FC878566
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878566 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2) HSP 1 Score: 136.732 bits (343), Expect = 1.539e-31 Identity = 75/206 (36.41%), Postives = 107/206 (51.94%), Query Frame = 3 Query: 237 NIIDRP--LHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRA-IYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFA 845 N+++RP L + DP GNFAPV E P V G++P + G Y RNG NP P H F+GDGM+H++++ G A Y+ R+ +T + + ER G +FP +G + + AR G V+ G G+AN E DLPY ++ +GD+ET+GR+DFD +L +M AHPK D T E A Sbjct: 105 NVLERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGANPCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHA 310
BLAST of FC878566 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 4.478e-31 Identity = 79/209 (37.80%), Postives = 115/209 (55.02%), Query Frame = 3 Query: 228 LFTNIIDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNV--FSGFYGLVDM-VQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETF 842 L ++ + +H + P H +GNFAP+ DE P + V G LP+ L G ++R GPNP+ H+F+GDGM+H +++ G+A Y SRYVKT + K E G F + GF+GL+ + VQ + + ++L + G G ANT E+D PY+IK +GD++TLG D+D+ L S TAHPK D T E F Sbjct: 29 LLERLVVKLMHDASLPLHYLSGNFAPIRDETPPVKDLPVHGFLPECLNGEFVRVGPNPKFDAVAGYHWFDGDGMIHGVRIKDGKATYVSRYVKTSRLKQEEFFGAAKFMKIGDLKGFFGLLMVNVQQLRTKLKIL----DNTYGNGTANTALVYHHGKLLALQEADKPYVIKVLEDGDLQTLGIIDYDKRLTHSFTAHPKVDPVTGEMF 233 The following BLAST results are available for this feature:
BLAST of FC878566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878566 ID=FC878566; Name=FC878566; organism=Citrus clementina; type=EST; length=845bpback to top |