FC878534

Overview
NameFC878534
Unique NameFC878534
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length898
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878534 vs. ExPASy Swiss-Prot
Match: SUT2_ORYSI (Sucrose transport protein 2 OS=Oryza sativa subsp. indica GN=SUT2M PE=2 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 6.651e-60
Identity = 115/258 (44.57%), Postives = 162/258 (62.79%), Query Frame = 1
Query:  136 KIVMVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDT---CKSRFGRRRPXXXXXXXXXXXXXXXXXYAADIGHSAGDSVTD-SVKTRAIIIFVIGFWILDVANNTLQGPCRALLADLSGSSNKKTRTANSFFSFFMAVGNVLGYAAGSYTHLYHMLPFTKSKACDVYCANLKTCXXXXXXXXXXXXXXXXXYVTEQRLEEIDDKETAPSTKDPFFSEIFGALKGVQKPMWILL 897
            K++  AS+A GVQFGWALQLSLLTPYVQ LGIPH ++SL+WLCGP+SG++VQP+VG  SD      S  GRRRP                 ++AD+G   GDS+T  S +  AII++++GFW+LDV NN  QGPCRA LADL+ +  ++TR AN++FS FMA+GN+LGYA G+Y+  Y + PFT + +C + CANLK+                   V E +    D+ +   + ++ F  E+FG+ +    P+W++L
Sbjct:   26 KLLRAASVACGVQFGWALQLSLLTPYVQELGIPHAFASLVWLCGPLSGLLVQPLVGHLSDRIAPAASPLGRRRPFIAAGAASIAAAVLTVGFSADLGRIFGDSITPGSTRLGAIIVYLVGFWLLDVGNNATQGPCRAFLADLTENDPRRTRIANAYFSLFMALGNILGYATGAYSGWYKIFPFTVTPSCSISCANLKSAFLLDIIILVVTTCITVASVQEPQSLGSDEADHPSTEQEAFLWELFGSFRYFTLPVWMVL 283          
BLAST of FC878534 vs. ExPASy Swiss-Prot
Match: SUC3_ARATH (Sucrose transport protein SUC3 OS=Arabidopsis thaliana GN=SUC3 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.535e-53
Identity = 102/197 (51.78%), Postives = 132/197 (67.01%), Query Frame = 1
Query:  139 IVMVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXYAADIGHSAGD-----SVTDSVKTRAIIIFVIGFWILDVANNTLQGPCRALLADLSGSSNKKTRTANSFFSFFMAVGNVLGYAAGSYTHLYHMLPFTKSKACDVYCANLK 714
            +V+  ++AAGVQFGWALQLSLLTPY+Q LGI H +SS IWLCGPI+G++VQP VG  SD C S++GRRRP                 ++ADIG+  GD     S     +TRA ++F+IGFW+LD+ANNT+QGP RALLADLSG   +   TAN+ F  +MA+GN+LG++AG+        PF  S+AC   C NLK
Sbjct:   63 LVLSCTVAAGVQFGWALQLSLLTPYIQTLGISHAFSSFIWLCGPITGLVVQPFVGIWSDKCTSKYGRRRPFILVGSFMISIAVIIIGFSADIGYLLGDSKEHCSTFKGTRTRAAVVFIIGFWLLDLANNTVQGPARALLADLSGPDQR--NTANAVFCLWMAIGNILGFSAGASGKWQEWFPFLTSRACCAACGNLK 257          
BLAST of FC878534 vs. ExPASy Swiss-Prot
Match: SUT1_SCHPO (General alpha-glucoside permease OS=Schizosaccharomyces pombe GN=sut1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.215e-22
Identity = 64/191 (33.51%), Postives = 97/191 (50.79%), Query Frame = 1
Query:  130 MWKIVMVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXYAADIGHSAGDSVTDSVKTRAIIIFVIGFWILDVANNTLQGPCRALLADLSGSSNKKTRTANSFFSFFMAVGNVLGYAAGSYTHLYHMLPFTKSKACDVYC 702
            ++ I +  S+  GVQ  W+++L   TPY+  LG+  +W+S+IW+ GP++G+++QPI G  SD   SR GRRRP                 +A DI      +    +K   I++  I  ++LDVA N +    R+L+ D   S  +    ANS+    + VGNVLGY  G Y  LY +  F       V+C
Sbjct:   34 LYLIALTVSLL-GVQLTWSVELGYGTPYLFSLGLRKEWTSIIWIAGPLTGILIQPIAGILSDRVNSRIGRRRPFMLCASLLGTFSLFLMGWAPDICLFIFSNEV-LMKRVTIVLATISIYLLDVAVNVVMASTRSLIVDSVRSDQQ--HEANSWAGRMIGVGNVLGYLLG-YLPLYRIFSFLNFTQLQVFC 219          
BLAST of FC878534 vs. ExPASy Swiss-Prot
Match: S45A4_MOUSE (Solute carrier family 45 member 4 OS=Mus musculus GN=Slc45a4 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.646e-16
Identity = 50/166 (30.12%), Postives = 83/166 (50.00%), Query Frame = 1
