FC878533

Overview
NameFC878533
Unique NameFC878533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878533 vs. ExPASy Swiss-Prot
Match: HSP71_CERAE (Heat shock 70 kDa protein 1 OS=Cercopithecus aethiops GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 1.650e-78
Identity = 141/169 (83.43%), Postives = 154/169 (91.12%), Query Frame = 2
Query:   38 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFDVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDSGTISGLNV 544
            MAKA A+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA+NP NT+FDAKRLIGRKF D  VQ+DMKHWPF V++DG KPK++V+YKGE K F+PEE+SSMVLTKMKE AEA LG  V NAVITVPAYFNDSQRQATKD+G I+GLNV
Sbjct:    1 MAKAAAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDPVVQSDMKHWPFQVINDGDKPKVQVSYKGETKAFYPEEISSMVLTKMKEIAEADLGYPVTNAVITVPAYFNDSQRQATKDAGVIAGLNV 169          
BLAST of FC878533 vs. ExPASy Swiss-Prot
Match: HSP76_PIG (Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 2.814e-78
Identity = 135/168 (80.36%), Postives = 158/168 (94.05%), Query Frame = 2
Query:   41 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFDVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDSGTISGLNV 544
            A+  A+GIDLGTTYSCVGVFQHG+VEI+ANDQGNRTTPSYVAFTDTERL+GDAAK+Q A+NP NT+FDAKRLIGRKF D TVQ+D+KHWPF VVS+GGKPK++V+Y+GEDK F+PEE+SSMVL+KMKETAEAYLG+ V++AVITVPAYFNDSQRQATKD+G I+GLNV
Sbjct:    4 AREVAIGIDLGTTYSCVGVFQHGRVEILANDQGNRTTPSYVAFTDTERLVGDAAKSQAALNPQNTVFDAKRLIGRKFADPTVQSDLKHWPFQVVSEGGKPKVRVSYRGEDKAFYPEEISSMVLSKMKETAEAYLGQPVRHAVITVPAYFNDSQRQATKDAGAIAGLNV 171          
BLAST of FC878533 vs. ExPASy Swiss-Prot
Match: HS71L_MACFA (Heat shock 70 kDa protein 1-like OS=Macaca fascicularis GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 2.814e-78
Identity = 140/168 (83.33%), Postives = 154/168 (91.67%), Query Frame = 2
Query:   41 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFDVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDSGTISGLNV 544
            AK  A+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NT+FDAKRLIGRKF D  VQ+DMK WPF V+++GGKPK+ V+YKGE+K F+PEE+SSMVLTKMKETAEA+LG  V NAVITVPAYFNDSQRQATKD+G I+GLNV
Sbjct:    4 AKGIAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRKFNDPVVQSDMKLWPFQVINEGGKPKVLVSYKGENKAFYPEEISSMVLTKMKETAEAFLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNV 171          
BLAST of FC878533 vs. ExPASy Swiss-Prot
Match: HS71L_HUMAN (Heat shock 70 kDa protein 1-like OS=Homo sapiens GN=HSPA1L PE=1 SV=2)

HSP 1 Score: 290.812 bits (743), Expect = 2.814e-78
Identity = 140/168 (83.33%), Postives = 154/168 (91.67%), Query Frame = 2
Query:   41 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFDVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDSGTISGLNV 544
            AK  A+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NT+FDAKRLIGRKF D  VQADMK WPF V+++GGKPK+ V+YKGE+K F+PEE+SSMVLTK+KETAEA+LG  V NAVITVPAYFNDSQRQATKD+G I+GLNV
Sbjct:    4 AKGIAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRKFNDPVVQADMKLWPFQVINEGGKPKVLVSYKGENKAFYPEEISSMVLTKLKETAEAFLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNV 171          
BLAST of FC878533 vs. ExPASy Swiss-Prot
Match: HSP76_HUMAN (Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSPA6 PE=1 SV=2)

