FC878605

Overview
NameFC878605
Unique NameFC878605
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length773
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878605 vs. ExPASy Swiss-Prot
Match: SUCC_PARDP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Paracoccus denitrificans (strain Pd 1222) GN=sucC PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.383e-35
Identity = 87/213 (40.85%), Postives = 122/213 (57.28%), Query Frame = 2
Query:  116 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPL 742
            +NIHEYQ   L+ +YG  V  G  V   DE K A  +   D    VVK+QI AGGRG G FK   +G KGGV + K  EE E+LA +MLG+ LVT QTG  GK V+++Y+ +   +  E+Y A+++DR T+    +  ++GG  IE++A   P  IV   +D  +G++D    +V   L    A     +  VK LY++F E D  +LEINPL
Sbjct:    1 MNIHEYQAKALLRQYGAPVSDGRVVMKADEAKAAAGEL--DGPLWVVKAQIHAGGRGKGHFKEKEAGEKGGVRLAKSVEEAEELARQMLGRTLVTHQTGETGKQVNRIYIEDGSDIERELYLALLVDRGTSRVSFVASTEGGMDIEEVAASTPEKIVSFSVDPASGLSDFHGRRVAFALGLSGAQVKQCVALVKNLYRMFIEKDMEMLEINPL 211          
BLAST of FC878605 vs. ExPASy Swiss-Prot
Match: SUCC_BACP2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus pumilus (strain SAFR-032) GN=sucC PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.383e-35
Identity = 86/220 (39.09%), Postives = 128/220 (58.18%), Query Frame = 2
Query:  116 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVA 772
            +NIHEYQG E++ KYG++VP G    + DE  KA ++   +    VVK+QI AGGRG         GGV I K K+EV+  A ++LG+ LVT QTGP+G+ + ++ + E   +  E Y  ++LDR T+  +++   +GGT IE++AEK P  IVKV ID   G+    A +V   +         A++ +  LY  F E DC++ EINPL  T   +++A
Sbjct:    1 MNIHEYQGKEILRKYGVSVPNGKVAFTPDEAVKASEEL--ESSVYVVKAQIHAGGRGKA-------GGVKIAKTKDEVKGFAEELLGKTLVTHQTGPEGREIKRLLIEEGCDIQKEYYVGLVLDRATSRIVLMASEEGGTEIEEVAEKTPEKIVKVVIDPAIGLQGYQAREVAFKINIPTKLVGQAVKFMTSLYNAFIEKDCSIAEINPLVVTGDGKVMA 211          
BLAST of FC878605 vs. ExPASy Swiss-Prot
Match: SUCB_TRIVA (Succinyl-CoA ligase [GDP-forming] subunit beta, hydrogenosomal OS=Trichomonas vaginalis PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.383e-35
Identity = 84/222 (37.84%), Postives = 130/222 (58.56%), Query Frame = 2
Query:  110 RRLNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTF-KSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLV 769
            R  NI E+Q  E+ AKY +     L   S +E  +A +    +    V+K+Q+  GGRG G + ++G K GVH VK  +E   +A +MLG  LVTKQTG  G +   V L + + +  E+YFAI+LDR+T  P++I  ++GG  IE++A  +P  I K  +D   GIT+E A  +   L       ++ + +++KL+KLF  SD T +E+NPLAET+  +++
Sbjct:    8 RNFNILEWQSKEICAKYNVAAGINLVARSPEEAAEAFRKM--NLPAAVIKAQVYCGGRGKGHWLETGFKSGVHFVKSADEAAKIAKEMLGHHLVTKQTGKDGLLCQAVMLSDPVEVKRELYFAILLDRQTQSPVVIASTEGGVEIEEVAAHHPEKIHKFVLDGVEGITEEVAKNISTKLGLTGKAYDNGVVEMQKLWKLFVGSDATQVEVNPLAETTDGRII 227          
BLAST of FC878605 vs. ExPASy Swiss-Prot
Match: SUCC_CHLCH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlorobium chlorochromatii (strain CaD3) GN=sucC PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.418e-35
Identity = 82/222 (36.94%), Postives = 130/222 (58.56%), Query Frame = 2
Query:  116 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPD--HKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVA 772
            +NIHEYQG +++ K+G+ VPKG+   S DE K+A +  F +     +VVK+QI AGGRG         GGV + K  EE  ++A +M+G  L+T QTGP+GK+VS++ + E + +  E Y  I LDR T+  +++  ++GG  IE +AE+ P  ++K+ ID   G+    A +    L  +     +A+  +  LYK +   D ++ EINPL  TS  +++A
Sbjct:    1 MNIHEYQGKDILRKFGVTVPKGIVAYSADEAKQAAEQLFAETGSSVVVVKAQIHAGGRGKA-------GGVKLAKSPEEAFEIARQMIGMTLITHQTGPEGKVVSRLLIEEGMGIEKEFYVGITLDRATSRNVLMVSTEGGMEIETVAEETPEKLLKIQIDPLFGMQGFQAREAAFFLGLEGEQFRNAVNFITALYKAYTSIDASVAEINPLVVTSEGKVIA 215          