Query:  142 VMVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXYAADIGHSAGDSVTDSVKTRAIIIFVIGFWILDVANNTLQGPCRALLADLSGSSNKKTRTANSFFSFFMAVGNVLGYAAG 639
            VM  ++  G +F +A++ +L+TP +  +G+P K+ SL W   P+ G+I  P++G  SD C   +GRRRP                   + IG + GD    S +   I++ V+G  +LD + +  +GP RA L D+  S  +    A +  +F   +G  +GY  G
Sbjct:   54 VMHGAVMFGREFCYAMETALVTPILLQIGLPEKYYSLTWFLSPVLGLIFTPLIGSASDRCTLSWGRRRPFILALCVGVLIGVALFLNGSAIGLALGD--VPSRQPIGIVLTVLGVVVLDFSADATEGPIRAYLLDVVDSEEQD--MALNIHAFSAGLGGAIGYVLG 215          
BLAST of FC878534 vs. ExPASy Swiss-Prot
Match: S45A1_RAT (Proton-associated sugar transporter A OS=Rattus norvegicus GN=Slc45a1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.456e-16
Identity = 46/169 (27.22%), Postives = 82/169 (48.52%), Query Frame = 1
Query:  133 WKIVMVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXYAADIGHSAGDSVTDSVKTRAIIIFVIGFWILDVANNTLQGPCRALLADLSGSSNKKTRTANSFFSFFMAVGNVLGYAAG 639
            W+++    I  G++F +A++ + +TP +  +G+P +  SL+W   PI G ++QP++G  SD C SRFGRRRP                    DIG +  D+ T+      I++ V G  ++D + ++   P  A + D+ G  ++      +  +    +G   GY  G
Sbjct:   85 WELLFNGCILFGIEFSYAMETAYVTPVLLQMGLPDQLYSLVWFISPILGFLLQPLLGAWSDRCTSRFGRRRPFILVLAIGALLGLSLLLNGRDIGMALADTATN--HKWGILLTVCGVVLMDFSADSADNPSHAYMMDVCGPVDQD--RGLNIHALMAGLGGGFGYVVG 249          
BLAST of FC878534 vs. ExPASy Swiss-Prot
Match: S45A1_MOUSE (Proton-associated sugar transporter A OS=Mus musculus GN=Slc45a1 PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 3.456e-16
Identity = 46/169 (27.22%), Postives = 82/169 (48.52%), Query Frame = 1
Query:  133 WKIVMVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXYAADIGHSAGDSVTDSVKTRAIIIFVIGFWILDVANNTLQGPCRALLADLSGSSNKKTRTANSFFSFFMAVGNVLGYAAG 639
            W+++    I  G++F +A++ + +TP +  +G+P +  SL+W   PI G ++QP++G  SD C SRFGRRRP                    DIG +  D+ T+      I++ V G  ++D + ++   P  A + D+ G  ++      +  +    +G   GY  G
Sbjct:   85 WELLFNGCILFGIEFSYAMETAYVTPVLLQMGLPDQLYSLVWFISPILGFLLQPLLGAWSDRCTSRFGRRRPFILVLAIGALLGLSLLLNGRDIGMALADTATN--HKWGILLTVCGVVLMDFSADSADNPSHAYMMDVCGPVDQD--RGLNIHALMAGLGGGFGYVVG 249          
BLAST of FC878534 vs. ExPASy Swiss-Prot
Match: S45A4_HUMAN (Solute carrier family 45 member 4 OS=Homo sapiens GN=SLC45A4 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.313e-15
Identity = 49/166 (29.52%), Postives = 83/166 (50.00%), Query Frame = 1
Query:  142 VMVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXYAADIGHSAGDSVTDSVKTRAIIIFVIGFWILDVANNTLQGPCRALLADLSGSSNKKTRTANSFFSFFMAVGNVLGYAAG 639
            VM  ++  G +F +A++ +L+TP +  +G+P ++ SL W   PI G+I  P++G  SD C   +GRRRP                   + IG + GD    + +   I++ V+G  +LD + +  +GP RA L D+  S  +    A +  +F   +G  +GY  G
Sbjct:   53 VMHGAVMFGREFCYAMETALVTPILLQIGLPEQYYSLTWFLSPILGLIFTPLIGSASDRCTLSWGRRRPFILALCVGVLFGVALFLNGSAIGLALGD--VPNRQPIGIVLTVLGVVVLDFSADATEGPIRAYLLDVVDSEEQD--MALNIHAFSAGLGGAIGYVLG 214          
BLAST of FC878534 vs. ExPASy Swiss-Prot
Match: S45A2_MOUSE (Membrane-associated transporter protein OS=Mus musculus GN=Slc45a2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.206e-14
Identity = 50/182 (27.47%), Postives = 88/182 (48.35%), Query Frame = 1
Query:  136 KIVMVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXYAADIGHSAGDSVTDSVKTR-------AIIIFVIGFWILDVANNTLQGPCRALLADLSGSSNKKTRTANSFFSFFMAVGNVLGYAAGS--YTHL 654
