FC878566

Overview
NameFC878566
Unique NameFC878566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length845
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878566 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.539e-31
Identity = 75/206 (36.41%), Postives = 107/206 (51.94%), Query Frame = 3
Query:  237 NIIDRP--LHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRA-IYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFA 845
            N+++RP  L  + DP     GNFAPV E  P     V G++P  + G Y RNG NP   P    H F+GDGM+H++++  G A  Y+ R+ +T + + ER  G  +FP      +G   + +     AR   G V+   G G+AN              E DLPY ++   +GD+ET+GR+DFD +L  +M AHPK D  T E  A
Sbjct:  105 NVLERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGANPCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHA 310          
BLAST of FC878566 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.478e-31
Identity = 79/209 (37.80%), Postives = 115/209 (55.02%), Query Frame = 3
Query:  228 LFTNIIDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNV--FSGFYGLVDM-VQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETF 842
            L   ++ + +H +  P H  +GNFAP+ DE  P +   V G LP+ L G ++R GPNP+       H+F+GDGM+H +++  G+A Y SRYVKT + K E   G   F  +    GF+GL+ + VQ + +  ++L    +   G G ANT             E+D PY+IK   +GD++TLG  D+D+ L  S TAHPK D  T E F
Sbjct:   29 LLERLVVKLMHDASLPLHYLSGNFAPIRDETPPVKDLPVHGFLPECLNGEFVRVGPNPKFDAVAGYHWFDGDGMIHGVRIKDGKATYVSRYVKTSRLKQEEFFGAAKFMKIGDLKGFFGLLMVNVQQLRTKLKIL----DNTYGNGTANTALVYHHGKLLALQEADKPYVIKVLEDGDLQTLGIIDYDKRLTHSFTAHPKVDPVTGEMF 233          
The following BLAST results are available for this feature:
BLAST of FC878566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NCED1_MAIZE1.539e-3136.419-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]
CCD1_ARATH4.478e-3137.80Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA80CC01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA80CC01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878566 ID=FC878566; Name=FC878566; organism=Citrus clementina; type=EST; length=845bp
AAAAAAAACATCATCCACTCTACATATCTACCAAAAGAATGGATCTCATG
AATTACTTATCCTTAAAGATATCATACAATTCTCCACCAAAACCAAAGTT
CACATATTACAATCACATCAACGAACAAAATATCCCATTCCGTTCTTCTC
AAAAGCCAAAAATATGTGCACCCATACAATCTTTAATGGGAACAAATTCA
TCCTACAACACCAAATCCGCGCCATCATTGTTTACAAACATTATTGATCG
TCCTCTTCATCCTTCTGTTGATCCAAAGCATGTCTTCACCGGAAACTTTG
CTCCGGTGGACGAGCTTGGCCCGACTGAGTGCCCGGTGGTTGATGGCAAG
CTTCCGGACTCTCTAACCGGCACGTACATCCGAAACGGACCAAACCCACA
GCACATGCCCCGTGGCCCTCTCCACTTCTTTGAAGGTGATGGCATGCTTC
ACTCAATGCAATTATCTAAAGGGCGTGCAATTTACAGTAGCCGCTATGTC
AAGACTTACAAGTACAAGCTCGAGAGAGATGCCGGTGGCCAAATTTTCCC
CAACGTCTTCTCAGGATTTTATGGGCTTGTGGATATGGTTCAATGTGTTG
CATCGACAGCAAGAGTGTTGATGGGTCACGTAAATCTCAAGAAAGGATTT
GGTTTGGCCAATACAAGTCTTGCTTTCTTTTCGTCTAAGCTTCTTGCTCT
TGGTGAGTCCGATTTGCCCTACATTATAAAATGTACTCGAGAAGGCGACA
TTGAGACTTTAGGGAGATGGGATTTTGATGAAGAATTATTTGCAAGCATG
ACTGCGCATCCTAAGACAGACATGACCACAAAGGAGACTTTTGCT
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