HSP 1 Score: 289.656 bits (740), Expect = 6.269e-78
Identity = 136/164 (82.93%), Postives = 156/164 (95.12%), Query Frame = 2
Query:   53 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFDVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDSGTISGLNV 544
            AVGIDLGTTYSCVGVFQ G+VEI+ANDQGNRTTPSYVAFTDTERL+GDAAK+Q A+NP+NT+FDAKRLIGRKF D TVQ+DMKHWPF VVS+GGKPK++V Y+GEDKTF+PEE+SSMVL+KMKETAEAYLG+ V++AVITVPAYFNDSQRQATKD+G I+GLNV
Sbjct:    8 AVGIDLGTTYSCVGVFQQGRVEILANDQGNRTTPSYVAFTDTERLVGDAAKSQAALNPHNTVFDAKRLIGRKFADTTVQSDMKHWPFRVVSEGGKPKVRVCYRGEDKTFYPEEISSMVLSKMKETAEAYLGQPVKHAVITVPAYFNDSQRQATKDAGAIAGLNV 171          
BLAST of FC878533 vs. ExPASy Swiss-Prot
Match: HS71A_PIG (Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA1A PE=3 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 2.382e-77
Identity = 139/169 (82.25%), Postives = 152/169 (89.94%), Query Frame = 2
Query:   38 MAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFDVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDSGTISGLNV 544
            MAK+ A+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPS VAFTDTERLIGDAAKNQVA+NP NT+FDAKRLIGRKF D  VQ DMKHWPF V++DG KPK++V+YKGE K F+PEE+SSMVLTKMKE AE YLG  V NAVITVPAYFNDSQRQATKD+G I+GLNV
Sbjct:    1 MAKSVAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSSVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDPVVQGDMKHWPFRVINDGDKPKVQVSYKGETKGFYPEEISSMVLTKMKEIAEGYLGHPVSNAVITVPAYFNDSQRQATKDAGVIAGLNV 169          
BLAST of FC878533 vs. ExPASy Swiss-Prot
Match: HS71L_RAT (Heat shock 70 kDa protein 1-like OS=Rattus norvegicus GN=Hspa1l PE=2 SV=2)

HSP 1 Score: 287.345 bits (734), Expect = 3.111e-77
Identity = 138/167 (82.63%), Postives = 152/167 (91.02%), Query Frame = 2
Query:   44 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFDVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDSGTISGLNV 544
            K  A+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NT+FDAKRLIGRKF D  VQ+DMK WPF V+++ GKPK+ V+YKGE K F+PEE+SSMVLTKMKETAEA+LG +V NAVITVPAYFNDSQRQATKD+G I+GLNV
Sbjct:    5 KGMAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRKFNDPVVQSDMKLWPFQVINEAGKPKVLVSYKGEKKAFYPEEISSMVLTKMKETAEAFLGHSVTNAVITVPAYFNDSQRQATKDAGVIAGLNV 171          
BLAST of FC878533 vs. ExPASy Swiss-Prot
Match: HS71L_MOUSE (Heat shock 70 kDa protein 1-like OS=Mus musculus GN=Hspa1l PE=2 SV=4)

HSP 1 Score: 287.345 bits (734), Expect = 3.111e-77
Identity = 138/167 (82.63%), Postives = 151/167 (90.42%), Query Frame = 2
Query:   44 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFDVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDSGTISGLNV 544
            K  A+GIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP NT+FDAKRLIGRKF D  VQ+DMK WPF V+++ GKPK+ V+YKGE K F+PEE+SSMVLTKMKETAEA+LG  V NAVITVPAYFNDSQRQATKD+G I+GLNV
Sbjct:    5 KGMAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRKFNDPVVQSDMKLWPFQVINEAGKPKVMVSYKGEKKAFYPEEISSMVLTKMKETAEAFLGHNVTNAVITVPAYFNDSQRQATKDAGVIAGLNV 171          
BLAST of FC878533 vs. ExPASy Swiss-Prot
Match: HSP76_SAGOE (Heat shock 70 kDa protein 6 OS=Saguinus oedipus GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 4.063e-77
Identity = 136/164 (82.93%), Postives = 156/164 (95.12%), Query Frame = 2
Query:   53 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFDVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDSGTISGLNV 544
            AVGIDLGTTYSCVGVFQ G+VEI+ANDQGNRTTPSYVAFTDTERL+GDAAK+Q A+NP NT+FDAKRLIGRKF DATVQADMKHWPF VVS+G KPK++V+Y+GEDK+F+PEE+SSMVL+KMKETAEAYLG+ V++AVITVPAYFNDSQRQATKD+G I+GLNV
Sbjct:    8 AVGIDLGTTYSCVGVFQQGRVEILANDQGNRTTPSYVAFTDTERLVGDAAKSQAALNPLNTVFDAKRLIGRKFADATVQADMKHWPFQVVSEGCKPKVRVSYRGEDKSFYPEEISSMVLSKMKETAEAYLGQPVKHAVITVPAYFNDSQRQATKDAGAIAGLNV 171          
BLAST of FC878533 vs. ExPASy Swiss-Prot
Match: HSP75_DROME (Major heat shock 70 kDa protein Bc OS=Drosophila melanogaster GN=Hsp70Bc PE=2 SV=2)