            ++VM +    G +F +A++ + +TP +  +G+P    S++WL  PI G ++QP+VG  SD C++R+GRRRP                       +  GD+V  ++          AI I ++G  + D + + + GP +A L D+    +K+      + + F   G  LGY  G+  + HL
Sbjct:   34 RLVMHSMAMFGREFCYAVEAAYVTPVLLSVGLPKSLYSMVWLLSPILGFLLQPVVGSASDHCRARWGRRRPYILTLAIMMLLGMAL--------YLNGDAVVSALVANPRQKLIWAISITMVGVVLFDFSADFIDGPIKAYLFDVCSHQDKE--KGLHYHALFTGFGGALGYILGAIDWVHL 205          
BLAST of FC878534 vs. ExPASy Swiss-Prot
Match: S45A1_HUMAN (Proton-associated sugar transporter A OS=Homo sapiens GN=SLC45A1 PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 9.411e-14
Identity = 45/161 (27.95%), Postives = 79/161 (49.07%), Query Frame = 1
Query:  157 IAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPISGMIVQPIVGFHSDTCKSRFGRRRPXXXXXXXXXXXXXXXXXYAADIGHSAGDSVTDSVKTRAIIIFVIGFWILDVANNTLQGPCRALLADLSGSSNKKTRTANSFFSFFMAVGNVLGYAAG 639
            I  G++F +A++ + +TP +  +G+P +  SL+W   PI G ++QP++G  SD C SRFGRRRP                    DIG +  D VT + K   +++ V G  ++D + ++   P  A + D+   +++      +  +    +G   GY  G
Sbjct:  127 ILFGIEFSYAMETAYVTPVLLQMGLPDQLYSLVWFISPILGFLLQPLLGAWSDRCTSRFGRRRPFILVLAIGALLGLSLLLNGRDIGIALAD-VTGNHKW-GLLLTVCGVVLMDFSADSADNPSHAYMMDVCSPADQD--RGLNIHALLAGLGGGFGYVVG 283          
The following BLAST results are available for this feature:
BLAST of FC878534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
SUT2_ORYSI6.651e-6044.57Sucrose transport protein 2 OS=Oryza sativa subsp.... [more]
SUC3_ARATH3.535e-5351.78Sucrose transport protein SUC3 OS=Arabidopsis thal... [more]
SUT1_SCHPO4.215e-2233.51General alpha-glucoside permease OS=Schizosaccharo... [more]
S45A4_MOUSE2.646e-1630.12Solute carrier family 45 member 4 OS=Mus musculus ... [more]
S45A1_RAT3.456e-1627.22Proton-associated sugar transporter A OS=Rattus no... [more]
S45A1_MOUSE3.456e-1627.22Proton-associated sugar transporter A OS=Mus muscu... [more]
S45A4_HUMAN1.313e-1529.52Solute carrier family 45 member 4 OS=Homo sapiens ... [more]
S45A2_MOUSE7.206e-1427.47Membrane-associated transporter protein OS=Mus mus... [more]
S45A1_HUMAN9.411e-1427.95Proton-associated sugar transporter A OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA18DG09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878534 ID=FC878534; Name=FC878534; organism=Citrus clementina; type=EST; length=898bp
CGATATTTTGGTAGCTTAATTAGTTGGCTGGCCATGGAGAGTACCGAAGC
AGGCGCAGCTGCAGCAGCACCAACAAAGAATCAATCCTCAATTGAGTTAC
GGCAGCCACCACCTCCGCCGTCGTCCCCGATGTGGAAGATCGTAATGGTG
GCGTCCATAGCAGCGGGGGTGCAATTCGGGTGGGCCCTGCAGCTCTCTCT
TTTGACCCCCTACGTTCAGCTCCTGGGCATCCCTCACAAATGGTCTTCCC
TCATTTGGCTCTGCGGCCCCATCTCCGGCATGATCGTCCAGCCCATCGTC
GGCTTCCACAGCGACACCTGCAAATCCCGCTTCGGCCGTCGCCGCCCCTT
CATTCTCGCCGGCGCCGTCCTCGTCGCCATCGCTGTGTTTCTCATCGGCT
ACGCCGCCGACATAGGCCACTCCGCGGGCGACTCCGTTACCGATTCCGTC
AAAACCCGCGCCATCATCATCTTCGTCATCGGCTTCTGGATTCTCGACGT
TGCGAATAACACATTACAAGGCCCATGCAGAGCCCTCCTCGCCGATCTCT
CCGGCAGCAGCAACAAGAAAACAAGAACCGCAAACTCTTTTTTCTCCTTC
TTCATGGCCGTCGGTAACGTGCTTGGCTATGCCGCCGGCTCCTACACTCA
CTTGTACCACATGCTTCCGTTCACAAAGTCAAAAGCTTGCGACGTTTACT
GTGCAAATTTGAAAACGTGCTTCTTCCTCTCCATAGCTCTGCTAATAACC
CTAACGACAATAGCACTGTTTTACGTAACTGAGCAAAGATTAGAAGAGAT
TGATGATAAAGAAACGGCGCCGTCCACGAAGGATCCATTTTTCAGCGAGA
TATTTGGTGCATTGAAAGGGGTGCAAAAGCCTATGTGGATCCTACTTG
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