK  + Q L  ++ CH++  +HRD+KP N+LI   G++K+ DFG ARIL+
Sbjct:   18 VFKCRNKSSGQVVAIKKFVESEDDRVVRKIALREIRMLKQLKH-PNLVNLIEVF-RRKRKMHLVFEYCDHTLLNEL--------ERNPNGVSDGVIKSVLWQTLQALNFCHKHNCIHRDVKPENILITKQGMIKICDFGFARILI 152          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDKF3_ORYSJ (Cyclin-dependent kinase F-3 OS=Oryza sativa subsp. japonica GN=CDKF-3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.292e-12
Identity = 65/192 (33.85%), Postives = 95/192 (49.48%), Query Frame = 3
Query:    3 DVYKGRRLSDNLIVALKEVH------DYQSAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILLGNEFDAPDGNSQPCEPNAPYQDNMS----EAPQVDLEVEDASPEGDV 548
            +V++      N IVA+K++       +   + RE++ALQ L N PN+V L E    E+ +   + E +  +L  VI E +           S  EI+ +MVQIL G+   H N   HRDLKP NLL+  DG +K+ADFG AR          + +S P     PY D +S     AP+V L+    +P  D+
Sbjct:   17 NVFRAYNTETNEIVAVKKMKRKFFQWEECISLREVKALQKL-NHPNIVKLKEVTM-ENHELFFIFENMECNLYDVIRERQA--------AFSEEEIRNFMVQILQGLAYMHNNGYFHRDLKPENLLV-TDGTVKIADFGLAR----------EVSSSP-----PYTDYVSTRWYRAPEVLLQSSAYTPAIDM 182          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDC2C_DROME (Cell division control protein 2 cognate OS=Drosophila melanogaster GN=cdc2c PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.292e-12
Identity = 56/142 (39.44%), Postives = 73/142 (51.41%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVHDY-------QSAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            VYK R  S    VALK++           +A REI  L+ L++ PNVV L +       +  ++ E+L  DL        KK  D+     +   IK +M QIL  V  CH N I+HRDLKP NLL+   G +KLADFG AR
Sbjct:   22 VYKARSNSTGQDVALKKIRLEGETEGVPSTAIREISLLKNLKH-PNVVQLFDVVI-SGNNLYMIFEYLNMDL--------KKLMDKKKDVFTPQLIKSYMHQILDAVGFCHTNRILHRDLKPQNLLVDTAGKIKLADFGLAR 153          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CC2H1_TRYCO (Cell division control protein 2 homolog 1 OS=Trypanosoma congolense GN=CRK1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.292e-12
Identity = 55/152 (36.18%), Postives = 77/152 (50.66%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVHDYQ-------SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILLGNEFDAP 440
            VY+ R ++ ++IVALK +           +A REI  L+ L++  N+V L +    E+    LV E++  DL        KK  DR    +    I+ +M  +L GV  CH   ++HRDLKP NLLI  +  LKLADFG     LG  F  P
Sbjct:   19 VYRARDITTDVIVALKRIRLESVEEGVPCTAIREISILKELRHE-NIVRLLDVCHSENR-LNLVFEYMEMDL--------KKYMDRASGNLDPATIQEFMRSLLKGVRFCHERNVLHRDLKPPNLLISREKELKLADFG-----LGRAFGIP 155          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: BUR1_EMENI (Serine/threonine-protein kinase bur1 OS=Emericella nidulans GN=ptkA PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.292e-12
Identity = 50/150 (33.33%), Postives = 82/150 (54.67%), Query Frame = 3
Query:    3 DVYKGRRLSDNLIVALKEV--HDYQSAF-----REIEALQILQNSPNVVVLHEYF-------WREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQAR 410
            +VYK R   D  IVALK++  H+ +  F     REI+ L++L ++ N++ L E          R+     +V  ++  DL+ ++        +  +   S  +IK +M+Q+L G+   H N I+HRD+K  NLLI + G+L++ADFG AR
Sbjct:   38 EVYKARAKRDGSIVALKKILMHNERDGFPITALREIKLLKMLSHT-NIMQLREMAVERSKGEGRKKPSMYMVFPYMEHDLSGLL--------ENPEVHFSEAQIKCYMIQLLEGLKYLHGNCILHRDMKAANLLISNQGILQIADFGLAR 178          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: SNF1_CANGA (Carbon catabolite-derepressing protein kinase OS=Candida glabrata GN=SNF1 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.688e-12
Identity = 48/146 (32.88%), Postives = 79/146 (54.11%), Query Frame = 3
Query:   81 REIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARILL-GNEFDAPDGNSQPCEPNAPYQDNMSEAPQVDL 515
            REI  L++L++ P+++ L++    +DE  ++V+E+   +L   I +  K  E          E +R+  QI+S V+ CHR+ IVHRDLKP NLL+ +   +K+ADFG + I+  GN      G+     P       +   P+VD+