BLAST of FC878605 vs. ExPASy Swiss-Prot
Match: SUCC_ALKMQ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Alkaliphilus metalliredigens (strain QYMF) GN=sucC PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.418e-35
Identity = 85/220 (38.64%), Postives = 130/220 (59.09%), Query Frame = 2
Query:  116 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVA 772
            +NIHEYQG E+M +YGI+VP+     +V+E  +A  D     + + VK+QI AGGRG         GGV I +  EE +  A  +L +IL+TKQTGP+GK+V++V + E L +  E Y +  +D  T+  ++IG  +GG  IE++AEK P+ I K  ID   G+    A ++   +    A   +A + +  +Y+LF E DC+++EINPL  T   ++VA
Sbjct:    1 MNIHEYQGKEIMKQYGISVPRSRITFTVEEAVQAAIDL--GCEVIAVKAQIHAGGRGKA-------GGVKITRSLEETKSAAEAILDKILITKQTGPEGKVVNQVLIEEGLKIEKECYLSCAVDSTTSTVVLIGSPEGGMDIEEVAEKTPHKIFKESIDPAIGLQQYQARRLAFNMGINEACLQEAAQCIMNIYRLFMEKDCSMVEINPLITTEEHKVVA 211          
BLAST of FC878605 vs. ExPASy Swiss-Prot
Match: SUCC_RHOCS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=sucC PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.770e-35
Identity = 86/222 (38.74%), Postives = 128/222 (57.66%), Query Frame = 2
Query:  116 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGL--KGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVA 772
            +NIHEYQ   L+ KYG+ VP+G    +++E +   ++        VVKSQI AGGRG G FK     KGGV +VK  ++V      MLG++LVTKQTGP+GK V ++Y+ E   +  E+Y +++LDR T+   I+  ++GG  IE++A   P  IVKV ID   G+    A KV   L  +        + +  +YK F + D +L+E+NPL  T   +++A
Sbjct:    1 MNIHEYQAKSLLKKYGVAVPRGGVAYTLEEARAVAKEL--GGPVWVVKSQIHAGGRGAGRFKDDPNGKGGVRVVKSIDDVVASTDAMLGKVLVTKQTGPEGKEVKRIYVEEGADIKRELYLSMLLDRATSRITIVASTEGGMEIEEVAHTSPEKIVKVAIDPVQGLQGYHARKVAFALGLEGKQVGACTKFLLGMYKAFTDLDMSLVEVNPLVVTGSGEVLA 220          
BLAST of FC878605 vs. ExPASy Swiss-Prot
Match: SUCC_MARMM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Maricaulis maris (strain MCS10) GN=sucC PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.770e-35
Identity = 88/213 (41.31%), Postives = 125/213 (58.69%), Query Frame = 2
Query:  116 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPL 742
            +NIHE+Q   ++  +G  V +G+A+ S DE   A  D  P     VVKSQI AGGRG G FK   S  KGGV +   KE+V   A +MLG  LVT QTGP+GK V+++Y+ +   +  E+Y +++++R+T     +  ++GG  IE++A + P  I  + ID   G+TD  AA V D L  +   R D +   K LY  FCE D ++LEINPL
Sbjct:    1 MNIHEHQAKAVLKSFGAPVAEGVAIFSADEAAAAA-DQLPGPL-WVVKSQIHAGGRGKGKFKELGSDAKGGVRLAFSKEDVVKNAKEMLGNTLVTHQTGPEGKRVNRLYIEDGADIATELYCSLLVNRETGQVAFVVSTEGGMDIEEVAAETPEKIQTIDIDPSTGVTDASAAAVCDALKLEGQAREDMMGLAKILYTAFCEKDMSMLEINPL 211          
BLAST of FC878605 vs. ExPASy Swiss-Prot
Match: SUCC_HERAR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Herminiimonas arsenicoxydans GN=sucC PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.843e-35
Identity = 91/224 (40.62%), Postives = 127/224 (56.70%), Query Frame = 2
Query:  116 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLEINPLAETSGKQLVA 772
            +NIHEYQG E++ KYG+  PKG    SVDE  +A +      K  VVK+QI AGGRG G       GGV + K  +EV   A  +LG  LVT QTGP+G++V ++ + E   +  E+Y  +++DR +    ++  S+GG  IE +AE  P  I KV ID F G+ D +A    D +A K+     +I Q +     LYK F E+D +L EINPL  T   ++VA
Sbjct:    1 MNIHEYQGKEILRKYGVTTPKGFPCFSVDEAVQAAEKL--GGKVWVVKAQIHAGGRGKG-------GGVKVAKSLDEVRKYANDILGMTLVTHQTGPEGRLVKRLLIEEGADIKKELYVGMVVDRGSQRVALMASSEGGMDIEHVAEHTPEKIHKVFIDPFKGLLDSEA----DDIARKIGVPEGSIPQARAFMQGLYKAFDETDASLAEINPLIVTGDDRIVA 211          
BLAST of FC878605 vs. ExPASy Swiss-Prot
Match: SUCC_AZOSB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Azoarcus sp. (strain BH72) GN=sucC PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.843e-35