HSP 1 Score: 286.189 bits (731), Expect = 6.931e-77
Identity = 137/165 (83.03%), Postives = 151/165 (91.52%), Query Frame = 2
Query:   50 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFDVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDSGTISGLNV 544
            PA+GIDLGTTYSCVGV+QHGKVEIIANDQGNRTTPSYVAFTD+ERLIGD AKNQVAMNP NT+FDAKRLIGRK++D  +  DMKHWPF VVSDGGKPKI V YKGE K F PEE+SSMVLTKMKETAEAYLG+++ +AVITVPAYFNDSQRQATKD+G I+GLNV
Sbjct:    2 PAIGIDLGTTYSCVGVYQHGKVEIIANDQGNRTTPSYVAFTDSERLIGDPAKNQVAMNPRNTVFDAKRLIGRKYDDPKIAEDMKHWPFKVVSDGGKPKIGVEYKGESKRFAPEEISSMVLTKMKETAEAYLGESITDAVITVPAYFNDSQRQATKDAGHIAGLNV 166          
The following BLAST results are available for this feature:
BLAST of FC878533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP71_CERAE1.650e-7883.43Heat shock 70 kDa protein 1 OS=Cercopithecus aethi... [more]
HSP76_PIG2.814e-7880.36Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6... [more]
HS71L_MACFA2.814e-7883.33Heat shock 70 kDa protein 1-like OS=Macaca fascicu... [more]
HS71L_HUMAN2.814e-7883.33Heat shock 70 kDa protein 1-like OS=Homo sapiens G... [more]
HSP76_HUMAN6.269e-7882.93Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSP... [more]
HS71A_PIG2.382e-7782.25Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA... [more]
HS71L_RAT3.111e-7782.63Heat shock 70 kDa protein 1-like OS=Rattus norvegi... [more]
HS71L_MOUSE3.111e-7782.63Heat shock 70 kDa protein 1-like OS=Mus musculus G... [more]
HSP76_SAGOE4.063e-7782.93Heat shock 70 kDa protein 6 OS=Saguinus oedipus GN... [more]
HSP75_DROME6.931e-7783.03Major heat shock 70 kDa protein Bc OS=Drosophila m... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YP20RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YP20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878533 ID=FC878533; Name=FC878533; organism=Citrus clementina; type=EST; length=546bp
CTGATTTTACGACTGAAAATATAGTAAATTATTTAATATGGCCAAGGCAC
CCGCAGTAGGTATCGACTTGGGCACCACTTACTCGTGCGTGGGAGTATTC
CAGCACGGTAAGGTGGAGATCATCGCCAACGACCAGGGCAACAGGACTAC
ACCCTCATATGTAGCCTTCACCGATACGGAGCGTCTCATCGGAGATGCTG
CCAAGAACCAGGTTGCGATGAACCCCAACAACACCATCTTTGATGCCAAA
CGTCTTATTGGACGCAAGTTCGAAGATGCCACAGTCCAAGCTGACATGAA
ACATTGGCCTTTTGATGTCGTAAGTGATGGAGGTAAACCAAAGATCAAGG
TAGCATACAAGGGTGAAGACAAAACATTCTTCCCCGAAGAAGTTAGCTCA
ATGGTACTCACAAAAATGAAGGAAACTGCCGAGGCATACCTTGGCAAAAC
GGTGCAGAATGCAGTAATCACGGTTCCAGCCTATTTCAATGATTCACAGA
GGCAAGCCACAAAAGATTCCGGTACCATCTCTGGCTTAAACGTTTT
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