Sbjct:   86 REISYLRLLRH-PHIIKLYDVIKSKDE-IIMVIEYAGNELFDYIVQRNKMSEQ---------EARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEV-ISGKLYAGPEVDV 219          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDKL5_MOUSE (Cyclin-dependent kinase-like 5 OS=Mus musculus GN=Cdkl5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.688e-12
Identity = 49/144 (34.03%), Postives = 77/144 (53.47%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVHDYQ-------SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARIL 416
            V K R    + IVA+K+  D +       +  RE++ L+ L+   N+V L E F R  +   LV E++  ++  ++ E           G+   ++K ++ Q++  +  CH+N IVHRD+KP NLLI  + VLKL DFG AR L
Sbjct:   27 VLKCRHKETHEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQE-NIVELKEAFRRRGK-LYLVFEYVEKNMLELLEEMPN--------GVPPEKVKSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNL 160          
BLAST of FC878501 vs. ExPASy Swiss-Prot
Match: CDKL5_HUMAN (Cyclin-dependent kinase-like 5 OS=Homo sapiens GN=CDKL5 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.688e-12
Identity = 49/144 (34.03%), Postives = 77/144 (53.47%), Query Frame = 3
Query:    6 VYKGRRLSDNLIVALKEVHDYQ-------SAFREIEALQILQNSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIAESKKKREDRGDRGISVGEIKRWMVQILSGVDACHRNTIVHRDLKPGNLLIGDDGVLKLADFGQARIL 416
            V K R    + IVA+K+  D +       +  RE++ L+ L+   N+V L E F R  +   LV E++  ++  ++ E           G+   ++K ++ Q++  +  CH+N IVHRD+KP NLLI  + VLKL DFG AR L
Sbjct:   27 VLKCRHKETHEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQE-NIVELKEAFRRRGK-LYLVFEYVEKNMLELLEEMPN--------GVPPEKVKSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNL 160          
The following BLAST results are available for this feature:
BLAST of FC878501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CDC2H_PLACH9.893e-1338.03Cell division control protein 2 homolog OS=Plasmod... [more]
CDC2H_PLABA9.893e-1338.03Cell division control protein 2 homolog OS=Plasmod... [more]
CDKL4_MOUSE1.292e-1235.17Cyclin-dependent kinase-like 4 OS=Mus musculus GN=... [more]
CDKF3_ORYSJ1.292e-1233.85Cyclin-dependent kinase F-3 OS=Oryza sativa subsp.... [more]
CDC2C_DROME1.292e-1239.44Cell division control protein 2 cognate OS=Drosoph... [more]
CC2H1_TRYCO1.292e-1236.18Cell division control protein 2 homolog 1 OS=Trypa... [more]
BUR1_EMENI1.292e-1233.33Serine/threonine-protein kinase bur1 OS=Emericella... [more]
SNF1_CANGA1.688e-1232.88Carbon catabolite-derepressing protein kinase OS=C... [more]
CDKL5_MOUSE1.688e-1234.03Cyclin-dependent kinase-like 5 OS=Mus musculus GN=... [more]
CDKL5_HUMAN1.688e-1234.03Cyclin-dependent kinase-like 5 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22DH11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878501 ID=FC878501; Name=FC878501; organism=Citrus clementina; type=EST; length=872bp
CCGACGTGTACAAGGGCCGGCGATTATCGGACAACCTGATCGTCGCGCTG
AAGGAGGTCCACGACTACCAATCGGCGTTCCGAGAAATCGAGGCGCTGCA
GATCCTACAGAACTCACCGAACGTGGTGGTTTTGCACGAGTACTTTTGGC
GGGAGGACGAGGACGCCGTGCTGGTGCTGGAGTTTCTGAGGACCGATTTG
GCGACGGTGATTGCGGAGTCCAAGAAGAAGAGAGAGGACCGGGGCGATCG
TGGAATCAGCGTCGGTGAGATTAAGAGATGGATGGTCCAGATTTTGTCTG
GAGTGGACGCCTGTCACAGGAATACGATCGTTCATCGGGATTTGAAGCCT
GGGAATTTGTTGATCGGCGATGATGGGGTTCTAAAGTTGGCCGATTTTGG
CCAGGCAAGGATACTCCTGGGTAATGAATTCGATGCTCCTGATGGTAATT
CTCAGCCTTGTGAACCCAATGCTCCATATCAAGATAACATGTCTGAAGCT
CCACAAGTTGATCTTGAGGTAGAAGATGCATCCCCAGAAGGAGATGTTAA
TCAAGAGCAGGGTATAATGAGTAGAGAAGATTATTTTAGGGCATTAGACG
AACTAAAGGCTAAGAACTCCATAGATGAGACTGATAAGGATACGCATGTT
CATGATGGAGATACGTCATGTTTTGCAACATGCACAACCAGCGATGTAGA
AGATGATCTTTTCAAGGGTACCTATTCTTATGACGCAGAGGATGGTGGAG
ATGGTAGACAAGGTGCCCTCACTTCCTGTGTTGGAACTCGCTGGTTCAGG
GCCCCTGAACTACTTTATGGATCCACATCCTATGGACTTGAGGTTGATCT
GTGGTCATTGGGCTGCATATTT
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