Identity = 86/210 (40.95%), Postives = 122/210 (58.10%), Query Frame = 2
Query:  116 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPL 742
            + IHEYQ  E++ KYG+  P+G+   SVDE  KA ++     K  VVK+QI AGGRG G       GGV + K  +EV  LAG++LG  LVT QTGP+G+ V ++ + E   +  E Y A + DR T    ++  S+GG  IE++A   P  I+KV +D   G+TD  A ++  G+    A    A++  KKLY  + E+D +L EINPL
Sbjct:    1 MKIHEYQAKEVLRKYGVVTPRGIPCFSVDEAVKAAEEL--GGKIWVVKAQIHAGGRGKG-------GGVKLGKSLDEVRTLAGQILGMQLVTHQTGPEGQKVRRLLIEEGADIKKEYYVAALTDRATQKVAMMASSEGGMDIEEVAHNTPEKIIKVFVDPLAGLTDAQAIELAKGIGVPEASIPQAVDTFKKLYTCYMETDASLAEINPL 201          
BLAST of FC878605 vs. ExPASy Swiss-Prot
Match: SUCC_NAUPA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=sucC PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.285e-34
Identity = 83/220 (37.73%), Postives = 127/220 (57.73%), Query Frame = 2
Query:  116 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKAIQDAFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVA 772
            +NIHEYQ  E+  KYG+  P+G    +  E ++  ++        VVK+QI AGGRG         GGV + K  +EVE +A +MLG  LVT QTGP+GK+V KVY+ E   + +E+Y  ++LDR    P+++  ++GG  IE++AEK P  I+KV ID   G     A K+  GL     ++ + I+    LY ++ ++D  ++EINPL +T   + +A
Sbjct:    1 MNIHEYQAKEIFRKYGVPTPRGGVAFTGPEARRVAEEL--GGNLWVVKAQIHAGGRGKA-------GGVKLAKSLDEVEKIAEEMLGMTLVTHQTGPEGKVVKKVYIEEGADIKDELYLGMVLDRALEMPVMMASTEGGMEIEEVAEKTPEKIIKVAIDPAIGFQPFHARKLAFGLGLPKDEQREFIKFASALYNVYMDNDAEMIEINPLIKTGDGKFLA 211          
The following BLAST results are available for this feature:
BLAST of FC878605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_PARDP3.383e-3540.85Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACP23.383e-3539.09Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCB_TRIVA3.383e-3537.84Succinyl-CoA ligase [GDP-forming] subunit beta, hy... [more]
SUCC_CHLCH4.418e-3536.94Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ALKMQ4.418e-3538.64Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHOCS5.770e-3538.74Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MARMM5.770e-3541.31Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HERAR9.843e-3540.63Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_AZOSB9.843e-3540.95Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NAUPA1.285e-3437.73Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YF14RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YF14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878605 ID=FC878605; Name=FC878605; organism=Citrus clementina; type=EST; length=773bp
CATCTATCTAATTCGAATCTTCTCTTCTGAAATAATGGTGAGAGGATTGT
TAAACAAACTCGTCTCTCGTTCCCTCACCGTCGCCGGCCAATGGCAGCAA
CAGCAGCTCCGCCGTCTCAACATCCACGAATATCAGGGGGCTGAGTTGAT
GGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCTGTTGCTTCTGTTG
ATGAAGTCAAAAAGGCTATTCAGGATGCTTTTCCCGATCATAAGGAGCTG
GTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCTTGGGTACTTTTAA
GTCTGGTCTTAAGGGTGGGGTTCACATCGTTAAGAAAGAAGAAGTTGAAG
ATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCACCAAACAAACTGGT
CCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTGAAAAGTTGTCACT
TGTCAATGAGATGTACTTTGCTATCATGTTGGATCGTAAAACTGCTGGCC
CTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCATTGAAGACCTTGCT
GAGAAATATCCTAACATGATTGTTAAGGTGCCTATTGATGTTTTCAATGG
AATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGTTTGGCACCCAAGG
TTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAAACTGTATAAACTC
TTTTGTGAGAGTGACTGCACATTATTGGAAATCAATCCTCTAGCAGAGAC
TTCTGGTAAGCAGTTGGTGGCTG
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